Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01210

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
1,332,283	+				-0.4
1,332,328	+				-0.1
1,332,336	-				+0.5
1,332,336	-				+1.0
1,332,336	-				-0.9
1,332,375	-		MIT1002_01209	0.12	+0.5
1,332,390	+		MIT1002_01209	0.14	+1.1
1,332,390	+		MIT1002_01209	0.14	+0.1
1,332,398	-		MIT1002_01209	0.15	-0.1
1,332,398	-		MIT1002_01209	0.15	+0.2
1,332,398	-		MIT1002_01209	0.15	-0.3
1,332,398	-		MIT1002_01209	0.15	+1.1
1,332,398	-		MIT1002_01209	0.15	+0.4
1,332,445	+		MIT1002_01209	0.20	+1.1
1,332,473	-		MIT1002_01209	0.23	-1.0
1,332,492	+		MIT1002_01209	0.26	-0.5
1,332,518	-		MIT1002_01209	0.29	-0.5
1,332,518	-		MIT1002_01209	0.29	+0.8
1,332,520	+		MIT1002_01209	0.29	-1.4
1,332,563	-		MIT1002_01209	0.34	-0.4
1,332,563	-		MIT1002_01209	0.34	-0.6
1,332,569	+		MIT1002_01209	0.35	-0.3
1,332,569	+		MIT1002_01209	0.35	-0.3
1,332,569	+		MIT1002_01209	0.35	-0.8
1,332,569	+		MIT1002_01209	0.35	-0.5
1,332,591	-		MIT1002_01209	0.37	-0.8
1,332,602	+		MIT1002_01209	0.38	+0.3
1,332,602	+		MIT1002_01209	0.38	-0.0
1,332,610	-		MIT1002_01209	0.39	+0.0
1,332,750	+		MIT1002_01209	0.56	-2.0
1,332,750	+		MIT1002_01209	0.56	+0.1
1,332,772	-		MIT1002_01209	0.58	-1.4
1,332,853	+		MIT1002_01209	0.68	-1.8
1,332,861	-		MIT1002_01209	0.69	-0.2
1,332,877	-		MIT1002_01209	0.71	-3.1
1,332,899	-		MIT1002_01209	0.73	-0.6
1,332,944	-		MIT1002_01209	0.78	-0.5
1,332,967	+		MIT1002_01209	0.81	-0.2
1,332,967	+		MIT1002_01209	0.81	-1.2
1,332,967	+		MIT1002_01209	0.81	-1.2
1,332,975	-		MIT1002_01209	0.82	-0.5
1,332,982	+		MIT1002_01209	0.83	-0.7
1,332,990	-		MIT1002_01209	0.84	-0.3
1,332,990	-		MIT1002_01209	0.84	-0.5
1,333,094	-				+1.4
1,333,094	-				-1.5
1,333,094	-				+1.4
1,333,106	-				+0.1
1,333,106	-				+0.5
1,333,268	+				-1.1
1,333,268	+				-0.9
1,333,276	-				+0.9
1,333,276	-				+1.1
1,333,335	-		MIT1002_01210	0.14	-0.9
1,333,337	+		MIT1002_01210	0.15	+0.4
1,333,345	+		MIT1002_01210	0.16	+0.9
1,333,350	-		MIT1002_01210	0.18	+0.1
1,333,369	-		MIT1002_01210	0.22	+0.9
1,333,418	-		MIT1002_01210	0.33	-0.5
1,333,463	+		MIT1002_01210	0.43	-0.6
1,333,471	-		MIT1002_01210	0.45	+1.4
1,333,499	+		MIT1002_01210	0.52	+0.1
1,333,522	+		MIT1002_01210	0.57	-0.1
1,333,537	+		MIT1002_01210	0.60	-0.6
1,333,543	+		MIT1002_01210	0.62	-0.5
1,333,545	-		MIT1002_01210	0.62	+1.5
1,333,545	-		MIT1002_01210	0.62	-0.4
1,333,595	+		MIT1002_01210	0.74	-1.2
1,333,639	+		MIT1002_01210	0.84	+1.0
1,333,639	+		MIT1002_01210	0.84	-0.3
1,333,639	+		MIT1002_01210	0.84	+0.9
1,333,639	+		MIT1002_01210	0.84	-0.9
1,333,639	+		MIT1002_01210	0.84	-1.8
1,333,647	-		MIT1002_01210	0.85	-0.1
1,333,647	-		MIT1002_01210	0.85	+1.3
1,333,647	-		MIT1002_01210	0.85	-0.0
1,333,647	-		MIT1002_01210	0.85	+0.2
1,333,677	+				-1.0
1,333,735	-				-0.9
1,333,735	-				+0.2
1,333,820	+		MIT1002_01211	0.11	+0.2
1,333,904	-		MIT1002_01211	0.19	-2.9
1,333,904	-		MIT1002_01211	0.19	+2.6
1,333,921	-		MIT1002_01211	0.20	-1.8
1,333,929	-		MIT1002_01211	0.21	+1.2
1,334,022	-		MIT1002_01211	0.29	-0.1
1,334,125	+		MIT1002_01211	0.38	+0.5
1,334,127	+		MIT1002_01211	0.38	-1.2
1,334,161	+		MIT1002_01211	0.41	+1.2
1,334,242	-		MIT1002_01211	0.48	+0.3
1,334,356	-		MIT1002_01211	0.58	+1.2
1,334,381	-		MIT1002_01211	0.60	-0.3
1,334,446	-		MIT1002_01211	0.66	-0.5
1,334,506	-		MIT1002_01211	0.71	+0.2
1,334,516	-		MIT1002_01211	0.72	-1.1
1,334,538	+		MIT1002_01211	0.74	+0.9
1,334,559	+		MIT1002_01211	0.75	-1.0
1,334,559	+		MIT1002_01211	0.75	-0.5
1,334,571	+		MIT1002_01211	0.76	+1.5
1,334,632	+		MIT1002_01211	0.82	-1.8