Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00800

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00798 and MIT1002_00799 are separated by 15 nucleotidesMIT1002_00799 and MIT1002_00800 are separated by 65 nucleotidesMIT1002_00800 and MIT1002_00801 are separated by 3 nucleotides MIT1002_00798: MIT1002_00798 - hypothetical protein, at 885,226 to 885,927 _00798 MIT1002_00799: MIT1002_00799 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 885,943 to 886,788 _00799 MIT1002_00800: MIT1002_00800 - Heme oxygenase, at 886,854 to 887,525 _00800 MIT1002_00801: MIT1002_00801 - Long-chain-fatty-acid--CoA ligase FadD15, at 887,529 to 889,037 _00801 Position (kb) 886 887 888Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 885.854 kb on + strand, within MIT1002_00798at 885.854 kb on + strand, within MIT1002_00798at 885.861 kb on - strandat 885.869 kb on + strandat 885.934 kb on - strandat 885.949 kb on - strandat 886.060 kb on + strand, within MIT1002_00799at 886.060 kb on + strand, within MIT1002_00799at 886.068 kb on - strand, within MIT1002_00799at 886.068 kb on - strand, within MIT1002_00799at 886.109 kb on + strand, within MIT1002_00799at 886.117 kb on - strand, within MIT1002_00799at 886.203 kb on - strand, within MIT1002_00799at 886.265 kb on - strand, within MIT1002_00799at 886.362 kb on - strand, within MIT1002_00799at 886.375 kb on + strand, within MIT1002_00799at 886.383 kb on - strand, within MIT1002_00799at 886.402 kb on - strand, within MIT1002_00799at 886.421 kb on - strand, within MIT1002_00799at 886.421 kb on - strand, within MIT1002_00799at 886.421 kb on - strand, within MIT1002_00799at 886.519 kb on + strand, within MIT1002_00799at 886.561 kb on - strand, within MIT1002_00799at 886.563 kb on + strand, within MIT1002_00799at 886.622 kb on + strand, within MIT1002_00799at 886.632 kb on + strand, within MIT1002_00799at 886.725 kb on - strandat 886.758 kb on + strandat 886.776 kb on + strandat 886.853 kb on - strandat 886.865 kb on + strandat 886.883 kb on + strandat 886.883 kb on - strandat 886.906 kb on + strandat 886.906 kb on - strandat 887.010 kb on + strand, within MIT1002_00800at 887.018 kb on - strand, within MIT1002_00800at 887.020 kb on + strand, within MIT1002_00800at 887.055 kb on - strand, within MIT1002_00800at 887.099 kb on + strand, within MIT1002_00800at 887.107 kb on - strand, within MIT1002_00800at 887.121 kb on + strand, within MIT1002_00800at 887.194 kb on - strand, within MIT1002_00800at 887.358 kb on - strand, within MIT1002_00800at 887.402 kb on + strand, within MIT1002_00800at 887.453 kb on + strand, within MIT1002_00800at 887.480 kb on - strandat 887.489 kb on + strandat 887.499 kb on + strandat 887.507 kb on - strandat 887.507 kb on - strandat 887.578 kb on + strandat 887.580 kb on + strandat 887.586 kb on - strandat 887.588 kb on - strandat 887.612 kb on + strandat 887.613 kb on + strandat 887.621 kb on - strandat 887.621 kb on - strandat 887.676 kb on + strandat 887.737 kb on + strand, within MIT1002_00801at 887.756 kb on + strand, within MIT1002_00801at 887.803 kb on + strand, within MIT1002_00801at 887.819 kb on - strand, within MIT1002_00801at 887.821 kb on + strand, within MIT1002_00801at 887.821 kb on - strand, within MIT1002_00801at 887.821 kb on - strand, within MIT1002_00801at 887.824 kb on - strand, within MIT1002_00801at 887.864 kb on + strand, within MIT1002_00801at 887.869 kb on + strand, within MIT1002_00801at 887.872 kb on - strand, within MIT1002_00801at 887.892 kb on - strand, within MIT1002_00801at 887.897 kb on - strand, within MIT1002_00801at 887.935 kb on - strand, within MIT1002_00801at 887.954 kb on + strand, within MIT1002_00801at 887.959 kb on + strand, within MIT1002_00801at 887.992 kb on + strand, within MIT1002_00801at 888.000 kb on - strand, within MIT1002_00801at 888.008 kb on + strand, within MIT1002_00801at 888.141 kb on + strand, within MIT1002_00801at 888.163 kb on + strand, within MIT1002_00801at 888.174 kb on + strand, within MIT1002_00801at 888.174 kb on + strand, within MIT1002_00801at 888.182 kb on - strand, within MIT1002_00801at 888.191 kb on - strand, within MIT1002_00801at 888.261 kb on - strand, within MIT1002_00801at 888.266 kb on - strand, within MIT1002_00801at 888.275 kb on + strand, within MIT1002_00801at 888.447 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.455 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.467 kb on - strand, within MIT1002_00801at 888.487 kb on + strand, within MIT1002_00801at 888.500 kb on + strand, within MIT1002_00801

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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885,854 + MIT1002_00798 0.89 +2.7
885,854 + MIT1002_00798 0.89 +0.2
885,861 - -0.5
885,869 + -0.6
885,934 - +1.2
885,949 - +0.6
886,060 + MIT1002_00799 0.14 -0.5
886,060 + MIT1002_00799 0.14 -0.4
886,068 - MIT1002_00799 0.15 +2.2
886,068 - MIT1002_00799 0.15 +1.3
886,109 + MIT1002_00799 0.20 -0.6
886,117 - MIT1002_00799 0.21 +0.6
886,203 - MIT1002_00799 0.31 -1.0
886,265 - MIT1002_00799 0.38 +1.6
886,362 - MIT1002_00799 0.50 -1.2
886,375 + MIT1002_00799 0.51 +1.2
886,383 - MIT1002_00799 0.52 +0.4
886,402 - MIT1002_00799 0.54 +1.2
886,421 - MIT1002_00799 0.57 -0.0
886,421 - MIT1002_00799 0.57 -0.0
886,421 - MIT1002_00799 0.57 +0.3
886,519 + MIT1002_00799 0.68 -0.1
886,561 - MIT1002_00799 0.73 -0.6
886,563 + MIT1002_00799 0.73 +0.4
886,622 + MIT1002_00799 0.80 -1.0
886,632 + MIT1002_00799 0.81 -1.3
886,725 - -0.3
886,758 + +1.3
886,776 + -1.0
886,853 - -2.5
886,865 + -0.2
886,883 + +0.3
886,883 - -0.3
886,906 + +0.2
886,906 - -0.6
887,010 + MIT1002_00800 0.23 +0.0
887,018 - MIT1002_00800 0.24 +0.6
887,020 + MIT1002_00800 0.25 -1.4
887,055 - MIT1002_00800 0.30 +0.4
887,099 + MIT1002_00800 0.36 -2.3
887,107 - MIT1002_00800 0.38 -0.0
887,121 + MIT1002_00800 0.40 +0.5
887,194 - MIT1002_00800 0.51 +1.9
887,358 - MIT1002_00800 0.75 -0.4
887,402 + MIT1002_00800 0.82 +1.0
887,453 + MIT1002_00800 0.89 +1.6
887,480 - +0.3
887,489 + -0.4
887,499 + +2.6
887,507 - -0.1
887,507 - +2.3
887,578 + -1.0
887,580 + -0.0
887,586 - -1.0
887,588 - +0.2
887,612 + +0.6
887,613 + +0.1
887,621 - +0.5
887,621 - +2.2
887,676 + -1.1
887,737 + MIT1002_00801 0.14 -1.9
887,756 + MIT1002_00801 0.15 -2.1
887,803 + MIT1002_00801 0.18 -2.8
887,819 - MIT1002_00801 0.19 +1.1
887,821 + MIT1002_00801 0.19 +0.6
887,821 - MIT1002_00801 0.19 +0.6
887,821 - MIT1002_00801 0.19 +0.5
887,824 - MIT1002_00801 0.20 +1.9
887,864 + MIT1002_00801 0.22 -0.3
887,869 + MIT1002_00801 0.23 -1.0
887,872 - MIT1002_00801 0.23 +0.6
887,892 - MIT1002_00801 0.24 +0.7
887,897 - MIT1002_00801 0.24 +0.1
887,935 - MIT1002_00801 0.27 -1.0
887,954 + MIT1002_00801 0.28 +0.3
887,959 + MIT1002_00801 0.28 -0.4
887,992 + MIT1002_00801 0.31 -0.9
888,000 - MIT1002_00801 0.31 +0.2
888,008 + MIT1002_00801 0.32 +0.6
888,141 + MIT1002_00801 0.41 -1.4
888,163 + MIT1002_00801 0.42 +1.3
888,174 + MIT1002_00801 0.43 +2.6
888,174 + MIT1002_00801 0.43 +1.0
888,182 - MIT1002_00801 0.43 +1.1
888,191 - MIT1002_00801 0.44 +4.9
888,261 - MIT1002_00801 0.49 +2.4
888,266 - MIT1002_00801 0.49 +2.4
888,275 + MIT1002_00801 0.49 +0.4
888,447 + MIT1002_00801 0.61 -0.4
888,450 + MIT1002_00801 0.61 +0.8
888,450 + MIT1002_00801 0.61 +0.3
888,450 + MIT1002_00801 0.61 -0.8
888,450 + MIT1002_00801 0.61 +0.2
888,455 - MIT1002_00801 0.61 -1.2
888,458 - MIT1002_00801 0.62 -0.4
888,458 - MIT1002_00801 0.62 -1.0
888,458 - MIT1002_00801 0.62 -0.3
888,458 - MIT1002_00801 0.62 +1.0
888,458 - MIT1002_00801 0.62 -0.5
888,467 - MIT1002_00801 0.62 -0.6
888,487 + MIT1002_00801 0.63 +2.0
888,500 + MIT1002_00801 0.64 -1.5

Or see this region's nucleotide sequence