Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02822

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02820 and MIT1002_02821 are separated by 10 nucleotidesMIT1002_02821 and MIT1002_02822 are separated by 2 nucleotidesMIT1002_02822 and MIT1002_02823 are separated by 19 nucleotidesMIT1002_02823 and MIT1002_02824 are separated by 46 nucleotides MIT1002_02820: MIT1002_02820 - putative membrane protein, at 3,124,525 to 3,124,941 _02820 MIT1002_02821: MIT1002_02821 - hypothetical protein, at 3,124,952 to 3,125,620 _02821 MIT1002_02822: MIT1002_02822 - Bifunctional glutathionylspermidine synthetase/amidase, at 3,125,623 to 3,126,789 _02822 MIT1002_02823: MIT1002_02823 - rhombosortase, at 3,126,809 to 3,127,348 _02823 MIT1002_02824: MIT1002_02824 - hypothetical protein, at 3,127,395 to 3,128,096 _02824 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -3 -2 -1 0 1at 3124.653 kb on + strand, within MIT1002_02820at 3124.697 kb on - strand, within MIT1002_02820at 3124.720 kb on + strand, within MIT1002_02820at 3124.877 kb on + strand, within MIT1002_02820at 3124.917 kb on - strandat 3124.917 kb on - strandat 3124.927 kb on + strandat 3124.945 kb on - strandat 3124.963 kb on + strandat 3124.969 kb on - strandat 3124.982 kb on + strandat 3124.982 kb on + strandat 3125.000 kb on + strandat 3125.030 kb on - strand, within MIT1002_02821at 3125.066 kb on - strand, within MIT1002_02821at 3125.145 kb on - strand, within MIT1002_02821at 3125.180 kb on + strand, within MIT1002_02821at 3125.180 kb on + strand, within MIT1002_02821at 3125.191 kb on - strand, within MIT1002_02821at 3125.209 kb on - strand, within MIT1002_02821at 3125.214 kb on + strand, within MIT1002_02821at 3125.237 kb on + strand, within MIT1002_02821at 3125.255 kb on + strand, within MIT1002_02821at 3125.255 kb on + strand, within MIT1002_02821at 3125.255 kb on + strand, within MIT1002_02821at 3125.288 kb on - strand, within MIT1002_02821at 3125.332 kb on + strand, within MIT1002_02821at 3125.351 kb on - strand, within MIT1002_02821at 3125.355 kb on + strand, within MIT1002_02821at 3125.400 kb on - strand, within MIT1002_02821at 3125.408 kb on - strand, within MIT1002_02821at 3125.436 kb on + strand, within MIT1002_02821at 3125.444 kb on - strand, within MIT1002_02821at 3125.444 kb on - strand, within MIT1002_02821at 3125.512 kb on + strand, within MIT1002_02821at 3125.522 kb on + strand, within MIT1002_02821at 3125.775 kb on + strand, within MIT1002_02822at 3125.783 kb on - strand, within MIT1002_02822at 3125.809 kb on - strand, within MIT1002_02822at 3125.831 kb on - strand, within MIT1002_02822at 3125.869 kb on + strand, within MIT1002_02822at 3125.869 kb on + strand, within MIT1002_02822at 3125.869 kb on + strand, within MIT1002_02822at 3125.869 kb on + strand, within MIT1002_02822at 3125.877 kb on - strand, within MIT1002_02822at 3125.925 kb on + strand, within MIT1002_02822at 3126.073 kb on - strand, within MIT1002_02822at 3126.075 kb on + strand, within MIT1002_02822at 3126.083 kb on - strand, within MIT1002_02822at 3126.158 kb on + strand, within MIT1002_02822at 3126.172 kb on + strand, within MIT1002_02822at 3126.180 kb on - strand, within MIT1002_02822at 3126.188 kb on - strand, within MIT1002_02822at 3126.190 kb on + strand, within MIT1002_02822at 3126.190 kb on + strand, within MIT1002_02822at 3126.190 kb on + strand, within MIT1002_02822at 3126.190 kb on + strand, within MIT1002_02822at 3126.190 kb on + strand, within MIT1002_02822at 3126.199 kb on + strand, within MIT1002_02822at 3126.205 kb on - strand, within MIT1002_02822at 3126.209 kb on + strand, within MIT1002_02822at 3126.209 kb on + strand, within MIT1002_02822at 3126.225 kb on + strand, within MIT1002_02822at 3126.262 kb on - strand, within MIT1002_02822at 3126.277 kb on - strand, within MIT1002_02822at 3126.314 kb on + strand, within MIT1002_02822at 3126.321 kb on + strand, within MIT1002_02822at 3126.374 kb on - strand, within MIT1002_02822at 3126.464 kb on + strand, within MIT1002_02822at 3126.520 kb on + strand, within MIT1002_02822at 3126.607 kb on + strand, within MIT1002_02822at 3126.671 kb on + strand, within MIT1002_02822at 3126.671 kb on + strand, within MIT1002_02822at 3126.679 kb on + strandat 3126.685 kb on - strandat 3126.687 kb on - strandat 3126.748 kb on - strandat 3126.803 kb on + strandat 3126.918 kb on - strand, within MIT1002_02823at 3126.918 kb on - strand, within MIT1002_02823at 3126.918 kb on - strand, within MIT1002_02823at 3126.922 kb on + strand, within MIT1002_02823at 3126.923 kb on - strand, within MIT1002_02823at 3126.932 kb on - strand, within MIT1002_02823at 3126.940 kb on - strand, within MIT1002_02823at 3126.940 kb on - strand, within MIT1002_02823at 3126.973 kb on + strand, within MIT1002_02823at 3126.981 kb on - strand, within MIT1002_02823at 3127.027 kb on + strand, within MIT1002_02823at 3127.075 kb on - strand, within MIT1002_02823at 3127.081 kb on + strand, within MIT1002_02823at 3127.081 kb on + strand, within MIT1002_02823at 3127.089 kb on - strand, within MIT1002_02823at 3127.333 kb on + strandat 3127.341 kb on - strandat 3127.341 kb on - strandat 3127.373 kb on + strandat 3127.381 kb on - strandat 3127.618 kb on + strand, within MIT1002_02824at 3127.626 kb on - strand, within MIT1002_02824at 3127.643 kb on - strand, within MIT1002_02824at 3127.653 kb on - strand, within MIT1002_02824at 3127.659 kb on + strand, within MIT1002_02824at 3127.689 kb on + strand, within MIT1002_02824at 3127.783 kb on + strand, within MIT1002_02824

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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3,124,653 + MIT1002_02820 0.31 -0.2
3,124,697 - MIT1002_02820 0.41 -0.4
3,124,720 + MIT1002_02820 0.47 +0.1
3,124,877 + MIT1002_02820 0.84 -1.8
3,124,917 - -0.3
3,124,917 - -2.0
3,124,927 + +0.4
3,124,945 - -0.4
3,124,963 + -2.2
3,124,969 - +0.2
3,124,982 + +1.0
3,124,982 + +0.3
3,125,000 + +0.2
3,125,030 - MIT1002_02821 0.12 -1.4
3,125,066 - MIT1002_02821 0.17 +0.4
3,125,145 - MIT1002_02821 0.29 -0.9
3,125,180 + MIT1002_02821 0.34 +0.5
3,125,180 + MIT1002_02821 0.34 +1.6
3,125,191 - MIT1002_02821 0.36 +0.6
3,125,209 - MIT1002_02821 0.38 +0.6
3,125,214 + MIT1002_02821 0.39 +0.5
3,125,237 + MIT1002_02821 0.43 -2.0
3,125,255 + MIT1002_02821 0.45 -1.5
3,125,255 + MIT1002_02821 0.45 +0.9
3,125,255 + MIT1002_02821 0.45 +1.1
3,125,288 - MIT1002_02821 0.50 +0.3
3,125,332 + MIT1002_02821 0.57 -0.3
3,125,351 - MIT1002_02821 0.60 +0.4
3,125,355 + MIT1002_02821 0.60 -0.7
3,125,400 - MIT1002_02821 0.67 +0.5
3,125,408 - MIT1002_02821 0.68 +0.1
3,125,436 + MIT1002_02821 0.72 -0.6
3,125,444 - MIT1002_02821 0.74 -1.8
3,125,444 - MIT1002_02821 0.74 -2.1
3,125,512 + MIT1002_02821 0.84 +0.8
3,125,522 + MIT1002_02821 0.85 +1.4
3,125,775 + MIT1002_02822 0.13 -2.4
3,125,783 - MIT1002_02822 0.14 -0.5
3,125,809 - MIT1002_02822 0.16 +0.6
3,125,831 - MIT1002_02822 0.18 -0.4
3,125,869 + MIT1002_02822 0.21 +1.6
3,125,869 + MIT1002_02822 0.21 +1.0
3,125,869 + MIT1002_02822 0.21 +0.3
3,125,869 + MIT1002_02822 0.21 -1.3
3,125,877 - MIT1002_02822 0.22 -1.7
3,125,925 + MIT1002_02822 0.26 -1.9
3,126,073 - MIT1002_02822 0.39 -1.1
3,126,075 + MIT1002_02822 0.39 +1.3
3,126,083 - MIT1002_02822 0.39 +0.1
3,126,158 + MIT1002_02822 0.46 -0.0
3,126,172 + MIT1002_02822 0.47 -0.6
3,126,180 - MIT1002_02822 0.48 -0.4
3,126,188 - MIT1002_02822 0.48 -0.3
3,126,190 + MIT1002_02822 0.49 -0.5
3,126,190 + MIT1002_02822 0.49 -2.6
3,126,190 + MIT1002_02822 0.49 -1.5
3,126,190 + MIT1002_02822 0.49 -1.0
3,126,190 + MIT1002_02822 0.49 -0.9
3,126,199 + MIT1002_02822 0.49 -2.8
3,126,205 - MIT1002_02822 0.50 +0.1
3,126,209 + MIT1002_02822 0.50 -0.9
3,126,209 + MIT1002_02822 0.50 -0.8
3,126,225 + MIT1002_02822 0.52 +1.3
3,126,262 - MIT1002_02822 0.55 -0.9
3,126,277 - MIT1002_02822 0.56 -0.4
3,126,314 + MIT1002_02822 0.59 -1.2
3,126,321 + MIT1002_02822 0.60 +1.0
3,126,374 - MIT1002_02822 0.64 -1.2
3,126,464 + MIT1002_02822 0.72 -1.1
3,126,520 + MIT1002_02822 0.77 -1.1
3,126,607 + MIT1002_02822 0.84 +1.7
3,126,671 + MIT1002_02822 0.90 -0.2
3,126,671 + MIT1002_02822 0.90 -0.1
3,126,679 + -0.1
3,126,685 - +1.5
3,126,687 - -0.8
3,126,748 - +0.3
3,126,803 + +1.1
3,126,918 - MIT1002_02823 0.20 -0.2
3,126,918 - MIT1002_02823 0.20 -0.5
3,126,918 - MIT1002_02823 0.20 -1.2
3,126,922 + MIT1002_02823 0.21 -0.1
3,126,923 - MIT1002_02823 0.21 +0.9
3,126,932 - MIT1002_02823 0.23 -1.4
3,126,940 - MIT1002_02823 0.24 -0.4
3,126,940 - MIT1002_02823 0.24 -0.3
3,126,973 + MIT1002_02823 0.30 -1.7
3,126,981 - MIT1002_02823 0.32 -0.4
3,127,027 + MIT1002_02823 0.40 -3.3
3,127,075 - MIT1002_02823 0.49 +1.0
3,127,081 + MIT1002_02823 0.50 -0.9
3,127,081 + MIT1002_02823 0.50 -1.1
3,127,089 - MIT1002_02823 0.52 +0.9
3,127,333 + +0.1
3,127,341 - -2.5
3,127,341 - -0.7
3,127,373 + -1.5
3,127,381 - -0.9
3,127,618 + MIT1002_02824 0.32 +1.5
3,127,626 - MIT1002_02824 0.33 -0.7
3,127,643 - MIT1002_02824 0.35 +0.1
3,127,653 - MIT1002_02824 0.37 -0.7
3,127,659 + MIT1002_02824 0.38 +0.3
3,127,689 + MIT1002_02824 0.42 +0.5
3,127,783 + MIT1002_02824 0.55 -0.5

Or see this region's nucleotide sequence