Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03790

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03789 and MIT1002_03790 are separated by 1 nucleotidesMIT1002_03790 and MIT1002_03791 are separated by 94 nucleotides MIT1002_03789: MIT1002_03789 - tRNA dimethylallyltransferase, at 4,235,219 to 4,236,154 _03789 MIT1002_03790: MIT1002_03790 - DNA mismatch repair protein MutL, at 4,236,156 to 4,238,015 _03790 MIT1002_03791: MIT1002_03791 - N-acetylmuramoyl-L-alanine amidase AmiB precursor, at 4,238,110 to 4,239,459 _03791 Position (kb) 4236 4237 4238 4239Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4235.200 kb on - strandat 4235.280 kb on - strandat 4235.285 kb on - strandat 4236.152 kb on - strandat 4236.171 kb on - strandat 4236.189 kb on - strandat 4236.253 kb on - strandat 4236.253 kb on - strandat 4236.384 kb on - strand, within MIT1002_03790at 4236.463 kb on + strand, within MIT1002_03790at 4236.472 kb on + strand, within MIT1002_03790at 4236.473 kb on + strand, within MIT1002_03790at 4236.473 kb on + strand, within MIT1002_03790at 4236.473 kb on - strand, within MIT1002_03790at 4236.501 kb on - strand, within MIT1002_03790at 4236.514 kb on - strand, within MIT1002_03790at 4236.633 kb on - strand, within MIT1002_03790at 4236.653 kb on + strand, within MIT1002_03790at 4236.672 kb on - strand, within MIT1002_03790at 4236.684 kb on - strand, within MIT1002_03790at 4236.754 kb on - strand, within MIT1002_03790at 4236.759 kb on + strand, within MIT1002_03790at 4236.806 kb on - strand, within MIT1002_03790at 4236.806 kb on - strand, within MIT1002_03790at 4236.822 kb on + strand, within MIT1002_03790at 4236.831 kb on - strand, within MIT1002_03790at 4236.840 kb on + strand, within MIT1002_03790at 4236.861 kb on - strand, within MIT1002_03790at 4236.880 kb on + strand, within MIT1002_03790at 4236.894 kb on - strand, within MIT1002_03790at 4236.924 kb on - strand, within MIT1002_03790at 4236.939 kb on - strand, within MIT1002_03790at 4236.939 kb on - strand, within MIT1002_03790at 4236.939 kb on - strand, within MIT1002_03790at 4236.939 kb on - strand, within MIT1002_03790at 4236.987 kb on + strand, within MIT1002_03790at 4236.987 kb on - strand, within MIT1002_03790at 4237.011 kb on - strand, within MIT1002_03790at 4237.034 kb on + strand, within MIT1002_03790at 4237.094 kb on + strand, within MIT1002_03790at 4237.138 kb on - strand, within MIT1002_03790at 4237.178 kb on - strand, within MIT1002_03790at 4237.178 kb on - strand, within MIT1002_03790at 4237.180 kb on + strand, within MIT1002_03790at 4237.188 kb on - strand, within MIT1002_03790at 4237.237 kb on + strand, within MIT1002_03790at 4237.237 kb on + strand, within MIT1002_03790at 4237.276 kb on - strand, within MIT1002_03790at 4237.321 kb on + strand, within MIT1002_03790at 4237.321 kb on + strand, within MIT1002_03790at 4237.321 kb on + strand, within MIT1002_03790at 4237.329 kb on - strand, within MIT1002_03790at 4237.329 kb on - strand, within MIT1002_03790at 4237.329 kb on - strand, within MIT1002_03790at 4237.331 kb on - strand, within MIT1002_03790at 4237.341 kb on - strand, within MIT1002_03790at 4237.341 kb on - strand, within MIT1002_03790at 4237.358 kb on - strand, within MIT1002_03790at 4237.463 kb on + strand, within MIT1002_03790at 4237.471 kb on - strand, within MIT1002_03790at 4237.473 kb on + strand, within MIT1002_03790at 4237.473 kb on + strand, within MIT1002_03790at 4237.473 kb on + strand, within MIT1002_03790at 4237.473 kb on + strand, within MIT1002_03790at 4237.473 kb on + strand, within MIT1002_03790at 4237.473 kb on + strand, within MIT1002_03790at 4237.478 kb on + strand, within MIT1002_03790at 4237.481 kb on - strand, within MIT1002_03790at 4237.481 kb on - strand, within MIT1002_03790at 4237.481 kb on - strand, within MIT1002_03790at 4237.481 kb on - strand, within MIT1002_03790at 4237.481 kb on - strand, within MIT1002_03790at 4237.481 kb on - strand, within MIT1002_03790at 4237.481 kb on - strand, within MIT1002_03790at 4237.481 kb on - strand, within MIT1002_03790at 4237.481 kb on - strand, within MIT1002_03790at 4237.488 kb on + strand, within MIT1002_03790at 4237.663 kb on + strand, within MIT1002_03790at 4237.663 kb on + strand, within MIT1002_03790at 4237.671 kb on - strand, within MIT1002_03790at 4237.671 kb on - strand, within MIT1002_03790at 4237.671 kb on - strand, within MIT1002_03790at 4237.688 kb on + strand, within MIT1002_03790at 4237.706 kb on + strand, within MIT1002_03790at 4237.837 kb on - strandat 4237.950 kb on + strandat 4237.959 kb on + strandat 4237.967 kb on - strandat 4237.996 kb on + strandat 4238.017 kb on + strandat 4238.017 kb on + strandat 4238.024 kb on + strandat 4238.068 kb on - strandat 4238.130 kb on + strandat 4238.182 kb on - strandat 4238.198 kb on + strandat 4238.198 kb on + strandat 4238.206 kb on - strandat 4238.213 kb on + strandat 4238.268 kb on + strand, within MIT1002_03791at 4238.280 kb on + strand, within MIT1002_03791at 4238.329 kb on - strand, within MIT1002_03791at 4238.363 kb on - strand, within MIT1002_03791at 4238.365 kb on + strand, within MIT1002_03791at 4238.494 kb on - strand, within MIT1002_03791at 4238.551 kb on - strand, within MIT1002_03791at 4238.580 kb on + strand, within MIT1002_03791at 4238.616 kb on - strand, within MIT1002_03791at 4238.616 kb on - strand, within MIT1002_03791at 4238.673 kb on - strand, within MIT1002_03791at 4238.673 kb on - strand, within MIT1002_03791at 4238.706 kb on + strand, within MIT1002_03791at 4238.898 kb on - strand, within MIT1002_03791

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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4,235,200 - -2.7
4,235,280 - -0.3
4,235,285 - +0.3
4,236,152 - +0.3
4,236,171 - -0.2
4,236,189 - +0.1
4,236,253 - -1.6
4,236,253 - +1.4
4,236,384 - MIT1002_03790 0.12 +0.9
4,236,463 + MIT1002_03790 0.17 +0.4
4,236,472 + MIT1002_03790 0.17 -0.9
4,236,473 + MIT1002_03790 0.17 -1.5
4,236,473 + MIT1002_03790 0.17 +0.8
4,236,473 - MIT1002_03790 0.17 +1.6
4,236,501 - MIT1002_03790 0.19 -0.4
4,236,514 - MIT1002_03790 0.19 -0.4
4,236,633 - MIT1002_03790 0.26 -0.8
4,236,653 + MIT1002_03790 0.27 +0.4
4,236,672 - MIT1002_03790 0.28 +0.6
4,236,684 - MIT1002_03790 0.28 +0.4
4,236,754 - MIT1002_03790 0.32 +2.6
4,236,759 + MIT1002_03790 0.32 -2.0
4,236,806 - MIT1002_03790 0.35 -1.3
4,236,806 - MIT1002_03790 0.35 -1.1
4,236,822 + MIT1002_03790 0.36 +4.5
4,236,831 - MIT1002_03790 0.36 +0.3
4,236,840 + MIT1002_03790 0.37 -1.7
4,236,861 - MIT1002_03790 0.38 -1.2
4,236,880 + MIT1002_03790 0.39 -0.2
4,236,894 - MIT1002_03790 0.40 +2.2
4,236,924 - MIT1002_03790 0.41 -0.6
4,236,939 - MIT1002_03790 0.42 -1.5
4,236,939 - MIT1002_03790 0.42 -0.4
4,236,939 - MIT1002_03790 0.42 -0.2
4,236,939 - MIT1002_03790 0.42 -0.0
4,236,987 + MIT1002_03790 0.45 +0.7
4,236,987 - MIT1002_03790 0.45 +1.1
4,237,011 - MIT1002_03790 0.46 +1.3
4,237,034 + MIT1002_03790 0.47 +1.1
4,237,094 + MIT1002_03790 0.50 +0.7
4,237,138 - MIT1002_03790 0.53 -0.7
4,237,178 - MIT1002_03790 0.55 +0.4
4,237,178 - MIT1002_03790 0.55 +0.5
4,237,180 + MIT1002_03790 0.55 -1.6
4,237,188 - MIT1002_03790 0.55 -1.2
4,237,237 + MIT1002_03790 0.58 +0.0
4,237,237 + MIT1002_03790 0.58 -1.3
4,237,276 - MIT1002_03790 0.60 +1.2
4,237,321 + MIT1002_03790 0.63 +1.0
4,237,321 + MIT1002_03790 0.63 +0.3
4,237,321 + MIT1002_03790 0.63 -0.9
4,237,329 - MIT1002_03790 0.63 +0.2
4,237,329 - MIT1002_03790 0.63 -2.2
4,237,329 - MIT1002_03790 0.63 -1.3
4,237,331 - MIT1002_03790 0.63 +1.1
4,237,341 - MIT1002_03790 0.64 +1.4
4,237,341 - MIT1002_03790 0.64 -1.0
4,237,358 - MIT1002_03790 0.65 +1.3
4,237,463 + MIT1002_03790 0.70 -1.8
4,237,471 - MIT1002_03790 0.71 +0.3
4,237,473 + MIT1002_03790 0.71 -1.4
4,237,473 + MIT1002_03790 0.71 -0.1
4,237,473 + MIT1002_03790 0.71 +0.0
4,237,473 + MIT1002_03790 0.71 +0.1
4,237,473 + MIT1002_03790 0.71 -1.3
4,237,473 + MIT1002_03790 0.71 +1.5
4,237,478 + MIT1002_03790 0.71 -0.8
4,237,481 - MIT1002_03790 0.71 -0.6
4,237,481 - MIT1002_03790 0.71 +1.3
4,237,481 - MIT1002_03790 0.71 -0.9
4,237,481 - MIT1002_03790 0.71 -1.5
4,237,481 - MIT1002_03790 0.71 +1.0
4,237,481 - MIT1002_03790 0.71 +0.7
4,237,481 - MIT1002_03790 0.71 -0.1
4,237,481 - MIT1002_03790 0.71 +1.0
4,237,481 - MIT1002_03790 0.71 +0.8
4,237,488 + MIT1002_03790 0.72 -0.2
4,237,663 + MIT1002_03790 0.81 +0.6
4,237,663 + MIT1002_03790 0.81 +3.1
4,237,671 - MIT1002_03790 0.81 +0.0
4,237,671 - MIT1002_03790 0.81 -0.9
4,237,671 - MIT1002_03790 0.81 -1.1
4,237,688 + MIT1002_03790 0.82 -1.7
4,237,706 + MIT1002_03790 0.83 +2.9
4,237,837 - +0.4
4,237,950 + +0.6
4,237,959 + +1.3
4,237,967 - +0.8
4,237,996 + -0.4
4,238,017 + -0.3
4,238,017 + +1.0
4,238,024 + -0.8
4,238,068 - +0.1
4,238,130 + +0.2
4,238,182 - -0.9
4,238,198 + -0.4
4,238,198 + -0.3
4,238,206 - -2.1
4,238,213 + -0.3
4,238,268 + MIT1002_03791 0.12 -1.2
4,238,280 + MIT1002_03791 0.13 +0.4
4,238,329 - MIT1002_03791 0.16 -1.0
4,238,363 - MIT1002_03791 0.19 +0.6
4,238,365 + MIT1002_03791 0.19 -1.1
4,238,494 - MIT1002_03791 0.28 -0.7
4,238,551 - MIT1002_03791 0.33 +0.9
4,238,580 + MIT1002_03791 0.35 -0.7
4,238,616 - MIT1002_03791 0.37 -0.2
4,238,616 - MIT1002_03791 0.37 -0.9
4,238,673 - MIT1002_03791 0.42 -0.1
4,238,673 - MIT1002_03791 0.42 -1.1
4,238,706 + MIT1002_03791 0.44 -1.4
4,238,898 - MIT1002_03791 0.58 -0.7

Or see this region's nucleotide sequence