Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03345

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
3,738,220	+		MIT1002_03343	0.86	+0.3
3,738,242	-		MIT1002_03343	0.88	+2.7
3,738,262	-		MIT1002_03343	0.89	-1.9
3,738,367	+				+0.6
3,738,367	+				+0.2
3,738,375	-				-2.0
3,738,406	+				-2.0
3,738,466	+				+0.2
3,738,474	-				-0.1
3,738,474	-				+1.6
3,738,474	-				-0.8
3,738,474	-				-0.1
3,738,501	+				-0.8
3,738,509	-				-0.1
3,738,509	-				-0.4
3,738,515	+				-1.2
3,738,523	-		MIT1002_03344	0.11	-2.8
3,738,523	-		MIT1002_03344	0.11	+0.1
3,738,547	+		MIT1002_03344	0.16	-0.6
3,738,909	+				-0.7
3,738,951	-				+1.1
3,739,019	-				+3.1
3,739,019	-				+0.3
3,739,093	-				+1.5
3,739,217	+				+1.5
3,739,219	-				-0.3
3,739,274	+				-0.9
3,739,288	-				-1.7
3,739,288	-				-1.8
3,739,339	-				-0.3
3,739,352	-				-1.5
3,739,372	+				+1.0
3,739,380	+				+0.8
3,739,381	-				+0.1
3,739,381	-				+1.0
3,739,550	-		MIT1002_03345	0.17	-0.6
3,739,563	-		MIT1002_03345	0.17	-0.1
3,739,575	+		MIT1002_03345	0.18	-0.5
3,739,588	-		MIT1002_03345	0.18	-2.9
3,739,610	+		MIT1002_03345	0.19	-0.2
3,739,623	+		MIT1002_03345	0.20	-0.3
3,739,655	-		MIT1002_03345	0.21	-1.7
3,739,704	+		MIT1002_03345	0.23	-1.4
3,739,726	+		MIT1002_03345	0.24	-0.7
3,739,734	-		MIT1002_03345	0.25	+1.0
3,739,776	-		MIT1002_03345	0.27	+0.4
3,739,784	-		MIT1002_03345	0.27	+0.8
3,739,889	-		MIT1002_03345	0.31	+0.0
3,739,949	+		MIT1002_03345	0.34	+0.1
3,740,020	-		MIT1002_03345	0.37	-0.8
3,740,082	+		MIT1002_03345	0.40	-0.7
3,740,082	+		MIT1002_03345	0.40	+1.1
3,740,082	+		MIT1002_03345	0.40	-0.6
3,740,090	-		MIT1002_03345	0.40	-1.4
3,740,146	+		MIT1002_03345	0.43	-0.6
3,740,175	-		MIT1002_03345	0.44	-0.4
3,740,293	-		MIT1002_03345	0.49	-0.4
3,740,365	+		MIT1002_03345	0.52	-1.4
3,740,373	-		MIT1002_03345	0.52	+1.2
3,740,413	-		MIT1002_03345	0.54	-0.9
3,740,422	+		MIT1002_03345	0.55	-3.4
3,740,452	-		MIT1002_03345	0.56	+1.2
3,740,494	-		MIT1002_03345	0.58	+1.5
3,740,496	-		MIT1002_03345	0.58	-1.0
3,740,516	-		MIT1002_03345	0.59	-1.2
3,740,536	+		MIT1002_03345	0.60	+0.8
3,740,536	+		MIT1002_03345	0.60	+0.5
3,740,550	-		MIT1002_03345	0.60	-0.0
3,740,580	+		MIT1002_03345	0.61	-1.3
3,740,584	+		MIT1002_03345	0.62	-0.2
3,740,588	-		MIT1002_03345	0.62	+0.5
3,740,592	-		MIT1002_03345	0.62	-0.9
3,740,608	+		MIT1002_03345	0.63	-2.4
3,740,663	+		MIT1002_03345	0.65	-2.0
3,740,671	-		MIT1002_03345	0.65	-0.4
3,740,671	-		MIT1002_03345	0.65	-0.3
3,740,671	-		MIT1002_03345	0.65	+0.4
3,740,671	-		MIT1002_03345	0.65	+0.1
3,740,712	+		MIT1002_03345	0.67	+1.3
3,740,712	+		MIT1002_03345	0.67	+0.9
3,740,712	+		MIT1002_03345	0.67	+0.7
3,740,712	+		MIT1002_03345	0.67	+0.7
3,740,712	+		MIT1002_03345	0.67	+0.8
3,740,712	+		MIT1002_03345	0.67	-1.3
3,740,712	+		MIT1002_03345	0.67	-0.4
3,740,713	+		MIT1002_03345	0.67	-0.1
3,740,713	-		MIT1002_03345	0.67	+1.7
3,740,720	-		MIT1002_03345	0.68	-2.1
3,740,720	-		MIT1002_03345	0.68	+0.8
3,740,720	-		MIT1002_03345	0.68	+1.7
3,740,720	-		MIT1002_03345	0.68	-0.1
3,740,720	-		MIT1002_03345	0.68	-0.9
3,740,720	-		MIT1002_03345	0.68	+0.2
3,740,722	+		MIT1002_03345	0.68	-0.6
3,740,729	-		MIT1002_03345	0.68	+0.7
3,740,730	-		MIT1002_03345	0.68	-1.6
3,740,736	-		MIT1002_03345	0.68	-0.4
3,740,746	-		MIT1002_03345	0.69	+0.0
3,740,769	+		MIT1002_03345	0.70	+0.3
3,740,777	-		MIT1002_03345	0.70	-2.5
3,740,777	-		MIT1002_03345	0.70	-0.1
3,740,791	+		MIT1002_03345	0.71	-1.9
3,740,791	+		MIT1002_03345	0.71	+1.0
3,740,791	+		MIT1002_03345	0.71	+2.8
3,740,791	+		MIT1002_03345	0.71	+1.3
3,740,791	+		MIT1002_03345	0.71	-0.5
3,740,791	+		MIT1002_03345	0.71	-0.2
3,740,791	+		MIT1002_03345	0.71	-0.1
3,740,828	+		MIT1002_03345	0.72	+0.3
3,740,829	+		MIT1002_03345	0.72	+0.0
3,740,934	-		MIT1002_03345	0.77	-0.2
3,740,943	-		MIT1002_03345	0.77	-1.7
3,741,001	+		MIT1002_03345	0.80	-0.8
3,741,001	+		MIT1002_03345	0.80	+0.8
3,741,068	+		MIT1002_03345	0.83	-1.0
3,741,088	+		MIT1002_03345	0.84	+0.7
3,741,088	+		MIT1002_03345	0.84	-0.4
3,741,093	+		MIT1002_03345	0.84	-0.4
3,741,096	-		MIT1002_03345	0.84	+2.0
3,741,173	-		MIT1002_03345	0.87	+0.7
3,741,173	-		MIT1002_03345	0.87	+1.0
3,741,173	-		MIT1002_03345	0.87	-1.9
3,741,274	+				-0.4
3,741,282	-				+1.1
3,741,293	-				-1.6
3,741,698	+				+0.4
3,741,698	+				+0.9
3,741,698	+				+1.6
3,741,698	+				-0.7
3,741,706	-				-0.6
3,741,706	-				-0.4
3,741,706	-				+0.1
3,742,059	-		MIT1002_03346	0.13	-0.4
3,742,279	-		MIT1002_03346	0.50	+0.7
3,742,279	-		MIT1002_03346	0.50	-0.0
3,742,419	+		MIT1002_03346	0.73	+0.0
3,742,419	+		MIT1002_03346	0.73	-1.9
3,742,419	+		MIT1002_03346	0.73	-1.2
3,742,419	+		MIT1002_03346	0.73	-0.1
3,742,419	+		MIT1002_03346	0.73	+0.2
3,742,419	+		MIT1002_03346	0.73	+1.3
3,742,419	+		MIT1002_03346	0.73	-2.1
3,742,419	+		MIT1002_03346	0.73	+0.3
3,742,419	+		MIT1002_03346	0.73	+0.7
3,742,419	+		MIT1002_03346	0.73	+1.0
3,742,419	+		MIT1002_03346	0.73	+0.1
3,742,419	+		MIT1002_03346	0.73	-1.5
3,742,419	+		MIT1002_03346	0.73	-0.8
3,742,419	+		MIT1002_03346	0.73	-0.6
3,742,419	+		MIT1002_03346	0.73	-2.8
3,742,419	+		MIT1002_03346	0.73	+0.1
3,742,419	+		MIT1002_03346	0.73	-0.4
3,742,419	+		MIT1002_03346	0.73	+2.3
3,742,419	+		MIT1002_03346	0.73	-0.6
3,742,419	+		MIT1002_03346	0.73	+0.7
3,742,419	+		MIT1002_03346	0.73	-2.0
3,742,419	+		MIT1002_03346	0.73	+0.3
3,742,419	+		MIT1002_03346	0.73	-0.2
3,742,419	+		MIT1002_03346	0.73	+0.5
3,742,427	-		MIT1002_03346	0.75	-1.1
3,742,427	-		MIT1002_03346	0.75	-0.3
3,742,427	-		MIT1002_03346	0.75	+2.4
3,742,427	-		MIT1002_03346	0.75	+1.1
3,742,427	-		MIT1002_03346	0.75	-0.4
3,742,427	-		MIT1002_03346	0.75	+0.2
3,742,427	-		MIT1002_03346	0.75	+0.3
3,742,427	-		MIT1002_03346	0.75	-0.5
3,742,427	-		MIT1002_03346	0.75	-1.2
3,742,427	-		MIT1002_03346	0.75	-2.0
3,742,427	-		MIT1002_03346	0.75	+0.0
3,742,427	-		MIT1002_03346	0.75	-0.6
3,742,427	-		MIT1002_03346	0.75	-1.0
3,742,427	-		MIT1002_03346	0.75	-0.3
3,742,427	-		MIT1002_03346	0.75	-0.9
3,742,427	-		MIT1002_03346	0.75	-0.3
3,742,427	-		MIT1002_03346	0.75	+1.6
3,742,427	-		MIT1002_03346	0.75	+2.5
3,742,427	-		MIT1002_03346	0.75	+0.3
3,742,427	-		MIT1002_03346	0.75	+0.8
3,742,427	-		MIT1002_03346	0.75	+1.2
3,742,427	-		MIT1002_03346	0.75	-0.2
3,742,427	-		MIT1002_03346	0.75	-0.6