Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01139

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01137 and MIT1002_01138 overlap by 1 nucleotidesMIT1002_01138 and MIT1002_01139 are separated by 1 nucleotidesMIT1002_01139 and MIT1002_01140 are separated by 73 nucleotides MIT1002_01137: MIT1002_01137 - putative D,D-dipeptide transport ATP-binding protein DdpF, at 1,249,216 to 1,250,022 _01137 MIT1002_01138: MIT1002_01138 - putative D,D-dipeptide transport ATP-binding protein DdpD, at 1,250,022 to 1,251,017 _01138 MIT1002_01139: MIT1002_01139 - Peptide transport system permease protein SapC, at 1,251,019 to 1,251,825 _01139 MIT1002_01140: MIT1002_01140 - Dipeptide transport system permease protein DppB, at 1,251,899 to 1,252,867 _01140 Position (kb) 1251 1252Strain fitness (log2 ratio) -1 0 1at 1250.035 kb on - strandat 1251.026 kb on - strandat 1251.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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1,250,035 - +0.6
1,251,026 - -0.3
1,251,981 - -1.7

Or see this region's nucleotide sequence