Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03785

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
4,230,539	-		MIT1002_03784	0.60	-1.1
4,230,564	-		MIT1002_03784	0.61	-0.6
4,230,564	-		MIT1002_03784	0.61	-0.1
4,230,577	+		MIT1002_03784	0.62	-1.2
4,230,577	+		MIT1002_03784	0.62	-0.6
4,230,585	-		MIT1002_03784	0.63	-1.7
4,230,585	-		MIT1002_03784	0.63	+0.4
4,230,655	-		MIT1002_03784	0.67	-1.7
4,230,655	-		MIT1002_03784	0.67	-1.0
4,230,710	-		MIT1002_03784	0.70	-1.5
4,230,764	+		MIT1002_03784	0.74	-0.9
4,230,764	+		MIT1002_03784	0.74	+0.8
4,230,799	+		MIT1002_03784	0.76	-1.5
4,230,807	-		MIT1002_03784	0.76	+1.6
4,230,856	+		MIT1002_03784	0.79	-0.7
4,230,888	+		MIT1002_03784	0.81	-1.0
4,230,888	+		MIT1002_03784	0.81	-3.4
4,230,888	+		MIT1002_03784	0.81	-0.4
4,230,968	+		MIT1002_03784	0.86	-1.5
4,230,968	+		MIT1002_03784	0.86	-0.8
4,230,968	+		MIT1002_03784	0.86	+1.6
4,230,968	+		MIT1002_03784	0.86	-2.4
4,230,968	+		MIT1002_03784	0.86	+0.2
4,230,968	+		MIT1002_03784	0.86	-0.8
4,230,976	-		MIT1002_03784	0.87	-1.7
4,230,976	-		MIT1002_03784	0.87	-0.7
4,230,976	-		MIT1002_03784	0.87	+1.0
4,231,034	-				+0.8
4,231,064	+				-1.0
4,231,072	-				-1.0
4,231,095	+				+1.6
4,231,156	-				-2.7
4,231,180	+				-0.6
4,231,218	+				-0.1
4,231,291	+				-2.9
4,231,367	+				-1.2
4,231,486	+				+1.3
4,231,529	-				-6.0
4,231,561	-				-3.2
4,231,574	+		MIT1002_03785	0.11	-2.8
4,231,574	+		MIT1002_03785	0.11	-0.0
4,231,574	+		MIT1002_03785	0.11	-2.9
4,231,574	+		MIT1002_03785	0.11	-2.9
4,231,574	+		MIT1002_03785	0.11	-1.3
4,231,582	-		MIT1002_03785	0.12	-2.8
4,231,582	-		MIT1002_03785	0.12	-3.1
4,231,582	-		MIT1002_03785	0.12	-6.0
4,231,582	-		MIT1002_03785	0.12	-2.2
4,231,582	-		MIT1002_03785	0.12	-4.7
4,231,705	-		MIT1002_03785	0.26	-1.4
4,231,705	-		MIT1002_03785	0.26	-0.6
4,231,746	+		MIT1002_03785	0.30	-3.1
4,231,754	-		MIT1002_03785	0.31	-6.5
4,231,764	+		MIT1002_03785	0.32	-2.5
4,231,772	-		MIT1002_03785	0.33	-1.9
4,231,890	+		MIT1002_03785	0.47	-2.6
4,231,914	+		MIT1002_03785	0.49	+0.8
4,231,922	-		MIT1002_03785	0.50	-5.5
4,232,012	-		MIT1002_03785	0.60	-2.4
4,232,036	-		MIT1002_03785	0.63	-3.2
4,232,159	+		MIT1002_03785	0.77	-2.0
4,232,167	-		MIT1002_03785	0.78	-2.1
4,232,198	+		MIT1002_03785	0.82	-3.6
4,232,207	-		MIT1002_03785	0.83	-2.3
4,232,252	-		MIT1002_03785	0.88	-2.4
4,232,252	-		MIT1002_03785	0.88	-3.3
4,232,252	-		MIT1002_03785	0.88	-2.3
4,232,253	-		MIT1002_03785	0.88	-3.0
4,232,286	-				-1.5
4,232,398	+				-3.4
4,232,398	+				-3.4
4,232,398	+				-3.5
4,232,406	-				-2.2
4,232,406	-				+1.6
4,232,498	-		MIT1002_03786	0.11	-1.5
4,232,627	+		MIT1002_03786	0.23	-6.1
4,232,627	+		MIT1002_03786	0.23	-2.1
4,232,670	-		MIT1002_03786	0.26	-1.1
4,232,670	-		MIT1002_03786	0.26	-3.3
4,232,703	-		MIT1002_03786	0.29	-5.9
4,232,707	+		MIT1002_03786	0.30	-2.2
4,232,707	+		MIT1002_03786	0.30	+0.0
4,232,715	-		MIT1002_03786	0.30	+0.1
4,232,715	-		MIT1002_03786	0.30	-0.6
4,232,715	-		MIT1002_03786	0.30	-1.6
4,232,715	-		MIT1002_03786	0.30	-3.0
4,232,780	+		MIT1002_03786	0.36	-0.3
4,232,788	-		MIT1002_03786	0.37	-0.3
4,232,788	-		MIT1002_03786	0.37	-6.9
4,233,034	+		MIT1002_03786	0.58	-1.5
4,233,042	-		MIT1002_03786	0.59	-3.8
4,233,142	+		MIT1002_03786	0.67	-2.0
4,233,157	-		MIT1002_03786	0.69	-2.8
4,233,194	-		MIT1002_03786	0.72	-3.8
4,233,239	-		MIT1002_03786	0.76	-3.2
4,233,265	+		MIT1002_03786	0.78	-4.5
4,233,278	-		MIT1002_03786	0.79	-1.1