Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03232 and MIT1002_03233 are separated by 4 nucleotides MIT1002_03233 and MIT1002_03235 are separated by 641 nucleotides
MIT1002_03232: MIT1002_03232 - Transposase, at 3,601,232 to 3,602,275
_03232
MIT1002_03233: MIT1002_03233 - Group II intron-encoded protein LtrA, at 3,602,280 to 3,603,575
_03233
MIT1002_03235: MIT1002_03235 - Transposase, at 3,604,217 to 3,604,741
_03235
Position (kb)
3602
3603
3604 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3601.321 kb on + strand at 3601.377 kb on - strand, within MIT1002_03232 at 3601.472 kb on - strand, within MIT1002_03232 at 3601.487 kb on - strand, within MIT1002_03232 at 3601.492 kb on - strand, within MIT1002_03232 at 3601.609 kb on + strand, within MIT1002_03232 at 3601.612 kb on - strand, within MIT1002_03232 at 3601.617 kb on - strand, within MIT1002_03232 at 3601.617 kb on - strand, within MIT1002_03232 at 3601.633 kb on + strand, within MIT1002_03232 at 3601.645 kb on - strand, within MIT1002_03232 at 3601.733 kb on - strand, within MIT1002_03232 at 3601.826 kb on - strand, within MIT1002_03232 at 3601.831 kb on - strand, within MIT1002_03232 at 3601.839 kb on + strand, within MIT1002_03232 at 3601.854 kb on - strand, within MIT1002_03232 at 3601.854 kb on - strand, within MIT1002_03232 at 3601.977 kb on + strand, within MIT1002_03232 at 3602.079 kb on - strand, within MIT1002_03232 at 3602.081 kb on + strand, within MIT1002_03232 at 3602.136 kb on - strand, within MIT1002_03232 at 3602.194 kb on - strand at 3602.270 kb on + strand at 3602.277 kb on + strand at 3602.277 kb on + strand at 3602.285 kb on - strand at 3602.354 kb on + strand at 3602.362 kb on - strand at 3602.549 kb on + strand, within MIT1002_03233 at 3602.549 kb on + strand, within MIT1002_03233 at 3602.566 kb on + strand, within MIT1002_03233 at 3602.574 kb on - strand, within MIT1002_03233 at 3602.581 kb on + strand, within MIT1002_03233 at 3602.590 kb on - strand, within MIT1002_03233 at 3602.594 kb on + strand, within MIT1002_03233 at 3602.608 kb on + strand, within MIT1002_03233 at 3602.608 kb on + strand, within MIT1002_03233 at 3602.623 kb on + strand, within MIT1002_03233 at 3602.725 kb on + strand, within MIT1002_03233 at 3602.937 kb on + strand, within MIT1002_03233 at 3602.937 kb on + strand, within MIT1002_03233 at 3603.115 kb on + strand, within MIT1002_03233 at 3603.138 kb on - strand, within MIT1002_03233 at 3603.167 kb on + strand, within MIT1002_03233 at 3603.172 kb on + strand, within MIT1002_03233 at 3603.175 kb on - strand, within MIT1002_03233 at 3603.180 kb on - strand, within MIT1002_03233 at 3603.215 kb on + strand, within MIT1002_03233 at 3603.324 kb on - strand, within MIT1002_03233 at 3603.346 kb on - strand, within MIT1002_03233 at 3603.357 kb on - strand, within MIT1002_03233 at 3603.363 kb on - strand, within MIT1002_03233 at 3603.424 kb on - strand, within MIT1002_03233 at 3603.452 kb on - strand at 3603.457 kb on + strand at 3603.492 kb on - strand at 3603.557 kb on - strand at 3603.589 kb on + strand at 3603.589 kb on + strand at 3603.589 kb on + strand at 3603.597 kb on - strand at 3603.597 kb on - strand at 3603.643 kb on + strand at 3603.648 kb on + strand at 3603.648 kb on + strand at 3603.653 kb on + strand at 3603.670 kb on + strand at 3603.732 kb on + strand at 3603.798 kb on + strand at 3603.838 kb on + strand at 3603.838 kb on + strand at 3603.838 kb on + strand at 3603.838 kb on + strand at 3603.846 kb on - strand at 3603.851 kb on + strand at 3603.851 kb on - strand at 3603.887 kb on + strand at 3603.909 kb on + strand at 3603.912 kb on + strand at 3603.914 kb on + strand at 3603.917 kb on - strand at 3603.938 kb on + strand at 3603.943 kb on + strand at 3603.943 kb on + strand at 3603.946 kb on - strand at 3603.946 kb on - strand at 3603.951 kb on - strand at 3603.951 kb on - strand at 3604.043 kb on + strand at 3604.043 kb on + strand at 3604.048 kb on + strand at 3604.051 kb on - strand at 3604.066 kb on - strand at 3604.102 kb on + strand at 3604.102 kb on + strand at 3604.110 kb on - strand at 3604.110 kb on - strand at 3604.112 kb on - strand at 3604.174 kb on + strand at 3604.221 kb on - strand at 3604.361 kb on - strand, within MIT1002_03235 at 3604.378 kb on + strand, within MIT1002_03235 at 3604.383 kb on + strand, within MIT1002_03235 at 3604.386 kb on - strand, within MIT1002_03235 at 3604.393 kb on + strand, within MIT1002_03235 at 3604.442 kb on + strand, within MIT1002_03235 at 3604.442 kb on + strand, within MIT1002_03235 at 3604.442 kb on + strand, within MIT1002_03235 at 3604.442 kb on + strand, within MIT1002_03235 at 3604.450 kb on - strand, within MIT1002_03235 at 3604.450 kb on - strand, within MIT1002_03235 at 3604.460 kb on - strand, within MIT1002_03235 at 3604.488 kb on - strand, within MIT1002_03235 at 3604.530 kb on + strand, within MIT1002_03235 at 3604.530 kb on + strand, within MIT1002_03235 at 3604.538 kb on - strand, within MIT1002_03235 at 3604.540 kb on - strand, within MIT1002_03235
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 3,601,321 + -0.8 3,601,377 - MIT1002_03232 0.14 -0.4 3,601,472 - MIT1002_03232 0.23 -0.6 3,601,487 - MIT1002_03232 0.24 +1.0 3,601,492 - MIT1002_03232 0.25 +2.2 3,601,609 + MIT1002_03232 0.36 +1.7 3,601,612 - MIT1002_03232 0.36 -0.1 3,601,617 - MIT1002_03232 0.37 -2.2 3,601,617 - MIT1002_03232 0.37 -1.0 3,601,633 + MIT1002_03232 0.38 -0.5 3,601,645 - MIT1002_03232 0.40 +0.3 3,601,733 - MIT1002_03232 0.48 +1.3 3,601,826 - MIT1002_03232 0.57 +1.2 3,601,831 - MIT1002_03232 0.57 +0.2 3,601,839 + MIT1002_03232 0.58 -1.0 3,601,854 - MIT1002_03232 0.60 -1.3 3,601,854 - MIT1002_03232 0.60 +1.2 3,601,977 + MIT1002_03232 0.71 +3.2 3,602,079 - MIT1002_03232 0.81 -1.5 3,602,081 + MIT1002_03232 0.81 +2.5 3,602,136 - MIT1002_03232 0.87 +1.1 3,602,194 - +0.7 3,602,270 + +2.5 3,602,277 + -1.1 3,602,277 + -1.3 3,602,285 - +1.2 3,602,354 + +0.3 3,602,362 - -0.9 3,602,549 + MIT1002_03233 0.21 -1.1 3,602,549 + MIT1002_03233 0.21 -1.5 3,602,566 + MIT1002_03233 0.22 +1.3 3,602,574 - MIT1002_03233 0.23 +0.0 3,602,581 + MIT1002_03233 0.23 -0.7 3,602,590 - MIT1002_03233 0.24 -0.9 3,602,594 + MIT1002_03233 0.24 -0.1 3,602,608 + MIT1002_03233 0.25 +0.2 3,602,608 + MIT1002_03233 0.25 +2.1 3,602,623 + MIT1002_03233 0.26 +2.5 3,602,725 + MIT1002_03233 0.34 -0.3 3,602,937 + MIT1002_03233 0.51 -0.6 3,602,937 + MIT1002_03233 0.51 +0.1 3,603,115 + MIT1002_03233 0.64 -0.9 3,603,138 - MIT1002_03233 0.66 +2.0 3,603,167 + MIT1002_03233 0.68 +0.4 3,603,172 + MIT1002_03233 0.69 -0.0 3,603,175 - MIT1002_03233 0.69 +0.1 3,603,180 - MIT1002_03233 0.69 -0.6 3,603,215 + MIT1002_03233 0.72 -1.7 3,603,324 - MIT1002_03233 0.81 -2.5 3,603,346 - MIT1002_03233 0.82 -0.5 3,603,357 - MIT1002_03233 0.83 +0.6 3,603,363 - MIT1002_03233 0.84 +0.0 3,603,424 - MIT1002_03233 0.88 -2.1 3,603,452 - -0.1 3,603,457 + +2.2 3,603,492 - +0.2 3,603,557 - +0.9 3,603,589 + -0.6 3,603,589 + +1.2 3,603,589 + +0.9 3,603,597 - +0.8 3,603,597 - -0.2 3,603,643 + +0.3 3,603,648 + +0.1 3,603,648 + +0.7 3,603,653 + -1.1 3,603,670 + -1.9 3,603,732 + -1.9 3,603,798 + +2.4 3,603,838 + +1.2 3,603,838 + +0.9 3,603,838 + -2.4 3,603,838 + +1.2 3,603,846 - +0.0 3,603,851 + -0.1 3,603,851 - +0.9 3,603,887 + -0.0 3,603,909 + -1.3 3,603,912 + -0.4 3,603,914 + -2.1 3,603,917 - +0.3 3,603,938 + +2.1 3,603,943 + +0.2 3,603,943 + +0.0 3,603,946 - +0.1 3,603,946 - -0.4 3,603,951 - -1.0 3,603,951 - +1.4 3,604,043 + +0.3 3,604,043 + -1.2 3,604,048 + +0.6 3,604,051 - -0.2 3,604,066 - +0.1 3,604,102 + +1.5 3,604,102 + -1.5 3,604,110 - -0.4 3,604,110 - -0.3 3,604,112 - -0.2 3,604,174 + +0.6 3,604,221 - -0.1 3,604,361 - MIT1002_03235 0.27 +0.9 3,604,378 + MIT1002_03235 0.31 +0.0 3,604,383 + MIT1002_03235 0.32 -1.0 3,604,386 - MIT1002_03235 0.32 +0.6 3,604,393 + MIT1002_03235 0.34 -0.4 3,604,442 + MIT1002_03235 0.43 +0.4 3,604,442 + MIT1002_03235 0.43 +0.8 3,604,442 + MIT1002_03235 0.43 -0.5 3,604,442 + MIT1002_03235 0.43 +1.7 3,604,450 - MIT1002_03235 0.44 -0.3 3,604,450 - MIT1002_03235 0.44 -0.5 3,604,460 - MIT1002_03235 0.46 +0.9 3,604,488 - MIT1002_03235 0.52 +0.5 3,604,530 + MIT1002_03235 0.60 -0.9 3,604,530 + MIT1002_03235 0.60 -0.9 3,604,538 - MIT1002_03235 0.61 -1.1 3,604,540 - MIT1002_03235 0.62 +0.2
Or see this region's nucleotide sequence