Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03403

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
3,806,935	+		MIT1002_03402	0.54	+0.3
3,806,938	+		MIT1002_03402	0.54	+0.0
3,806,942	+		MIT1002_03402	0.54	-0.7
3,806,946	-		MIT1002_03402	0.55	-2.0
3,806,960	-		MIT1002_03402	0.55	+0.5
3,806,970	-		MIT1002_03402	0.56	-2.2
3,807,068	-		MIT1002_03402	0.62	+0.2
3,807,084	+		MIT1002_03402	0.63	-0.3
3,807,098	+		MIT1002_03402	0.63	-1.1
3,807,214	+		MIT1002_03402	0.70	+0.6
3,807,237	-		MIT1002_03402	0.71	+0.2
3,807,248	-		MIT1002_03402	0.72	+1.6
3,807,250	+		MIT1002_03402	0.72	-0.3
3,807,274	-		MIT1002_03402	0.74	+0.2
3,807,275	+		MIT1002_03402	0.74	+2.5
3,807,374	-		MIT1002_03402	0.79	-2.5
3,807,418	+		MIT1002_03402	0.82	+0.5
3,807,423	+		MIT1002_03402	0.82	+1.6
3,807,431	-		MIT1002_03402	0.83	-0.1
3,807,432	-		MIT1002_03402	0.83	-0.1
3,807,436	+		MIT1002_03402	0.83	-1.1
3,807,540	-		MIT1002_03402	0.89	-1.6
3,807,542	+		MIT1002_03402	0.89	+1.9
3,807,589	+				+1.9
3,807,602	-				+1.7
3,807,695	+				-1.0
3,807,721	-				+0.5
3,807,759	-				-0.3
3,808,788	-				-0.9
3,808,853	-		MIT1002_03404	0.11	-0.6
3,808,877	-		MIT1002_03404	0.13	-0.6
3,808,896	-		MIT1002_03404	0.14	-1.8
3,808,933	-		MIT1002_03404	0.17	-1.0
3,808,935	+		MIT1002_03404	0.17	-3.5
3,808,943	-		MIT1002_03404	0.17	+1.5
3,808,943	-		MIT1002_03404	0.17	-0.8
3,808,943	-		MIT1002_03404	0.17	-1.1
3,809,015	-		MIT1002_03404	0.22	+1.6
3,809,132	+		MIT1002_03404	0.29	-0.6
3,809,152	+		MIT1002_03404	0.31	+0.1
3,809,153	-		MIT1002_03404	0.31	-1.0
3,809,153	-		MIT1002_03404	0.31	+0.6
3,809,153	-		MIT1002_03404	0.31	-1.0
3,809,155	+		MIT1002_03404	0.31	+0.9
3,809,163	-		MIT1002_03404	0.32	-0.3
3,809,168	-		MIT1002_03404	0.32	+0.1
3,809,173	-		MIT1002_03404	0.32	-1.2
3,809,173	-		MIT1002_03404	0.32	-0.1
3,809,187	+		MIT1002_03404	0.33	-0.3
3,809,195	-		MIT1002_03404	0.34	-0.2
3,809,195	-		MIT1002_03404	0.34	+2.3
3,809,208	+		MIT1002_03404	0.34	-0.5
3,809,232	+		MIT1002_03404	0.36	-1.5
3,809,240	-		MIT1002_03404	0.37	-0.5
3,809,243	+		MIT1002_03404	0.37	-0.3
3,809,251	-		MIT1002_03404	0.37	-1.0
3,809,280	+		MIT1002_03404	0.39	+1.1
3,809,288	-		MIT1002_03404	0.40	+0.0
3,809,288	-		MIT1002_03404	0.40	-1.9
3,809,289	-		MIT1002_03404	0.40	-0.1
3,809,484	+		MIT1002_03404	0.52	+1.9
3,809,540	-		MIT1002_03404	0.56	-0.2
3,809,595	+		MIT1002_03404	0.60	-0.3
3,809,622	-		MIT1002_03404	0.61	+0.7