Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02392

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
2,666,077	+				+0.3
2,666,186	+				-3.2
2,666,194	-		MIT1002_02390	0.12	+0.2
2,666,242	-		MIT1002_02390	0.29	-2.3
2,666,245	+		MIT1002_02390	0.30	+0.3
2,666,281	-		MIT1002_02390	0.42	-2.9
2,666,330	+		MIT1002_02390	0.59	+0.1
2,666,358	-		MIT1002_02390	0.68	-0.1
2,666,406	+		MIT1002_02390	0.84	-0.4
2,666,428	+				-1.6
2,666,436	-				-0.8
2,666,436	-				-3.0
2,666,487	+		MIT1002_02391	0.11	-2.1
2,666,774	-				-1.4
2,666,779	+				+0.1
2,666,908	-				+0.6
2,666,936	+				+2.0
2,666,999	-				-2.5
2,667,009	+				-2.0
2,667,019	+				-1.1
2,667,019	+				+0.4
2,667,068	+				+0.2
2,667,111	-				+0.5
2,667,164	+				-1.9
2,667,192	-				+0.4
2,667,248	-		MIT1002_02392	0.12	-0.1
2,667,261	-		MIT1002_02392	0.13	-0.4
2,667,310	+		MIT1002_02392	0.16	+0.6
2,667,310	+		MIT1002_02392	0.16	-1.6
2,667,310	+		MIT1002_02392	0.16	-0.5
2,667,310	+		MIT1002_02392	0.16	-0.7
2,667,318	-		MIT1002_02392	0.17	-0.0
2,667,318	-		MIT1002_02392	0.17	+0.3
2,667,362	+		MIT1002_02392	0.19	+0.4
2,667,382	+		MIT1002_02392	0.20	-0.6
2,667,403	+		MIT1002_02392	0.22	+0.9
2,667,443	-		MIT1002_02392	0.24	-0.4
2,667,472	+		MIT1002_02392	0.26	-1.5
2,667,480	-		MIT1002_02392	0.26	-1.2
2,667,515	-		MIT1002_02392	0.28	-0.7
2,667,519	+		MIT1002_02392	0.29	+0.3
2,667,519	+		MIT1002_02392	0.29	-0.2
2,667,527	-		MIT1002_02392	0.29	-0.7
2,667,529	+		MIT1002_02392	0.29	-0.9
2,667,542	+		MIT1002_02392	0.30	-0.5
2,667,542	+		MIT1002_02392	0.30	-0.9
2,667,550	-		MIT1002_02392	0.31	+1.4
2,667,557	-		MIT1002_02392	0.31	+1.6
2,667,579	+		MIT1002_02392	0.32	+0.4
2,667,579	+		MIT1002_02392	0.32	-1.2
2,667,587	-		MIT1002_02392	0.33	+0.1
2,667,594	-		MIT1002_02392	0.33	-2.4
2,667,594	-		MIT1002_02392	0.33	-0.9
2,667,594	-		MIT1002_02392	0.33	-1.0
2,667,594	-		MIT1002_02392	0.33	-0.6
2,667,629	-		MIT1002_02392	0.35	+0.7
2,667,659	+		MIT1002_02392	0.37	-0.5
2,667,677	+		MIT1002_02392	0.38	+0.6
2,667,677	+		MIT1002_02392	0.38	-1.0
2,667,683	-		MIT1002_02392	0.39	-1.1
2,667,685	-		MIT1002_02392	0.39	-0.6
2,667,756	+		MIT1002_02392	0.43	-0.5
2,667,761	+		MIT1002_02392	0.43	-2.7
2,667,761	+		MIT1002_02392	0.43	+0.6
2,667,761	+		MIT1002_02392	0.43	+1.0
2,667,761	+		MIT1002_02392	0.43	-0.3
2,667,761	+		MIT1002_02392	0.43	-0.1
2,667,761	+		MIT1002_02392	0.43	+1.2
2,667,764	-		MIT1002_02392	0.43	-1.2
2,667,769	-		MIT1002_02392	0.44	+1.6
2,667,769	-		MIT1002_02392	0.44	+1.1
2,667,769	-		MIT1002_02392	0.44	+0.4
2,667,769	-		MIT1002_02392	0.44	-1.2
2,667,769	-		MIT1002_02392	0.44	-1.5
2,667,769	-		MIT1002_02392	0.44	-0.2
2,667,791	-		MIT1002_02392	0.45	-0.0
2,667,797	+		MIT1002_02392	0.45	-0.5
2,667,797	+		MIT1002_02392	0.45	+0.7
2,667,850	+		MIT1002_02392	0.49	+0.9
2,667,857	+		MIT1002_02392	0.49	+0.3
2,667,857	+		MIT1002_02392	0.49	-0.1
2,667,858	-		MIT1002_02392	0.49	-0.3
2,667,865	-		MIT1002_02392	0.49	-0.2
2,667,909	+		MIT1002_02392	0.52	-0.9
2,667,917	-		MIT1002_02392	0.53	-0.2
2,667,924	+		MIT1002_02392	0.53	-1.2
2,667,954	+		MIT1002_02392	0.55	+1.7
2,668,101	-		MIT1002_02392	0.64	-0.1
2,668,171	+		MIT1002_02392	0.68	+1.1
2,668,221	+		MIT1002_02392	0.71	-0.6
2,668,277	-		MIT1002_02392	0.74	+1.1
2,668,308	+		MIT1002_02392	0.76	+1.1
2,668,457	-		MIT1002_02392	0.85	-1.1
2,668,473	+		MIT1002_02392	0.86	+0.5
2,668,473	+		MIT1002_02392	0.86	-1.2
2,668,473	+		MIT1002_02392	0.86	-0.7
2,668,473	+		MIT1002_02392	0.86	+0.7
2,668,481	-		MIT1002_02392	0.87	-0.3
2,668,481	-		MIT1002_02392	0.87	+0.3
2,668,481	-		MIT1002_02392	0.87	-0.8
2,668,481	-		MIT1002_02392	0.87	-1.6
2,668,481	-		MIT1002_02392	0.87	-0.4
2,668,481	-		MIT1002_02392	0.87	+1.5
2,668,481	-		MIT1002_02392	0.87	+0.3
2,668,481	-		MIT1002_02392	0.87	-2.0
2,668,627	+				-0.2
2,668,630	-				-0.2
2,668,673	-				-0.9
2,668,696	-				-1.8
2,668,887	+				-1.2
2,668,887	+				-0.6
2,668,892	+				-0.1
2,668,895	-				+0.9
2,669,006	+		MIT1002_02393	0.17	-0.9
2,669,006	+		MIT1002_02393	0.17	-0.3
2,669,014	-		MIT1002_02393	0.18	-0.1
2,669,014	-		MIT1002_02393	0.18	-1.2
2,669,019	-		MIT1002_02393	0.18	-0.8
2,669,019	-		MIT1002_02393	0.18	-0.7
2,669,140	-		MIT1002_02393	0.29	-0.9
2,669,165	+		MIT1002_02393	0.31	-0.0
2,669,215	+		MIT1002_02393	0.35	+1.0
2,669,258	+		MIT1002_02393	0.39	+0.4
2,669,282	-		MIT1002_02393	0.41	+1.2
2,669,293	+		MIT1002_02393	0.42	+1.6
2,669,294	-		MIT1002_02393	0.42	-1.5
2,669,309	-		MIT1002_02393	0.44	-2.2
2,669,345	-		MIT1002_02393	0.47	-1.0
2,669,349	+		MIT1002_02393	0.47	-0.5
2,669,410	-		MIT1002_02393	0.52	+0.4
2,669,430	+		MIT1002_02393	0.54	-0.5
2,669,438	-		MIT1002_02393	0.55	-0.5
2,669,445	-		MIT1002_02393	0.56	+1.2
2,669,445	-		MIT1002_02393	0.56	+0.6
2,669,454	+		MIT1002_02393	0.56	+1.0
2,669,567	+		MIT1002_02393	0.66	+0.5
2,669,575	-		MIT1002_02393	0.67	-0.1
2,669,577	-		MIT1002_02393	0.67	-0.1
2,669,641	+		MIT1002_02393	0.73	+1.8
2,669,641	+		MIT1002_02393	0.73	+1.1
2,669,641	+		MIT1002_02393	0.73	-0.2
2,669,651	+		MIT1002_02393	0.74	+0.1
2,669,651	+		MIT1002_02393	0.74	+0.4
2,669,651	+		MIT1002_02393	0.74	+0.1
2,669,651	+		MIT1002_02393	0.74	-0.6
2,669,651	+		MIT1002_02393	0.74	-0.1
2,669,651	+		MIT1002_02393	0.74	+2.5
2,669,651	+		MIT1002_02393	0.74	+0.5
2,669,651	+		MIT1002_02393	0.74	-0.3
2,669,651	+		MIT1002_02393	0.74	+0.9
2,669,651	+		MIT1002_02393	0.74	-1.8
2,669,651	+		MIT1002_02393	0.74	-0.5
2,669,659	-		MIT1002_02393	0.74	+0.2
2,669,659	-		MIT1002_02393	0.74	-0.2
2,669,659	-		MIT1002_02393	0.74	+1.4
2,669,659	-		MIT1002_02393	0.74	-1.6
2,669,659	-		MIT1002_02393	0.74	+1.3
2,669,659	-		MIT1002_02393	0.74	+0.9
2,669,659	-		MIT1002_02393	0.74	+0.9
2,669,659	-		MIT1002_02393	0.74	+0.6
2,669,659	-		MIT1002_02393	0.74	+0.2
2,669,659	-		MIT1002_02393	0.74	-1.8
2,669,677	-		MIT1002_02393	0.76	+2.2