Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01579

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
1,736,294	+		MIT1002_01577	0.71	-0.6
1,736,294	+		MIT1002_01577	0.71	-0.3
1,736,294	+		MIT1002_01577	0.71	-1.4
1,736,294	+		MIT1002_01577	0.71	-2.1
1,736,300	+		MIT1002_01577	0.72	+0.5
1,736,300	+		MIT1002_01577	0.72	-2.2
1,736,302	-		MIT1002_01577	0.72	-1.3
1,736,302	-		MIT1002_01577	0.72	-1.2
1,736,302	-		MIT1002_01577	0.72	+1.6
1,736,308	-		MIT1002_01577	0.72	-0.5
1,736,460	+		MIT1002_01577	0.89	-1.2
1,736,525	-				-1.0
1,736,557	+				-0.4
1,736,595	+				+0.0
1,736,702	+				-0.4
1,736,702	+				-1.3
1,736,702	+				-1.7
1,736,710	-				-0.4
1,736,840	+				-1.4
1,736,840	+				+0.7
1,736,840	+				-1.0
1,736,842	+				+1.0
1,736,862	+				+2.3
1,736,864	+				-0.3
1,736,872	-				-0.3
1,736,872	-				+0.3
1,736,886	+				-0.0
1,736,886	+				+2.6
1,736,892	-				+0.3
1,736,894	-				+2.7
1,736,894	-				-1.6
1,736,894	-				-1.7
1,736,929	-				+1.9
1,736,956	+				-0.9
1,736,986	+				+1.1
1,737,053	-		MIT1002_01578	0.30	-0.9
1,737,077	+		MIT1002_01578	0.44	-0.9
1,737,087	-		MIT1002_01578	0.50	-0.6
1,737,197	-				-1.9
1,737,322	+				-0.0
1,737,345	-				+1.1
1,737,367	+				+0.3
1,737,405	-				-0.0
1,737,405	-				-0.4
1,737,409	+				+1.3
1,737,450	-		MIT1002_01579	0.13	-0.3
1,737,453	+		MIT1002_01579	0.13	+2.0
1,737,474	-		MIT1002_01579	0.15	-1.4
1,737,550	-		MIT1002_01579	0.20	-0.3
1,737,676	-		MIT1002_01579	0.30	+0.5
1,737,699	-		MIT1002_01579	0.32	+1.3
1,737,757	+		MIT1002_01579	0.36	+0.2
1,737,889	-		MIT1002_01579	0.46	+1.1
1,737,895	+		MIT1002_01579	0.46	-1.8
1,737,993	-		MIT1002_01579	0.54	-0.9
1,738,000	+		MIT1002_01579	0.54	-0.2
1,738,010	+		MIT1002_01579	0.55	+0.1
1,738,010	+		MIT1002_01579	0.55	+1.1
1,738,010	+		MIT1002_01579	0.55	-0.2
1,738,010	+		MIT1002_01579	0.55	-0.7
1,738,010	+		MIT1002_01579	0.55	+1.1
1,738,018	-		MIT1002_01579	0.56	-0.1
1,738,018	-		MIT1002_01579	0.56	+1.4
1,738,079	+		MIT1002_01579	0.60	+1.4
1,738,087	-		MIT1002_01579	0.61	-0.3
1,738,087	-		MIT1002_01579	0.61	-1.3
1,738,111	+		MIT1002_01579	0.63	-0.1
1,738,111	+		MIT1002_01579	0.63	-2.2
1,738,111	+		MIT1002_01579	0.63	-0.2
1,738,119	-		MIT1002_01579	0.63	+1.4
1,738,172	+		MIT1002_01579	0.67	-1.0
1,738,172	+		MIT1002_01579	0.67	-0.4
1,738,190	-		MIT1002_01579	0.68	+0.1
1,738,190	-		MIT1002_01579	0.68	-0.6
1,738,190	-		MIT1002_01579	0.68	+1.1
1,738,215	+		MIT1002_01579	0.70	+1.0
1,738,285	+		MIT1002_01579	0.76	-2.0
1,738,413	-		MIT1002_01579	0.85	+1.1
1,738,413	-		MIT1002_01579	0.85	-1.2
1,738,445	+		MIT1002_01579	0.88	+0.1
1,738,462	-		MIT1002_01579	0.89	-0.4
1,738,503	+				-0.1
1,738,511	-				+1.7
1,738,516	-				-0.8
1,738,523	-				-2.1
1,738,555	+				-0.5
1,738,563	-				+0.1
1,738,610	+				-0.3
1,738,869	-				-0.9
1,738,914	-				-1.3
1,738,975	-				-0.5
1,739,038	+		MIT1002_01580	0.11	+0.7
1,739,038	+		MIT1002_01580	0.11	-0.1
1,739,038	+		MIT1002_01580	0.11	+0.4
1,739,046	-		MIT1002_01580	0.11	+1.4
1,739,046	-		MIT1002_01580	0.11	-0.1
1,739,046	-		MIT1002_01580	0.11	+0.3
1,739,059	+		MIT1002_01580	0.13	-0.5
1,739,059	+		MIT1002_01580	0.13	-0.9
1,739,079	+		MIT1002_01580	0.15	-2.2
1,739,117	+		MIT1002_01580	0.19	+0.4
1,739,198	+		MIT1002_01580	0.27	-0.8
1,739,237	+		MIT1002_01580	0.31	-1.4
1,739,239	+		MIT1002_01580	0.31	-1.4
1,739,239	+		MIT1002_01580	0.31	-0.6
1,739,239	+		MIT1002_01580	0.31	-1.8
1,739,239	+		MIT1002_01580	0.31	-0.0
1,739,239	+		MIT1002_01580	0.31	-0.9
1,739,239	+		MIT1002_01580	0.31	-1.1
1,739,239	+		MIT1002_01580	0.31	-3.2
1,739,239	+		MIT1002_01580	0.31	-2.0
1,739,245	-		MIT1002_01580	0.31	-0.7
1,739,247	-		MIT1002_01580	0.32	+0.7
1,739,247	-		MIT1002_01580	0.32	-1.9
1,739,247	-		MIT1002_01580	0.32	-1.4
1,739,247	-		MIT1002_01580	0.32	-0.5
1,739,247	-		MIT1002_01580	0.32	-0.9
1,739,359	+		MIT1002_01580	0.43	-0.9
1,739,384	+		MIT1002_01580	0.45	-2.5
1,739,399	+		MIT1002_01580	0.47	-1.7
1,739,399	+		MIT1002_01580	0.47	-0.3
1,739,414	+		MIT1002_01580	0.48	-0.7
1,739,427	+		MIT1002_01580	0.50	+0.2
1,739,427	+		MIT1002_01580	0.50	-0.9
1,739,427	+		MIT1002_01580	0.50	-2.1
1,739,427	+		MIT1002_01580	0.50	+0.7
1,739,435	-		MIT1002_01580	0.50	+0.1
1,739,435	-		MIT1002_01580	0.50	+1.4
1,739,435	-		MIT1002_01580	0.50	-1.5
1,739,435	-		MIT1002_01580	0.50	+0.1
1,739,437	+		MIT1002_01580	0.51	-0.7
1,739,437	+		MIT1002_01580	0.51	-1.9
1,739,437	+		MIT1002_01580	0.51	+1.0
1,739,519	+		MIT1002_01580	0.59	-1.6