Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01604

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01603 and MIT1002_01604 are separated by 216 nucleotidesMIT1002_01604 and MIT1002_01605 are separated by 118 nucleotidesMIT1002_01605 and MIT1002_01606 are separated by 18 nucleotidesMIT1002_01606 and MIT1002_01607 are separated by 290 nucleotides MIT1002_01603: MIT1002_01603 - Threonine--tRNA ligase, at 1,766,487 to 1,768,403 _01603 MIT1002_01604: MIT1002_01604 - Translation initiation factor IF-3, at 1,768,620 to 1,769,054 _01604 MIT1002_01605: MIT1002_01605 - Ribosomal protein A, at 1,769,173 to 1,769,370 _01605 MIT1002_01606: MIT1002_01606 - 50S ribosomal protein L20, at 1,769,389 to 1,769,745 _01606 MIT1002_01607: MIT1002_01607 - Mannose-1-phosphate guanylyltransferase 1, at 1,770,036 to 1,770,314 _01607 Position (kb) 1768 1769 1770Strain fitness (log2 ratio) -1 0 1at 1769.851 kb on + strandat 1769.859 kb on - strandat 1769.861 kb on + strandat 1769.869 kb on - strandat 1769.947 kb on + strandat 1770.018 kb on + strandat 1770.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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1,769,851 + -1.2
1,769,859 - -0.5
1,769,861 + -0.8
1,769,869 - -0.6
1,769,947 + +0.3
1,770,018 + -1.3
1,770,018 + +1.1

Or see this region's nucleotide sequence