Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02558

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
2,853,996	+		MIT1002_02557	0.83	+1.3
2,854,050	+		MIT1002_02557	0.84	+1.3
2,854,050	+		MIT1002_02557	0.84	-0.5
2,854,187	+		MIT1002_02557	0.87	-1.5
2,854,194	-		MIT1002_02557	0.88	-1.0
2,854,302	+				-0.3
2,854,395	+				-2.3
2,854,427	+				-0.7
2,854,445	-				-2.0
2,854,465	+				-1.9
2,854,573	-				-0.8
2,854,593	+				-2.1
2,854,603	+				-0.3
2,854,698	+				-0.8
2,854,713	+				+0.2
2,854,740	-				+0.4
2,854,752	+				-0.8
2,854,885	-				-1.5
2,854,989	-				+0.1
2,855,004	+				-1.7
2,855,012	-				+0.8
2,855,089	-				-0.7
2,855,089	-				+0.2
2,855,137	-				-1.1
2,855,167	-				-1.5
2,855,188	+				-0.6
2,855,201	-				+0.1
2,855,304	+		MIT1002_02558	0.12	-0.1
2,855,352	+		MIT1002_02558	0.14	-1.6
2,855,416	-		MIT1002_02558	0.16	-0.8
2,855,416	-		MIT1002_02558	0.16	+1.6
2,855,417	-		MIT1002_02558	0.16	-0.3
2,855,418	+		MIT1002_02558	0.16	+0.6
2,855,426	-		MIT1002_02558	0.16	-0.3
2,855,437	-		MIT1002_02558	0.17	-1.0
2,855,437	-		MIT1002_02558	0.17	-1.4
2,855,459	-		MIT1002_02558	0.18	-0.9
2,855,563	+		MIT1002_02558	0.21	-2.6
2,855,563	+		MIT1002_02558	0.21	-0.9
2,855,597	+		MIT1002_02558	0.23	+0.2
2,855,599	-		MIT1002_02558	0.23	+0.3
2,855,605	-		MIT1002_02558	0.23	+1.1
2,855,653	-		MIT1002_02558	0.25	-1.4
2,855,685	+		MIT1002_02558	0.26	+0.5
2,855,694	-		MIT1002_02558	0.26	-0.2
2,855,829	-		MIT1002_02558	0.31	-0.6
2,855,905	+		MIT1002_02558	0.34	-0.1
2,855,913	-		MIT1002_02558	0.34	-0.4
2,855,945	-		MIT1002_02558	0.35	-1.0
2,855,953	+		MIT1002_02558	0.36	+0.3
2,856,034	+		MIT1002_02558	0.39	-0.7
2,856,052	-		MIT1002_02558	0.39	-0.1
2,856,144	+		MIT1002_02558	0.43	+0.8
2,856,160	+		MIT1002_02558	0.43	-0.5
2,856,186	+		MIT1002_02558	0.44	-1.6
2,856,203	-		MIT1002_02558	0.45	+0.2
2,856,253	+		MIT1002_02558	0.46	+0.3
2,856,261	+		MIT1002_02558	0.47	+1.3
2,856,294	-		MIT1002_02558	0.48	-1.2
2,856,296	+		MIT1002_02558	0.48	-0.2
2,856,323	+		MIT1002_02558	0.49	+0.0
2,856,336	-		MIT1002_02558	0.49	-1.3
2,856,429	+		MIT1002_02558	0.53	+0.4
2,856,437	+		MIT1002_02558	0.53	-1.1
2,856,454	+		MIT1002_02558	0.54	+0.1
2,856,482	-		MIT1002_02558	0.55	+0.7
2,856,484	+		MIT1002_02558	0.55	-0.2
2,856,503	-		MIT1002_02558	0.56	-1.5
2,856,506	+		MIT1002_02558	0.56	+0.2
2,856,550	-		MIT1002_02558	0.57	-1.3
2,856,550	-		MIT1002_02558	0.57	-1.5
2,856,551	-		MIT1002_02558	0.57	-2.3
2,856,553	+		MIT1002_02558	0.57	+0.7
2,856,553	+		MIT1002_02558	0.57	-0.9
2,856,553	+		MIT1002_02558	0.57	-2.0
2,856,553	+		MIT1002_02558	0.57	+0.0
2,856,561	-		MIT1002_02558	0.58	+1.7
2,856,561	-		MIT1002_02558	0.58	+0.5
2,856,588	+		MIT1002_02558	0.59	-1.7
2,856,684	-		MIT1002_02558	0.62	-0.5
2,856,737	+		MIT1002_02558	0.64	-0.5
2,856,743	-		MIT1002_02558	0.64	+2.0
2,856,776	+		MIT1002_02558	0.65	-0.7
2,856,828	+		MIT1002_02558	0.67	+0.3
2,856,833	+		MIT1002_02558	0.68	+0.0
2,856,841	-		MIT1002_02558	0.68	-1.6
2,856,952	+		MIT1002_02558	0.72	-0.2
2,856,960	+		MIT1002_02558	0.72	+1.0
2,856,960	+		MIT1002_02558	0.72	+2.0
2,856,960	+		MIT1002_02558	0.72	-0.4
2,856,968	-		MIT1002_02558	0.72	+0.3
2,856,970	+		MIT1002_02558	0.73	-2.2
2,856,970	+		MIT1002_02558	0.73	-1.1
2,856,970	+		MIT1002_02558	0.73	-0.8
2,856,970	+		MIT1002_02558	0.73	-0.4
2,856,970	+		MIT1002_02558	0.73	-0.6
2,856,978	-		MIT1002_02558	0.73	-1.4
2,856,978	-		MIT1002_02558	0.73	+0.4
2,856,978	-		MIT1002_02558	0.73	-0.5
2,856,978	-		MIT1002_02558	0.73	-2.0
2,856,978	-		MIT1002_02558	0.73	-2.7
2,856,978	-		MIT1002_02558	0.73	+0.7
2,856,981	+		MIT1002_02558	0.73	-0.2
2,856,981	+		MIT1002_02558	0.73	-0.2
2,857,067	-		MIT1002_02558	0.76	-0.4
2,857,126	-		MIT1002_02558	0.78	+1.4
2,857,180	-		MIT1002_02558	0.80	-0.1
2,857,206	+		MIT1002_02558	0.81	-1.3
2,857,211	+		MIT1002_02558	0.81	+0.3
2,857,284	-		MIT1002_02558	0.84	-0.3
2,857,287	+		MIT1002_02558	0.84	-0.6
2,857,293	-		MIT1002_02558	0.84	+0.9
2,857,399	-		MIT1002_02558	0.88	-2.5
2,857,399	-		MIT1002_02558	0.88	+0.6
2,857,413	+		MIT1002_02558	0.89	+0.0
2,857,423	+		MIT1002_02558	0.89	+0.7
2,857,450	+		MIT1002_02558	0.90	-0.7
2,857,463	+				-1.1
2,857,525	+				+0.5
2,857,549	+				+0.1
2,857,550	+				-0.8
2,857,557	+				-0.5
2,857,565	-				+0.3
2,857,576	+				+0.2
2,857,657	+				-0.4
2,857,678	+				+2.2
2,857,678	+				-0.8
2,857,712	+				+1.7
2,857,719	-				-0.8
2,857,720	-				+1.3
2,857,742	-				+0.3
2,857,742	-				+0.4
2,857,834	+				+0.1
2,857,953	-				-0.1
2,858,012	+		MIT1002_02559	0.28	-1.1
2,858,176	-		MIT1002_02559	0.83	+0.7
2,858,176	-		MIT1002_02559	0.83	+0.8
2,858,206	-				+3.3
2,858,225	+				-0.3
2,858,295	+				-1.8
2,858,305	-				+1.2
2,858,311	+				-1.6
2,858,341	-				+0.7
2,858,354	-				-0.8
2,858,405	+				+0.7
2,858,405	+				-1.6
2,858,422	+				-0.1
2,858,432	-				-0.1
2,858,433	-				+1.0
2,858,469	+		MIT1002_02560	0.13	-0.8
2,858,505	+		MIT1002_02560	0.16	-2.0
2,858,505	+		MIT1002_02560	0.16	-2.4
2,858,528	+		MIT1002_02560	0.18	+0.9
2,858,540	+		MIT1002_02560	0.19	-0.3
2,858,548	-		MIT1002_02560	0.20	-0.4
2,858,579	+		MIT1002_02560	0.22	+0.4
2,858,589	-		MIT1002_02560	0.23	-0.7
2,858,619	-		MIT1002_02560	0.26	-0.9
2,858,654	-		MIT1002_02560	0.29	+2.9
2,858,687	+		MIT1002_02560	0.31	-0.8
2,858,687	+		MIT1002_02560	0.31	-0.5