Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04206

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04204 and MIT1002_04205 are separated by 52 nucleotidesMIT1002_04205 and MIT1002_04206 are separated by 29 nucleotidesMIT1002_04206 and MIT1002_04207 are separated by 207 nucleotides MIT1002_04204: MIT1002_04204 - putative chromate transport protein, at 69,207 to 70,664 _04204 MIT1002_04205: MIT1002_04205 - hypothetical protein, at 70,717 to 71,625 _04205 MIT1002_04206: MIT1002_04206 - site-specific tyrosine recombinase XerC, at 71,655 to 72,662 _04206 MIT1002_04207: MIT1002_04207 - chromosome segregation protein SMC, at 72,870 to 73,919 _04207 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 70.657 kb on - strandat 70.665 kb on + strandat 70.744 kb on + strandat 70.835 kb on - strand, within MIT1002_04205at 70.856 kb on - strand, within MIT1002_04205at 70.856 kb on - strand, within MIT1002_04205at 70.876 kb on + strand, within MIT1002_04205at 70.938 kb on + strand, within MIT1002_04205at 71.004 kb on + strand, within MIT1002_04205at 71.058 kb on + strand, within MIT1002_04205at 71.066 kb on - strand, within MIT1002_04205at 71.071 kb on + strand, within MIT1002_04205at 71.071 kb on + strand, within MIT1002_04205at 71.108 kb on + strand, within MIT1002_04205at 71.168 kb on - strand, within MIT1002_04205at 71.210 kb on - strand, within MIT1002_04205at 71.264 kb on - strand, within MIT1002_04205at 71.271 kb on - strand, within MIT1002_04205at 71.281 kb on + strand, within MIT1002_04205at 71.335 kb on - strand, within MIT1002_04205at 71.344 kb on + strand, within MIT1002_04205at 71.362 kb on - strand, within MIT1002_04205at 71.372 kb on + strand, within MIT1002_04205at 71.380 kb on - strand, within MIT1002_04205at 71.499 kb on - strand, within MIT1002_04205at 71.499 kb on - strand, within MIT1002_04205at 71.517 kb on + strand, within MIT1002_04205at 71.518 kb on + strand, within MIT1002_04205at 71.568 kb on + strandat 71.568 kb on + strandat 71.568 kb on + strandat 71.568 kb on + strandat 71.581 kb on - strandat 71.583 kb on - strandat 71.589 kb on - strandat 71.603 kb on - strandat 71.613 kb on - strandat 71.629 kb on - strandat 71.652 kb on + strandat 71.664 kb on + strandat 71.709 kb on + strandat 71.718 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.786 kb on + strand, within MIT1002_04206at 71.801 kb on - strand, within MIT1002_04206at 71.853 kb on - strand, within MIT1002_04206at 71.901 kb on + strand, within MIT1002_04206at 71.934 kb on - strand, within MIT1002_04206at 71.940 kb on - strand, within MIT1002_04206at 72.033 kb on - strand, within MIT1002_04206at 72.057 kb on + strand, within MIT1002_04206at 72.065 kb on - strand, within MIT1002_04206at 72.187 kb on + strand, within MIT1002_04206at 72.187 kb on + strand, within MIT1002_04206at 72.266 kb on + strand, within MIT1002_04206at 72.273 kb on + strand, within MIT1002_04206at 72.274 kb on + strand, within MIT1002_04206at 72.274 kb on - strand, within MIT1002_04206at 72.280 kb on + strand, within MIT1002_04206at 72.288 kb on - strand, within MIT1002_04206at 72.310 kb on - strand, within MIT1002_04206at 72.310 kb on - strand, within MIT1002_04206at 72.476 kb on - strand, within MIT1002_04206at 72.542 kb on + strand, within MIT1002_04206at 72.550 kb on - strand, within MIT1002_04206at 72.575 kb on - strandat 72.602 kb on + strandat 72.739 kb on - strandat 72.739 kb on - strandat 72.883 kb on + strandat 72.927 kb on + strandat 72.934 kb on - strandat 72.941 kb on - strandat 72.941 kb on - strandat 73.004 kb on + strand, within MIT1002_04207at 73.004 kb on + strand, within MIT1002_04207at 73.004 kb on + strand, within MIT1002_04207at 73.004 kb on + strand, within MIT1002_04207at 73.063 kb on + strand, within MIT1002_04207at 73.075 kb on - strand, within MIT1002_04207at 73.075 kb on - strand, within MIT1002_04207at 73.128 kb on - strand, within MIT1002_04207at 73.181 kb on - strand, within MIT1002_04207at 73.196 kb on - strand, within MIT1002_04207at 73.208 kb on - strand, within MIT1002_04207at 73.279 kb on - strand, within MIT1002_04207at 73.304 kb on + strand, within MIT1002_04207at 73.304 kb on + strand, within MIT1002_04207at 73.304 kb on + strand, within MIT1002_04207at 73.304 kb on + strand, within MIT1002_04207at 73.312 kb on - strand, within MIT1002_04207at 73.312 kb on - strand, within MIT1002_04207at 73.312 kb on - strand, within MIT1002_04207at 73.312 kb on - strand, within MIT1002_04207at 73.324 kb on - strand, within MIT1002_04207at 73.431 kb on + strand, within MIT1002_04207at 73.431 kb on + strand, within MIT1002_04207at 73.431 kb on + strand, within MIT1002_04207at 73.431 kb on + strand, within MIT1002_04207at 73.432 kb on - strand, within MIT1002_04207at 73.439 kb on - strand, within MIT1002_04207at 73.452 kb on + strand, within MIT1002_04207at 73.468 kb on - strand, within MIT1002_04207at 73.496 kb on - strand, within MIT1002_04207at 73.503 kb on + strand, within MIT1002_04207at 73.513 kb on + strand, within MIT1002_04207at 73.536 kb on - strand, within MIT1002_04207at 73.595 kb on + strand, within MIT1002_04207at 73.595 kb on + strand, within MIT1002_04207at 73.595 kb on + strand, within MIT1002_04207at 73.608 kb on - strand, within MIT1002_04207

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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70,657 - +0.6
70,665 + -0.9
70,744 + +1.5
70,835 - MIT1002_04205 0.13 -0.9
70,856 - MIT1002_04205 0.15 -1.9
70,856 - MIT1002_04205 0.15 +1.2
70,876 + MIT1002_04205 0.17 -0.1
70,938 + MIT1002_04205 0.24 +1.6
71,004 + MIT1002_04205 0.32 -0.3
71,058 + MIT1002_04205 0.38 +0.3
71,066 - MIT1002_04205 0.38 +0.7
71,071 + MIT1002_04205 0.39 -0.2
71,071 + MIT1002_04205 0.39 -1.0
71,108 + MIT1002_04205 0.43 -1.3
71,168 - MIT1002_04205 0.50 -1.7
71,210 - MIT1002_04205 0.54 +0.4
71,264 - MIT1002_04205 0.60 +0.2
71,271 - MIT1002_04205 0.61 -0.2
71,281 + MIT1002_04205 0.62 +0.4
71,335 - MIT1002_04205 0.68 +0.4
71,344 + MIT1002_04205 0.69 +0.4
71,362 - MIT1002_04205 0.71 +0.4
71,372 + MIT1002_04205 0.72 +2.5
71,380 - MIT1002_04205 0.73 -1.8
71,499 - MIT1002_04205 0.86 +1.2
71,499 - MIT1002_04205 0.86 +1.2
71,517 + MIT1002_04205 0.88 +0.5
71,518 + MIT1002_04205 0.88 +0.4
71,568 + +0.2
71,568 + -0.5
71,568 + +0.5
71,568 + -0.2
71,581 - -0.8
71,583 - -1.0
71,589 - +0.5
71,603 - -0.9
71,613 - -1.7
71,629 - +0.2
71,652 + +0.1
71,664 + -1.6
71,709 + +1.2
71,718 + -1.4
71,739 + +0.3
71,739 + -0.2
71,786 + MIT1002_04206 0.13 +2.1
71,801 - MIT1002_04206 0.14 -1.9
71,853 - MIT1002_04206 0.20 -0.9
71,901 + MIT1002_04206 0.24 -2.5
71,934 - MIT1002_04206 0.28 -0.2
71,940 - MIT1002_04206 0.28 -1.0
72,033 - MIT1002_04206 0.38 -2.6
72,057 + MIT1002_04206 0.40 +1.8
72,065 - MIT1002_04206 0.41 +0.3
72,187 + MIT1002_04206 0.53 +0.0
72,187 + MIT1002_04206 0.53 +0.2
72,266 + MIT1002_04206 0.61 +0.8
72,273 + MIT1002_04206 0.61 -1.2
72,274 + MIT1002_04206 0.61 -0.5
72,274 - MIT1002_04206 0.61 -0.7
72,280 + MIT1002_04206 0.62 -0.5
72,288 - MIT1002_04206 0.63 -0.4
72,310 - MIT1002_04206 0.65 -0.2
72,310 - MIT1002_04206 0.65 +0.1
72,476 - MIT1002_04206 0.81 -0.1
72,542 + MIT1002_04206 0.88 +1.0
72,550 - MIT1002_04206 0.89 -1.3
72,575 - -1.0
72,602 + -0.3
72,739 - +0.8
72,739 - -0.8
72,883 + +1.0
72,927 + +1.5
72,934 - -1.4
72,941 - +0.1
72,941 - -1.8
73,004 + MIT1002_04207 0.13 +0.1
73,004 + MIT1002_04207 0.13 -0.2
73,004 + MIT1002_04207 0.13 +0.7
73,004 + MIT1002_04207 0.13 +1.3
73,063 + MIT1002_04207 0.18 +2.3
73,075 - MIT1002_04207 0.20 +1.6
73,075 - MIT1002_04207 0.20 -1.2
73,128 - MIT1002_04207 0.25 +2.0
73,181 - MIT1002_04207 0.30 -0.2
73,196 - MIT1002_04207 0.31 +0.1
73,208 - MIT1002_04207 0.32 +0.0
73,279 - MIT1002_04207 0.39 +0.3
73,304 + MIT1002_04207 0.41 +0.6
73,304 + MIT1002_04207 0.41 +0.5
73,304 + MIT1002_04207 0.41 +0.8
73,304 + MIT1002_04207 0.41 -0.0
73,312 - MIT1002_04207 0.42 +0.7
73,312 - MIT1002_04207 0.42 -0.5
73,312 - MIT1002_04207 0.42 -1.1
73,312 - MIT1002_04207 0.42 +0.9
73,324 - MIT1002_04207 0.43 -0.6
73,431 + MIT1002_04207 0.53 -0.0
73,431 + MIT1002_04207 0.53 -0.6
73,431 + MIT1002_04207 0.53 +0.3
73,431 + MIT1002_04207 0.53 -0.4
73,432 - MIT1002_04207 0.54 +0.1
73,439 - MIT1002_04207 0.54 -2.0
73,452 + MIT1002_04207 0.55 +0.7
73,468 - MIT1002_04207 0.57 +1.2
73,496 - MIT1002_04207 0.60 -1.3
73,503 + MIT1002_04207 0.60 -0.4
73,513 + MIT1002_04207 0.61 +0.8
73,536 - MIT1002_04207 0.63 +0.4
73,595 + MIT1002_04207 0.69 -1.1
73,595 + MIT1002_04207 0.69 -2.2
73,595 + MIT1002_04207 0.69 +1.5
73,608 - MIT1002_04207 0.70 -1.3

Or see this region's nucleotide sequence