Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03324

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
3,711,194	+		MIT1002_03323	0.39	-2.2
3,711,218	+		MIT1002_03323	0.40	-2.2
3,711,226	-		MIT1002_03323	0.41	-1.3
3,711,266	-		MIT1002_03323	0.44	-1.2
3,711,418	+		MIT1002_03323	0.56	+0.7
3,711,517	+		MIT1002_03323	0.64	-1.9
3,711,524	+		MIT1002_03323	0.65	-1.9
3,711,525	-		MIT1002_03323	0.65	+1.1
3,711,525	-		MIT1002_03323	0.65	-1.5
3,711,525	-		MIT1002_03323	0.65	-0.6
3,711,562	+		MIT1002_03323	0.68	-2.7
3,711,562	+		MIT1002_03323	0.68	-1.3
3,711,562	+		MIT1002_03323	0.68	-2.2
3,711,622	+		MIT1002_03323	0.73	-0.4
3,711,648	-		MIT1002_03323	0.75	-3.2
3,711,677	+		MIT1002_03323	0.77	+1.5
3,711,684	+		MIT1002_03323	0.77	-4.0
3,711,685	-		MIT1002_03323	0.78	-2.3
3,711,691	+		MIT1002_03323	0.78	-0.2
3,711,708	-		MIT1002_03323	0.79	-1.8
3,711,715	+		MIT1002_03323	0.80	-2.6
3,711,722	+		MIT1002_03323	0.80	+0.1
3,711,722	+		MIT1002_03323	0.80	-2.8
3,711,722	+		MIT1002_03323	0.80	-2.0
3,711,722	+		MIT1002_03323	0.80	-2.7
3,711,723	-		MIT1002_03323	0.81	-2.1
3,711,723	-		MIT1002_03323	0.81	+1.5
3,711,730	-		MIT1002_03323	0.81	-0.9
3,711,730	-		MIT1002_03323	0.81	-2.1
3,711,732	+		MIT1002_03323	0.81	+0.1
3,711,740	-		MIT1002_03323	0.82	-1.4
3,711,740	-		MIT1002_03323	0.82	-0.3
3,711,740	-		MIT1002_03323	0.82	+1.1
3,711,771	+		MIT1002_03323	0.84	+0.5
3,711,771	+		MIT1002_03323	0.84	-1.7
3,711,859	-				-0.6
3,711,875	-				-0.5
3,711,893	-				-2.0
3,711,940	-				-3.3
3,711,995	+				+0.3
3,711,995	+				-5.4
3,711,995	+				-4.5
3,711,995	+				-1.0
3,712,039	-				-4.1
3,712,110	-				+0.6
3,712,120	-				-1.3
3,712,144	+				-1.7
3,712,205	+				+0.3
3,712,231	-				-0.5
3,712,241	+				+0.9
3,712,247	+				-0.3
3,712,311	+		MIT1002_03324	0.12	-1.3
3,712,364	-		MIT1002_03324	0.16	-0.3
3,712,387	-		MIT1002_03324	0.18	-1.2
3,712,435	+		MIT1002_03324	0.22	-0.6
3,712,543	+		MIT1002_03324	0.30	+0.8
3,712,588	+		MIT1002_03324	0.33	-0.9
3,712,603	+		MIT1002_03324	0.35	+0.3
3,712,665	+		MIT1002_03324	0.39	+2.9
3,712,665	+		MIT1002_03324	0.39	-0.4
3,712,670	+		MIT1002_03324	0.40	+0.3
3,712,673	-		MIT1002_03324	0.40	+0.1
3,712,673	-		MIT1002_03324	0.40	+0.1
3,712,767	-		MIT1002_03324	0.47	-2.3
3,712,767	-		MIT1002_03324	0.47	+0.1
3,712,790	+		MIT1002_03324	0.49	-1.4
3,712,837	+		MIT1002_03324	0.52	+1.0
3,712,845	-		MIT1002_03324	0.53	+0.8
3,712,845	-		MIT1002_03324	0.53	-0.8
3,712,893	-		MIT1002_03324	0.57	+0.5
3,712,914	+		MIT1002_03324	0.58	-0.2
3,712,922	-		MIT1002_03324	0.59	-1.0
3,712,922	-		MIT1002_03324	0.59	-0.3
3,712,952	-		MIT1002_03324	0.61	+0.5
3,713,015	+		MIT1002_03324	0.66	-0.7
3,713,023	-		MIT1002_03324	0.66	-0.7
3,713,146	-		MIT1002_03324	0.76	-1.1
3,713,184	+		MIT1002_03324	0.79	-1.4
3,713,189	+		MIT1002_03324	0.79	+1.0
3,713,189	+		MIT1002_03324	0.79	-2.1
3,713,311	-		MIT1002_03324	0.88	+0.0
3,713,353	+				+0.7
3,713,475	-				-0.4
3,713,475	-				-0.6
3,713,520	-				-2.2
3,713,620	+				-1.8
3,713,620	+				+0.0
3,713,627	-				-1.9
3,713,628	-				+0.5
3,713,628	-				+1.1
3,713,643	+				-0.4
3,713,699	-				-0.1
3,713,709	-				+0.7
3,713,797	-				+0.6
3,713,875	+		MIT1002_03325	0.16	+0.7
3,713,875	+		MIT1002_03325	0.16	+1.4
3,713,883	-		MIT1002_03325	0.17	+0.4
3,713,925	-		MIT1002_03325	0.22	-0.4
3,713,971	+		MIT1002_03325	0.27	+2.5
3,714,075	+		MIT1002_03325	0.39	+1.5
3,714,075	+		MIT1002_03325	0.39	+1.1
3,714,117	-		MIT1002_03325	0.44	+2.3
3,714,209	+		MIT1002_03325	0.54	-0.3
3,714,246	+		MIT1002_03325	0.58	+1.8
3,714,246	+		MIT1002_03325	0.58	+3.0
3,714,254	-		MIT1002_03325	0.59	+0.3
3,714,254	-		MIT1002_03325	0.59	+2.7
3,714,310	+		MIT1002_03325	0.65	+1.1
3,714,335	-		MIT1002_03325	0.68	+0.2
3,714,421	+		MIT1002_03325	0.78	+0.1
3,714,441	-		MIT1002_03325	0.80	+0.8
3,714,447	+		MIT1002_03325	0.81	-1.3
3,714,456	-		MIT1002_03325	0.82	-0.2