Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02456

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
2,746,515	+		MIT1002_02455	0.60	+0.1
2,746,524	+		MIT1002_02455	0.61	-2.4
2,746,539	-		MIT1002_02455	0.62	-0.2
2,746,539	-		MIT1002_02455	0.62	-0.6
2,746,606	+		MIT1002_02455	0.65	-1.3
2,746,651	+		MIT1002_02455	0.67	-0.6
2,746,659	-		MIT1002_02455	0.68	-0.5
2,746,659	-		MIT1002_02455	0.68	+0.3
2,746,659	-		MIT1002_02455	0.68	-1.2
2,746,676	+		MIT1002_02455	0.69	-1.2
2,746,710	-		MIT1002_02455	0.71	-1.2
2,746,727	+		MIT1002_02455	0.71	-0.8
2,746,772	+		MIT1002_02455	0.74	+0.3
2,746,772	+		MIT1002_02455	0.74	-1.3
2,746,780	-		MIT1002_02455	0.74	-2.5
2,746,833	-		MIT1002_02455	0.77	+0.3
2,746,861	+		MIT1002_02455	0.78	-0.3
2,746,873	+		MIT1002_02455	0.79	-0.6
2,746,956	+		MIT1002_02455	0.83	-1.0
2,746,964	-		MIT1002_02455	0.84	-1.2
2,746,974	-		MIT1002_02455	0.84	+2.9
2,746,980	+		MIT1002_02455	0.85	-1.3
2,747,011	-		MIT1002_02455	0.86	+0.1
2,747,042	+		MIT1002_02455	0.88	-0.4
2,747,113	+				-1.3
2,747,115	+				-1.3
2,747,189	+				-0.3
2,747,297	+				-1.9
2,747,302	+				-1.6
2,747,302	+				-0.4
2,747,307	+				+0.0
2,747,315	-				-1.1
2,747,479	+				+2.3
2,747,482	-				-0.2
2,747,492	-				-0.7
2,747,621	+		MIT1002_02456	0.55	-0.8
2,747,629	-		MIT1002_02456	0.58	-0.1
2,747,638	+		MIT1002_02456	0.62	+0.3
2,747,699	+		MIT1002_02456	0.86	+2.0
2,747,699	+		MIT1002_02456	0.86	+0.1
2,747,699	+		MIT1002_02456	0.86	-1.2
2,747,699	+		MIT1002_02456	0.86	-0.1
2,747,699	+		MIT1002_02456	0.86	-1.4
2,747,699	+		MIT1002_02456	0.86	-1.9
2,747,699	+		MIT1002_02456	0.86	-1.8
2,747,699	+		MIT1002_02456	0.86	-0.9
2,747,699	+		MIT1002_02456	0.86	-0.9
2,747,699	+		MIT1002_02456	0.86	+1.3
2,747,699	+		MIT1002_02456	0.86	+1.7
2,747,699	+		MIT1002_02456	0.86	-0.7
2,747,699	+		MIT1002_02456	0.86	+1.0
2,747,699	+		MIT1002_02456	0.86	+0.8
2,747,699	+		MIT1002_02456	0.86	+0.7
2,747,707	-		MIT1002_02456	0.89	+1.1
2,747,707	-		MIT1002_02456	0.89	+1.5
2,747,707	-		MIT1002_02456	0.89	-0.3
2,747,707	-		MIT1002_02456	0.89	-1.0
2,747,707	-		MIT1002_02456	0.89	+1.3
2,747,707	-		MIT1002_02456	0.89	+1.7
2,747,707	-		MIT1002_02456	0.89	-0.1
2,747,707	-		MIT1002_02456	0.89	-1.1
2,747,707	-		MIT1002_02456	0.89	+0.1
2,747,707	-		MIT1002_02456	0.89	-1.7
2,747,707	-		MIT1002_02456	0.89	+1.0
2,747,707	-		MIT1002_02456	0.89	-1.8
2,747,707	-		MIT1002_02456	0.89	+0.1
2,747,707	-		MIT1002_02456	0.89	-0.2
2,747,707	-		MIT1002_02456	0.89	+0.4
2,747,707	-		MIT1002_02456	0.89	+0.0
2,747,819	-				-0.5
2,747,830	+				-1.3
2,747,838	+				+0.8
2,747,838	+				-0.7
2,747,845	+				-0.4
2,747,847	+				-0.2
2,747,858	-				+1.0
2,747,859	+				-0.9
2,747,920	-				+0.3
2,747,957	-		MIT1002_02457	0.15	+1.2
2,748,041	+		MIT1002_02457	0.36	+0.5
2,748,054	+		MIT1002_02457	0.39	+0.8
2,748,160	-		MIT1002_02457	0.65	+1.0
2,748,175	-		MIT1002_02457	0.69	+0.1
2,748,235	-		MIT1002_02457	0.83	-0.3
2,748,240	-		MIT1002_02457	0.85	-0.2
2,748,240	-		MIT1002_02457	0.85	-1.0
2,748,240	-		MIT1002_02457	0.85	+0.5
2,748,247	-		MIT1002_02457	0.86	-0.1
2,748,266	+				+0.3
2,748,347	-				-0.3
2,748,378	+				+1.1
2,748,386	-				-2.6
2,748,487	-				+1.1
2,748,539	+		MIT1002_02458	0.14	-1.0
2,748,539	+		MIT1002_02458	0.14	+0.4
2,748,539	+		MIT1002_02458	0.14	-1.4
2,748,547	-		MIT1002_02458	0.15	+0.1
2,748,547	-		MIT1002_02458	0.15	-0.6
2,748,547	-		MIT1002_02458	0.15	+0.7
2,748,547	-		MIT1002_02458	0.15	-0.5
2,748,567	+		MIT1002_02458	0.17	-0.8
2,748,669	-		MIT1002_02458	0.28	-0.2
2,748,686	+		MIT1002_02458	0.30	-2.7
2,748,686	+		MIT1002_02458	0.30	+1.3
2,748,686	+		MIT1002_02458	0.30	+1.9
2,748,686	+		MIT1002_02458	0.30	-2.7
2,748,686	+		MIT1002_02458	0.30	-1.3
2,748,694	-		MIT1002_02458	0.31	-1.9
2,748,694	-		MIT1002_02458	0.31	-0.7