Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01681

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
1,863,202	+		MIT1002_01680	0.66	+1.3
1,863,210	+		MIT1002_01680	0.67	+0.4
1,863,210	-		MIT1002_01680	0.67	+0.6
1,863,253	-		MIT1002_01680	0.69	-0.6
1,863,271	-		MIT1002_01680	0.69	+1.3
1,863,312	-		MIT1002_01680	0.71	-0.1
1,863,437	-		MIT1002_01680	0.76	+0.4
1,863,445	+		MIT1002_01680	0.77	+0.9
1,863,445	+		MIT1002_01680	0.77	-0.6
1,863,453	-		MIT1002_01680	0.77	+0.7
1,863,453	-		MIT1002_01680	0.77	+1.5
1,863,483	-		MIT1002_01680	0.78	-0.9
1,863,523	+		MIT1002_01680	0.80	-2.8
1,863,531	+		MIT1002_01680	0.81	+3.7
1,863,531	+		MIT1002_01680	0.81	+0.6
1,863,592	-		MIT1002_01680	0.83	+0.8
1,863,600	+		MIT1002_01680	0.83	-0.5
1,863,609	-		MIT1002_01680	0.84	-2.1
1,863,722	+		MIT1002_01680	0.89	-0.7
1,863,744	-		MIT1002_01680	0.90	+2.1
1,863,751	-				-0.4
1,863,753	+				-0.4
1,863,753	+				-1.3
1,863,757	+				+2.1
1,863,765	-				+0.4
1,863,823	+				-0.4
1,863,823	+				-0.0
1,863,831	-				-0.8
1,863,877	-				+0.8
1,863,877	-				-1.6
1,863,877	-				+1.6
1,863,877	-				-2.2
1,863,877	-				-1.3
1,863,877	-				+1.4
1,863,877	-				+1.1
1,863,905	+				-0.6
1,863,907	-				-0.0
1,863,957	+				-0.4
1,864,273	-				+0.7
1,864,300	+				+0.7
1,864,320	-				-1.3
1,864,340	-				-0.3
1,864,378	-				-0.1
1,864,393	-				-0.5
1,864,426	+		MIT1002_01681	0.11	+1.7
1,864,560	-		MIT1002_01681	0.16	-1.4
1,864,560	-		MIT1002_01681	0.16	-0.6
1,864,611	-		MIT1002_01681	0.18	-1.0
1,864,630	-		MIT1002_01681	0.19	-1.6
1,864,681	-		MIT1002_01681	0.20	+1.2
1,864,741	-		MIT1002_01681	0.23	+0.5
1,864,761	+		MIT1002_01681	0.23	-1.3
1,864,764	-		MIT1002_01681	0.24	+1.7
1,864,764	-		MIT1002_01681	0.24	-1.6
1,864,764	-		MIT1002_01681	0.24	+1.7
1,864,764	-		MIT1002_01681	0.24	+0.9
1,864,815	+		MIT1002_01681	0.25	+1.5
1,864,877	+		MIT1002_01681	0.28	-0.7
1,864,885	-		MIT1002_01681	0.28	+0.0
1,864,885	-		MIT1002_01681	0.28	-0.5
1,864,885	-		MIT1002_01681	0.28	-0.6
1,864,912	-		MIT1002_01681	0.29	+1.9
1,864,966	+		MIT1002_01681	0.31	-1.9
1,865,020	+		MIT1002_01681	0.33	+0.6
1,865,060	+		MIT1002_01681	0.34	+0.2
1,865,068	-		MIT1002_01681	0.35	-0.3
1,865,188	-		MIT1002_01681	0.39	-0.7
1,865,201	+		MIT1002_01681	0.40	-0.6
1,865,244	+		MIT1002_01681	0.41	-1.3
1,865,244	+		MIT1002_01681	0.41	-0.2
1,865,244	+		MIT1002_01681	0.41	-1.3
1,865,252	+		MIT1002_01681	0.42	-0.4
1,865,252	-		MIT1002_01681	0.42	-0.3
1,865,252	-		MIT1002_01681	0.42	-0.5
1,865,252	-		MIT1002_01681	0.42	+1.0
1,865,266	+		MIT1002_01681	0.42	-0.7
1,865,270	-		MIT1002_01681	0.42	+0.8
1,865,296	+		MIT1002_01681	0.43	+0.2
1,865,304	-		MIT1002_01681	0.43	+1.7
1,865,314	-		MIT1002_01681	0.44	+1.7
1,865,404	+		MIT1002_01681	0.47	+0.7
1,865,412	-		MIT1002_01681	0.47	-1.0
1,865,464	+		MIT1002_01681	0.49	-0.1
1,865,493	+		MIT1002_01681	0.50	-0.5
1,865,541	+		MIT1002_01681	0.52	-0.9
1,865,543	+		MIT1002_01681	0.52	+2.3
1,865,549	-		MIT1002_01681	0.53	+0.5
1,865,549	-		MIT1002_01681	0.53	+0.3
1,865,551	-		MIT1002_01681	0.53	+1.5
1,865,551	-		MIT1002_01681	0.53	-0.5
1,865,591	-		MIT1002_01681	0.54	-0.8
1,865,795	+		MIT1002_01681	0.62	-0.7
1,865,805	-		MIT1002_01681	0.62	+0.0
1,865,861	+		MIT1002_01681	0.64	+1.8
1,865,861	+		MIT1002_01681	0.64	+1.4
1,865,861	+		MIT1002_01681	0.64	+0.9
1,865,861	+		MIT1002_01681	0.64	+0.1
1,865,861	+		MIT1002_01681	0.64	-0.8
1,865,861	+		MIT1002_01681	0.64	-0.1
1,865,869	-		MIT1002_01681	0.64	+0.2
1,865,869	-		MIT1002_01681	0.64	-0.2
1,865,869	-		MIT1002_01681	0.64	-0.4
1,865,869	-		MIT1002_01681	0.64	+0.5
1,865,869	-		MIT1002_01681	0.64	-1.8
1,865,962	-		MIT1002_01681	0.68	-0.1
1,865,980	+		MIT1002_01681	0.68	+1.0
1,865,985	+		MIT1002_01681	0.69	+3.1
1,865,993	-		MIT1002_01681	0.69	-1.2
1,866,024	-		MIT1002_01681	0.70	-2.2
1,866,061	-		MIT1002_01681	0.71	+0.1
1,866,078	+		MIT1002_01681	0.72	-1.1
1,866,085	-		MIT1002_01681	0.72	+0.8
1,866,153	-		MIT1002_01681	0.75	+1.0
1,866,169	+		MIT1002_01681	0.75	-0.3
1,866,177	-		MIT1002_01681	0.76	-1.9
1,866,177	-		MIT1002_01681	0.76	-2.7
1,866,177	-		MIT1002_01681	0.76	-0.8
1,866,187	+		MIT1002_01681	0.76	-0.1
1,866,187	+		MIT1002_01681	0.76	-0.8
1,866,202	+		MIT1002_01681	0.77	+0.6
1,866,210	-		MIT1002_01681	0.77	+1.4
1,866,211	+		MIT1002_01681	0.77	+0.1
1,866,218	+		MIT1002_01681	0.77	+1.1
1,866,226	-		MIT1002_01681	0.78	-1.6
1,866,315	+		MIT1002_01681	0.81	-0.3
1,866,322	-		MIT1002_01681	0.81	+2.2
1,866,342	+		MIT1002_01681	0.82	-2.9
1,866,447	+		MIT1002_01681	0.86	+1.1
1,866,520	-		MIT1002_01681	0.88	-1.6
1,866,520	-		MIT1002_01681	0.88	-1.5
1,866,520	-		MIT1002_01681	0.88	-1.8
1,866,522	-		MIT1002_01681	0.89	+0.9
1,866,564	+				+2.3
1,866,600	+				-0.7
1,866,616	-				-0.4
1,866,646	-				-1.3
1,866,661	+				+0.4
1,866,690	+				-0.2
1,866,698	-				-0.5
1,866,709	+				+0.7
1,866,714	-				-2.1
1,866,714	-				-1.1
1,866,716	+				+0.2
1,866,716	+				+1.5
1,866,767	-				+2.6
1,866,863	-				-1.0
1,866,890	+				-0.8
1,867,046	+				-0.1
1,867,208	-				-0.3
1,867,215	-				-1.9
1,867,215	-				+0.8
1,867,242	+				-1.2
1,867,354	-		MIT1002_01682	0.19	-0.6
1,867,445	-		MIT1002_01682	0.29	-0.6
1,867,483	-		MIT1002_01682	0.33	-0.7
1,867,505	+		MIT1002_01682	0.35	+0.5
1,867,539	+		MIT1002_01682	0.39	-1.5
1,867,539	+		MIT1002_01682	0.39	-0.9
1,867,539	+		MIT1002_01682	0.39	-1.5
1,867,552	+		MIT1002_01682	0.40	+1.2
1,867,595	+		MIT1002_01682	0.45	-1.1
1,867,629	+		MIT1002_01682	0.48	+1.3
1,867,636	+		MIT1002_01682	0.49	+1.2
1,867,807	+		MIT1002_01682	0.67	+0.7
1,867,819	+		MIT1002_01682	0.68	-0.3
1,867,826	+		MIT1002_01682	0.69	-1.8