Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01285

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
1,417,980	+				+0.3
1,418,035	-				+0.9
1,418,035	-				-1.6
1,418,046	+				-0.4
1,418,106	-		MIT1002_01284	0.12	-1.3
1,418,113	+		MIT1002_01284	0.12	+1.2
1,418,113	+		MIT1002_01284	0.12	+0.0
1,418,113	+		MIT1002_01284	0.12	+1.5
1,418,113	+		MIT1002_01284	0.12	-0.1
1,418,113	+		MIT1002_01284	0.12	-1.4
1,418,113	+		MIT1002_01284	0.12	-1.1
1,418,113	+		MIT1002_01284	0.12	-0.2
1,418,113	+		MIT1002_01284	0.12	-0.7
1,418,113	+		MIT1002_01284	0.12	-1.1
1,418,113	+		MIT1002_01284	0.12	+0.5
1,418,121	-		MIT1002_01284	0.13	-0.5
1,418,121	-		MIT1002_01284	0.13	+0.2
1,418,121	-		MIT1002_01284	0.13	-0.1
1,418,121	-		MIT1002_01284	0.13	+0.2
1,418,121	-		MIT1002_01284	0.13	+0.4
1,418,121	-		MIT1002_01284	0.13	-0.8
1,418,207	-		MIT1002_01284	0.22	+1.5
1,418,282	+		MIT1002_01284	0.30	+0.0
1,418,286	-		MIT1002_01284	0.30	+1.5
1,418,286	-		MIT1002_01284	0.30	-2.0
1,418,318	+		MIT1002_01284	0.33	+0.3
1,418,342	+		MIT1002_01284	0.36	-0.5
1,418,463	+		MIT1002_01284	0.48	-1.2
1,418,550	+		MIT1002_01284	0.57	-1.3
1,418,784	+		MIT1002_01284	0.81	-0.5
1,418,804	+		MIT1002_01284	0.83	+1.2
1,418,864	+		MIT1002_01284	0.89	+1.0
1,418,864	+		MIT1002_01284	0.89	-0.7
1,418,882	-				-0.1
1,418,906	+				-1.2
1,418,922	+				-2.7
1,418,968	+				+1.6
1,418,969	+				-0.9
1,418,969	+				-0.9
1,418,969	+				-2.1
1,418,977	-				+1.5
1,418,977	-				+0.9
1,418,977	-				-0.5
1,418,977	-				+0.5
1,418,977	-				+1.2
1,419,081	-		MIT1002_01285	0.11	+2.6
1,419,094	-		MIT1002_01285	0.13	-0.3
1,419,131	+		MIT1002_01285	0.17	-0.8
1,419,158	-		MIT1002_01285	0.20	-1.9
1,419,196	-		MIT1002_01285	0.24	-1.6
1,419,261	+		MIT1002_01285	0.30	+0.9
1,419,269	-		MIT1002_01285	0.31	-0.1
1,419,270	-		MIT1002_01285	0.31	-0.6
1,419,314	-		MIT1002_01285	0.36	+0.5
1,419,324	+		MIT1002_01285	0.37	-1.3
1,419,359	-		MIT1002_01285	0.41	+0.9
1,419,370	-		MIT1002_01285	0.42	-1.4
1,419,396	-		MIT1002_01285	0.44	-1.0
1,419,442	+		MIT1002_01285	0.49	+0.1
1,419,460	-		MIT1002_01285	0.51	-0.6
1,419,464	+		MIT1002_01285	0.52	-1.4
1,419,489	+		MIT1002_01285	0.54	-1.2
1,419,535	-		MIT1002_01285	0.59	+1.2
1,419,577	-		MIT1002_01285	0.63	+0.6
1,419,623	+		MIT1002_01285	0.68	+1.7
1,419,682	+		MIT1002_01285	0.74	+1.8
1,419,682	+		MIT1002_01285	0.74	-0.0
1,419,682	+		MIT1002_01285	0.74	-1.0
1,419,682	+		MIT1002_01285	0.74	+0.9
1,419,682	+		MIT1002_01285	0.74	+0.3
1,419,682	+		MIT1002_01285	0.74	-0.1
1,419,682	+		MIT1002_01285	0.74	-1.4
1,419,690	-		MIT1002_01285	0.75	-2.7
1,419,690	-		MIT1002_01285	0.75	-0.7
1,419,690	-		MIT1002_01285	0.75	-0.6
1,419,690	-		MIT1002_01285	0.75	+1.0
1,419,690	-		MIT1002_01285	0.75	-5.2
1,419,692	+		MIT1002_01285	0.75	-0.8
1,419,717	+		MIT1002_01285	0.78	+0.9
1,419,718	-		MIT1002_01285	0.78	-2.1
1,419,803	-		MIT1002_01285	0.87	+1.0
1,419,807	-		MIT1002_01285	0.87	+0.3
1,419,829	+		MIT1002_01285	0.90	-1.0
1,419,896	-				-2.3
1,420,047	+				+0.9
1,420,047	+				+1.4
1,420,047	+				-0.1
1,420,047	+				-0.2
1,420,047	+				-0.1
1,420,055	-				-0.7
1,420,055	-				-0.9
1,420,055	-				-0.1
1,420,071	+				-0.1
1,420,103	-				+1.1
1,420,183	+				-1.1
1,420,210	+				-2.1
1,420,210	+				-0.2
1,420,226	+				-0.2
1,420,234	-				-0.5
1,420,238	+				+0.4
1,420,417	-				-0.5
1,420,426	-				-0.5
1,420,457	+				+0.7
1,420,459	+				+2.8
1,420,533	-		MIT1002_01286	0.13	+1.4
1,420,638	-		MIT1002_01286	0.21	-0.3
1,420,698	+		MIT1002_01286	0.26	+1.8
1,420,716	-		MIT1002_01286	0.27	-0.7
1,420,890	+		MIT1002_01286	0.41	+0.2
1,420,890	+		MIT1002_01286	0.41	+0.7
1,420,890	-		MIT1002_01286	0.41	-1.3
1,420,890	-		MIT1002_01286	0.41	+0.1