Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04079

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
4,575,030	+		MIT1002_04077	0.63	-0.9
4,575,039	-		MIT1002_04077	0.64	+0.8
4,575,057	+		MIT1002_04077	0.65	-2.0
4,575,145	-		MIT1002_04077	0.70	+1.3
4,575,175	+		MIT1002_04077	0.72	+0.0
4,575,182	+		MIT1002_04077	0.72	+0.6
4,575,225	+		MIT1002_04077	0.75	-1.2
4,575,291	+		MIT1002_04077	0.78	-0.1
4,575,564	-				-0.2
4,575,630	+				+0.4
4,575,631	+				-1.0
4,575,638	-				-0.3
4,575,639	-				-0.2
4,575,639	-				+1.4
4,575,639	-				-2.3
4,575,677	-				+1.3
4,575,687	+				+0.6
4,575,695	-				-0.2
4,575,709	+				-1.4
4,575,709	+				+0.9
4,575,709	+				-0.4
4,575,709	+				-0.6
4,575,709	+				-1.1
4,575,709	+				-2.7
4,575,717	-				-0.2
4,575,717	-				+1.6
4,575,717	-				+0.3
4,575,717	-				-0.7
4,575,722	+				+2.3
4,575,807	+				+0.2
4,575,865	+				-0.6
4,575,873	-				+0.8
4,575,969	+		MIT1002_04078	0.62	-0.5
4,576,017	-				+0.9
4,576,024	+		MIT1002_04079	0.12	-0.3
4,576,077	+		MIT1002_04079	0.56	-2.2
4,576,082	+		MIT1002_04079	0.60	+0.3
4,576,114	+		MIT1002_04079	0.87	+1.0
4,576,114	+		MIT1002_04079	0.87	-2.1
4,576,114	+		MIT1002_04079	0.87	-0.3
4,576,123	-				-1.4
4,576,233	+		MIT1002_04080	0.23	-0.5
4,576,257	-		MIT1002_04080	0.29	+1.1
4,576,413	+		MIT1002_04080	0.70	-0.6
4,576,435	-		MIT1002_04080	0.76	+1.3
4,576,441	-		MIT1002_04080	0.78	-0.5
4,576,491	+				-0.9
4,576,545	-				-0.1
4,576,574	+				+0.5
4,576,618	+		MIT1002_04081	0.21	-0.0
4,576,619	-		MIT1002_04081	0.22	-0.1
4,576,620	+		MIT1002_04081	0.22	-1.0
4,576,620	-		MIT1002_04081	0.22	-2.8
4,576,629	+		MIT1002_04081	0.26	-1.0
4,576,637	-		MIT1002_04081	0.30	-2.5
4,576,662	-		MIT1002_04081	0.42	-1.0
4,576,675	+		MIT1002_04081	0.48	-1.3
4,576,725	-		MIT1002_04081	0.71	+0.1
4,576,725	-		MIT1002_04081	0.71	+0.7
4,576,951	+		MIT1002_04082	0.18	+0.3
4,576,957	+		MIT1002_04082	0.20	-0.6
4,576,984	+		MIT1002_04082	0.30	-1.1
4,577,008	-		MIT1002_04082	0.39	-0.4
4,577,068	+		MIT1002_04082	0.61	+1.0
4,577,068	-		MIT1002_04082	0.61	+1.5
4,577,070	+		MIT1002_04082	0.62	+2.4
4,577,075	+		MIT1002_04082	0.64	+0.8
4,577,087	+		MIT1002_04082	0.69	+0.0
4,577,088	+		MIT1002_04082	0.69	+1.7