Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00634 and MIT1002_00635 are separated by 132 nucleotides MIT1002_00635 and MIT1002_00636 are separated by 176 nucleotides MIT1002_00636 and MIT1002_00637 are separated by 297 nucleotides
MIT1002_00634: MIT1002_00634 - Methyl-accepting chemotaxis protein 4, at 681,827 to 683,449
_00634
MIT1002_00635: MIT1002_00635 - Leucine-responsive regulatory protein, at 683,582 to 684,040
_00635
MIT1002_00636: MIT1002_00636 - Alcohol dehydrogenase, at 684,217 to 685,263
_00636
MIT1002_00637: MIT1002_00637 - Bifunctional protein PutA, at 685,561 to 689,358
_00637
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 683.219 kb on + strand, within MIT1002_00634 at 683.253 kb on + strand, within MIT1002_00634 at 683.276 kb on + strand, within MIT1002_00634 at 683.282 kb on - strand, within MIT1002_00634 at 683.284 kb on - strand, within MIT1002_00634 at 683.285 kb on + strand, within MIT1002_00634 at 683.303 kb on - strand at 683.348 kb on - strand at 683.354 kb on + strand at 683.362 kb on - strand at 683.377 kb on + strand at 683.377 kb on + strand at 683.588 kb on + strand at 683.596 kb on - strand at 683.605 kb on - strand at 683.618 kb on - strand at 683.647 kb on + strand, within MIT1002_00635 at 683.671 kb on + strand, within MIT1002_00635 at 683.679 kb on - strand, within MIT1002_00635 at 683.679 kb on - strand, within MIT1002_00635 at 683.679 kb on - strand, within MIT1002_00635 at 683.759 kb on + strand, within MIT1002_00635 at 683.767 kb on - strand, within MIT1002_00635 at 683.767 kb on - strand, within MIT1002_00635 at 683.785 kb on - strand, within MIT1002_00635 at 683.785 kb on - strand, within MIT1002_00635 at 683.816 kb on + strand, within MIT1002_00635 at 683.816 kb on + strand, within MIT1002_00635 at 683.824 kb on - strand, within MIT1002_00635 at 683.824 kb on - strand, within MIT1002_00635 at 683.826 kb on + strand, within MIT1002_00635 at 683.834 kb on - strand, within MIT1002_00635 at 683.834 kb on - strand, within MIT1002_00635 at 683.834 kb on - strand, within MIT1002_00635 at 683.839 kb on + strand, within MIT1002_00635 at 683.847 kb on - strand, within MIT1002_00635 at 683.862 kb on - strand, within MIT1002_00635 at 683.876 kb on + strand, within MIT1002_00635 at 683.907 kb on - strand, within MIT1002_00635 at 683.913 kb on - strand, within MIT1002_00635 at 683.955 kb on + strand, within MIT1002_00635 at 683.987 kb on - strand, within MIT1002_00635 at 684.116 kb on + strand at 684.156 kb on + strand at 684.156 kb on + strand at 684.162 kb on - strand at 684.164 kb on - strand at 684.164 kb on - strand at 684.164 kb on - strand at 684.164 kb on - strand at 684.170 kb on - strand at 684.209 kb on + strand at 684.230 kb on - strand at 684.304 kb on - strand at 684.304 kb on - strand at 684.322 kb on + strand, within MIT1002_00636 at 684.373 kb on + strand, within MIT1002_00636 at 684.409 kb on + strand, within MIT1002_00636 at 684.421 kb on + strand, within MIT1002_00636 at 684.460 kb on - strand, within MIT1002_00636 at 684.504 kb on + strand, within MIT1002_00636 at 684.512 kb on - strand, within MIT1002_00636 at 684.522 kb on + strand, within MIT1002_00636 at 684.530 kb on - strand, within MIT1002_00636 at 684.541 kb on - strand, within MIT1002_00636 at 684.685 kb on + strand, within MIT1002_00636 at 684.693 kb on - strand, within MIT1002_00636 at 684.702 kb on + strand, within MIT1002_00636 at 684.710 kb on - strand, within MIT1002_00636 at 684.720 kb on - strand, within MIT1002_00636 at 684.727 kb on + strand, within MIT1002_00636 at 684.735 kb on - strand, within MIT1002_00636 at 684.735 kb on - strand, within MIT1002_00636 at 684.735 kb on - strand, within MIT1002_00636 at 684.735 kb on - strand, within MIT1002_00636 at 684.735 kb on - strand, within MIT1002_00636 at 684.735 kb on - strand, within MIT1002_00636 at 684.735 kb on - strand, within MIT1002_00636 at 684.737 kb on + strand, within MIT1002_00636 at 684.766 kb on + strand, within MIT1002_00636 at 684.929 kb on - strand, within MIT1002_00636 at 684.931 kb on - strand, within MIT1002_00636 at 685.034 kb on - strand, within MIT1002_00636 at 685.093 kb on + strand, within MIT1002_00636 at 685.093 kb on + strand, within MIT1002_00636 at 685.093 kb on + strand, within MIT1002_00636 at 685.099 kb on - strand, within MIT1002_00636 at 685.101 kb on - strand, within MIT1002_00636 at 685.156 kb on + strand, within MIT1002_00636 at 685.178 kb on - strand at 685.190 kb on + strand at 685.228 kb on - strand at 685.231 kb on + strand at 685.231 kb on + strand at 685.276 kb on + strand at 685.300 kb on + strand at 685.353 kb on + strand at 685.353 kb on + strand at 685.361 kb on - strand at 685.361 kb on - strand at 685.377 kb on + strand at 685.403 kb on + strand at 685.403 kb on + strand at 685.403 kb on + strand at 685.403 kb on + strand at 685.403 kb on + strand at 685.403 kb on + strand at 685.403 kb on + strand at 685.411 kb on - strand at 685.448 kb on + strand at 685.451 kb on - strand at 685.453 kb on + strand at 685.456 kb on - strand at 685.456 kb on - strand at 685.494 kb on - strand at 685.497 kb on + strand at 685.497 kb on + strand at 685.505 kb on - strand at 685.507 kb on + strand at 685.507 kb on + strand at 685.507 kb on + strand at 685.507 kb on + strand at 685.507 kb on + strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.515 kb on - strand at 685.525 kb on - strand at 685.561 kb on - strand at 685.589 kb on + strand at 685.613 kb on - strand at 685.702 kb on - strand at 685.788 kb on + strand at 685.796 kb on - strand at 685.807 kb on + strand at 685.807 kb on + strand at 685.822 kb on + strand at 685.828 kb on + strand at 685.884 kb on + strand at 685.892 kb on - strand at 685.892 kb on - strand at 685.909 kb on - strand at 685.982 kb on + strand, within MIT1002_00637 at 686.000 kb on - strand, within MIT1002_00637 at 686.000 kb on - strand, within MIT1002_00637 at 686.199 kb on + strand, within MIT1002_00637 at 686.210 kb on + strand, within MIT1002_00637 at 686.210 kb on + strand, within MIT1002_00637
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 683,219 + MIT1002_00634 0.86 -0.4 683,253 + MIT1002_00634 0.88 +0.1 683,276 + MIT1002_00634 0.89 +1.0 683,282 - MIT1002_00634 0.90 -1.0 683,284 - MIT1002_00634 0.90 +0.2 683,285 + MIT1002_00634 0.90 -1.0 683,303 - -0.9 683,348 - -1.6 683,354 + -0.5 683,362 - -0.6 683,377 + +1.6 683,377 + +0.1 683,588 + -1.5 683,596 - -0.2 683,605 - +0.5 683,618 - -0.4 683,647 + MIT1002_00635 0.14 -1.7 683,671 + MIT1002_00635 0.19 -1.5 683,679 - MIT1002_00635 0.21 -0.6 683,679 - MIT1002_00635 0.21 -0.5 683,679 - MIT1002_00635 0.21 -2.1 683,759 + MIT1002_00635 0.39 -1.3 683,767 - MIT1002_00635 0.40 +1.7 683,767 - MIT1002_00635 0.40 +0.7 683,785 - MIT1002_00635 0.44 -1.8 683,785 - MIT1002_00635 0.44 +1.0 683,816 + MIT1002_00635 0.51 -0.4 683,816 + MIT1002_00635 0.51 -1.8 683,824 - MIT1002_00635 0.53 -0.1 683,824 - MIT1002_00635 0.53 +0.7 683,826 + MIT1002_00635 0.53 +0.2 683,834 - MIT1002_00635 0.55 -0.2 683,834 - MIT1002_00635 0.55 +0.6 683,834 - MIT1002_00635 0.55 +0.5 683,839 + MIT1002_00635 0.56 +0.3 683,847 - MIT1002_00635 0.58 -2.1 683,862 - MIT1002_00635 0.61 -0.0 683,876 + MIT1002_00635 0.64 -1.4 683,907 - MIT1002_00635 0.71 -0.8 683,913 - MIT1002_00635 0.72 -0.4 683,955 + MIT1002_00635 0.81 -1.0 683,987 - MIT1002_00635 0.88 -1.3 684,116 + +0.2 684,156 + -0.3 684,156 + +1.3 684,162 - +1.6 684,164 - +0.6 684,164 - -0.3 684,164 - +1.2 684,164 - +1.5 684,170 - -0.6 684,209 + +0.7 684,230 - +0.3 684,304 - -2.9 684,304 - -0.5 684,322 + MIT1002_00636 0.10 -0.6 684,373 + MIT1002_00636 0.15 +0.8 684,409 + MIT1002_00636 0.18 +1.4 684,421 + MIT1002_00636 0.19 -0.0 684,460 - MIT1002_00636 0.23 +0.1 684,504 + MIT1002_00636 0.27 +1.6 684,512 - MIT1002_00636 0.28 +0.7 684,522 + MIT1002_00636 0.29 +1.4 684,530 - MIT1002_00636 0.30 -0.3 684,541 - MIT1002_00636 0.31 -3.1 684,685 + MIT1002_00636 0.45 -0.4 684,693 - MIT1002_00636 0.45 +0.6 684,702 + MIT1002_00636 0.46 -1.4 684,710 - MIT1002_00636 0.47 -0.3 684,720 - MIT1002_00636 0.48 -0.4 684,727 + MIT1002_00636 0.49 +0.2 684,735 - MIT1002_00636 0.49 -1.8 684,735 - MIT1002_00636 0.49 +3.2 684,735 - MIT1002_00636 0.49 +1.0 684,735 - MIT1002_00636 0.49 +1.0 684,735 - MIT1002_00636 0.49 -0.1 684,735 - MIT1002_00636 0.49 +0.3 684,735 - MIT1002_00636 0.49 -0.6 684,737 + MIT1002_00636 0.50 -0.4 684,766 + MIT1002_00636 0.52 +1.0 684,929 - MIT1002_00636 0.68 +1.0 684,931 - MIT1002_00636 0.68 +1.5 685,034 - MIT1002_00636 0.78 -2.1 685,093 + MIT1002_00636 0.84 -2.4 685,093 + MIT1002_00636 0.84 -1.3 685,093 + MIT1002_00636 0.84 -0.0 685,099 - MIT1002_00636 0.84 +0.9 685,101 - MIT1002_00636 0.84 +0.6 685,156 + MIT1002_00636 0.90 -0.9 685,178 - +1.9 685,190 + -1.9 685,228 - -0.8 685,231 + +0.5 685,231 + -1.2 685,276 + -1.2 685,300 + +1.2 685,353 + -0.7 685,353 + +0.3 685,361 - +1.2 685,361 - -0.7 685,377 + +1.2 685,403 + -1.6 685,403 + -1.4 685,403 + -0.4 685,403 + -0.5 685,403 + +0.1 685,403 + -1.1 685,403 + +0.4 685,411 - -1.0 685,448 + -0.3 685,451 - -3.1 685,453 + -1.1 685,456 - -1.2 685,456 - -0.6 685,494 - +0.1 685,497 + +2.1 685,497 + +1.3 685,505 - -0.7 685,507 + +1.4 685,507 + +1.4 685,507 + +1.5 685,507 + -0.2 685,507 + +0.2 685,515 - +2.1 685,515 - -1.0 685,515 - -0.6 685,515 - -0.5 685,515 - +0.6 685,515 - -0.2 685,515 - +0.4 685,515 - +0.6 685,525 - +0.2 685,561 - +1.2 685,589 + +0.5 685,613 - +0.2 685,702 - -0.7 685,788 + +0.6 685,796 - -0.4 685,807 + -1.1 685,807 + -0.4 685,822 + -0.6 685,828 + +0.1 685,884 + +0.1 685,892 - -0.8 685,892 - +1.4 685,909 - +0.7 685,982 + MIT1002_00637 0.11 +2.6 686,000 - MIT1002_00637 0.12 +1.7 686,000 - MIT1002_00637 0.12 -0.3 686,199 + MIT1002_00637 0.17 +0.2 686,210 + MIT1002_00637 0.17 -0.4 686,210 + MIT1002_00637 0.17 +0.9
Or see this region's nucleotide sequence