Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02768

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02762 and MIT1002_02763 are separated by 42 nucleotidesMIT1002_02763 and MIT1002_02764 are separated by 7 nucleotidesMIT1002_02764 and MIT1002_02765 are separated by 169 nucleotidesMIT1002_02765 and MIT1002_02766 are separated by 42 nucleotidesMIT1002_02766 and MIT1002_02767 are separated by 7 nucleotidesMIT1002_02767 and MIT1002_02768 are separated by 88 nucleotidesMIT1002_02768 and MIT1002_02769 are separated by 24 nucleotidesMIT1002_02769 and MIT1002_02770 are separated by 346 nucleotides MIT1002_02762: MIT1002_02762 - tRNA-Pro, at 3,069,116 to 3,069,192 _02762 MIT1002_02763: MIT1002_02763 - tRNA-Leu, at 3,069,235 to 3,069,319 _02763 MIT1002_02764: MIT1002_02764 - tRNA-His, at 3,069,327 to 3,069,402 _02764 MIT1002_02765: MIT1002_02765 - tRNA-Pro, at 3,069,572 to 3,069,648 _02765 MIT1002_02766: MIT1002_02766 - tRNA-Leu, at 3,069,691 to 3,069,775 _02766 MIT1002_02767: MIT1002_02767 - tRNA-His, at 3,069,783 to 3,069,858 _02767 MIT1002_02768: MIT1002_02768 - tRNA-Arg, at 3,069,947 to 3,070,023 _02768 MIT1002_02769: MIT1002_02769 - tRNA-Pro, at 3,070,048 to 3,070,124 _02769 MIT1002_02770: MIT1002_02770 - hypothetical protein, at 3,070,471 to 3,071,325 _02770 Position (kb) 3069 3070 3071Strain fitness (log2 ratio) -2 -1 0 1at 3068.974 kb on + strandat 3068.982 kb on - strandat 3068.982 kb on - strandat 3069.118 kb on - strandat 3069.147 kb on - strand, within MIT1002_02762at 3069.170 kb on + strand, within MIT1002_02762at 3069.180 kb on + strand, within MIT1002_02762at 3069.258 kb on - strand, within MIT1002_02763at 3069.405 kb on + strandat 3069.408 kb on - strandat 3069.413 kb on - strandat 3069.463 kb on + strandat 3069.662 kb on + strandat 3070.295 kb on - strandat 3070.332 kb on - strandat 3070.390 kb on + strandat 3070.398 kb on - strandat 3070.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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3,068,974 + -0.7
3,068,982 - -0.2
3,068,982 - -1.3
3,069,118 - -1.9
3,069,147 - MIT1002_02762 0.40 +1.1
3,069,170 + MIT1002_02762 0.70 -1.2
3,069,180 + MIT1002_02762 0.83 -0.2
3,069,258 - MIT1002_02763 0.27 -0.4
3,069,405 + -0.2
3,069,408 - +0.3
3,069,413 - -0.7
3,069,463 + -0.6
3,069,662 + +0.4
3,070,295 - +0.6
3,070,332 - -2.2
3,070,390 + -0.2
3,070,398 - +0.1
3,070,432 + -1.6

Or see this region's nucleotide sequence