Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00833 and MIT1002_00834 are separated by 848 nucleotides MIT1002_00834 and MIT1002_00835 overlap by 4 nucleotides MIT1002_00835 and MIT1002_00836 are separated by 9 nucleotides
MIT1002_00833: MIT1002_00833 - Inner membrane protein YrbG, at 914,678 to 915,634
_00833
MIT1002_00834: MIT1002_00834 - putative ABC transporter ATP-binding protein, at 916,483 to 917,283
_00834
MIT1002_00835: MIT1002_00835 - putative phospholipid ABC transporter permease protein MlaE, at 917,280 to 918,056
_00835
MIT1002_00836: MIT1002_00836 - putative phospholipid ABC transporter-binding protein MlaD, at 918,066 to 918,539
_00836
Position (kb) 916
917
918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 915.769 kb on + strand at 915.775 kb on - strand at 915.845 kb on + strand at 915.845 kb on + strand at 916.251 kb on + strand at 916.251 kb on + strand at 916.251 kb on + strand at 916.251 kb on + strand at 916.251 kb on + strand at 916.259 kb on - strand at 916.259 kb on - strand at 916.259 kb on - strand at 916.259 kb on - strand at 916.259 kb on - strand at 916.355 kb on - strand at 916.358 kb on + strand at 916.388 kb on + strand at 916.444 kb on + strand at 916.481 kb on + strand at 916.710 kb on + strand, within MIT1002_00834 at 916.862 kb on + strand, within MIT1002_00834 at 916.925 kb on + strand, within MIT1002_00834 at 917.027 kb on - strand, within MIT1002_00834 at 917.071 kb on - strand, within MIT1002_00834 at 917.097 kb on + strand, within MIT1002_00834 at 917.182 kb on + strand, within MIT1002_00834 at 917.227 kb on - strand at 917.351 kb on - strand at 917.411 kb on + strand, within MIT1002_00835 at 917.490 kb on + strand, within MIT1002_00835 at 917.535 kb on - strand, within MIT1002_00835 at 917.662 kb on - strand, within MIT1002_00835 at 917.743 kb on - strand, within MIT1002_00835 at 917.779 kb on + strand, within MIT1002_00835 at 917.861 kb on + strand, within MIT1002_00835 at 917.873 kb on - strand, within MIT1002_00835 at 917.873 kb on - strand, within MIT1002_00835 at 917.958 kb on + strand, within MIT1002_00835 at 918.006 kb on + strand at 918.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 915,769 + -2.4 915,775 - -0.3 915,845 + -0.0 915,845 + -2.3 916,251 + +0.7 916,251 + +0.8 916,251 + -1.5 916,251 + +0.7 916,251 + +0.1 916,259 - -0.6 916,259 - -1.2 916,259 - +0.2 916,259 - +0.8 916,259 - +2.5 916,355 - +0.4 916,358 + -0.3 916,388 + +0.4 916,444 + -2.3 916,481 + +1.4 916,710 + MIT1002_00834 0.28 +1.6 916,862 + MIT1002_00834 0.47 -0.1 916,925 + MIT1002_00834 0.55 -0.1 917,027 - MIT1002_00834 0.68 +1.3 917,071 - MIT1002_00834 0.73 -1.3 917,097 + MIT1002_00834 0.77 -1.4 917,182 + MIT1002_00834 0.87 -0.3 917,227 - -0.7 917,351 - -0.7 917,411 + MIT1002_00835 0.17 -1.4 917,490 + MIT1002_00835 0.27 -0.0 917,535 - MIT1002_00835 0.33 -1.1 917,662 - MIT1002_00835 0.49 -0.5 917,743 - MIT1002_00835 0.60 -3.5 917,779 + MIT1002_00835 0.64 -0.5 917,861 + MIT1002_00835 0.75 -0.5 917,873 - MIT1002_00835 0.76 -0.2 917,873 - MIT1002_00835 0.76 +1.5 917,958 + MIT1002_00835 0.87 +2.0 918,006 + -2.0 918,058 + +1.6
Or see this region's nucleotide sequence