Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00615 and MIT1002_00616 are separated by 805 nucleotides MIT1002_00616 and MIT1002_00617 overlap by 1 nucleotides
MIT1002_00615: MIT1002_00615 - hypothetical protein, at 666,212 to 666,727
_00615
MIT1002_00616: MIT1002_00616 - hypothetical protein, at 667,533 to 668,594
_00616
MIT1002_00617: MIT1002_00617 - hypothetical protein, at 668,594 to 669,139
_00617
Position (kb) 667
668
669 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 667.123 kb on + strand at 667.196 kb on - strand at 667.210 kb on - strand at 667.250 kb on - strand at 667.364 kb on - strand at 667.366 kb on + strand at 667.372 kb on - strand at 667.374 kb on - strand at 667.374 kb on - strand at 667.422 kb on + strand at 667.432 kb on + strand at 667.449 kb on + strand at 667.451 kb on - strand at 667.457 kb on - strand at 667.525 kb on + strand at 667.527 kb on + strand at 667.575 kb on + strand at 667.592 kb on + strand at 667.656 kb on + strand, within MIT1002_00616 at 667.759 kb on + strand, within MIT1002_00616 at 667.786 kb on + strand, within MIT1002_00616 at 667.791 kb on + strand, within MIT1002_00616 at 667.794 kb on - strand, within MIT1002_00616 at 667.814 kb on - strand, within MIT1002_00616 at 668.060 kb on + strand, within MIT1002_00616 at 668.080 kb on - strand, within MIT1002_00616 at 668.092 kb on - strand, within MIT1002_00616 at 668.101 kb on + strand, within MIT1002_00616 at 668.117 kb on + strand, within MIT1002_00616 at 668.135 kb on + strand, within MIT1002_00616 at 668.180 kb on + strand, within MIT1002_00616 at 668.233 kb on + strand, within MIT1002_00616 at 668.241 kb on - strand, within MIT1002_00616 at 668.254 kb on - strand, within MIT1002_00616 at 668.274 kb on - strand, within MIT1002_00616 at 668.286 kb on - strand, within MIT1002_00616 at 668.287 kb on + strand, within MIT1002_00616 at 668.300 kb on + strand, within MIT1002_00616 at 668.308 kb on - strand, within MIT1002_00616 at 668.338 kb on + strand, within MIT1002_00616 at 668.338 kb on + strand, within MIT1002_00616 at 668.360 kb on - strand, within MIT1002_00616 at 668.364 kb on + strand, within MIT1002_00616 at 668.364 kb on + strand, within MIT1002_00616 at 668.364 kb on + strand, within MIT1002_00616 at 668.364 kb on + strand, within MIT1002_00616 at 668.371 kb on - strand, within MIT1002_00616 at 668.371 kb on - strand, within MIT1002_00616 at 668.372 kb on - strand, within MIT1002_00616 at 668.372 kb on - strand, within MIT1002_00616 at 668.374 kb on + strand, within MIT1002_00616 at 668.382 kb on - strand, within MIT1002_00616 at 668.382 kb on - strand, within MIT1002_00616 at 668.411 kb on + strand, within MIT1002_00616 at 668.420 kb on - strand, within MIT1002_00616 at 668.497 kb on + strand at 668.498 kb on - strand at 668.505 kb on - strand at 668.527 kb on + strand at 668.527 kb on + strand at 668.532 kb on + strand at 668.550 kb on - strand at 668.560 kb on + strand at 668.569 kb on + strand at 668.575 kb on + strand at 668.601 kb on + strand at 668.601 kb on + strand at 668.609 kb on - strand at 668.609 kb on - strand at 668.609 kb on - strand at 668.609 kb on - strand at 668.609 kb on - strand at 668.609 kb on - strand at 668.609 kb on - strand at 668.615 kb on + strand at 668.615 kb on + strand at 668.615 kb on + strand at 668.616 kb on - strand at 668.622 kb on - strand at 668.622 kb on - strand at 668.623 kb on - strand at 668.623 kb on - strand at 668.623 kb on - strand at 668.624 kb on + strand at 668.628 kb on - strand at 668.686 kb on + strand, within MIT1002_00617 at 668.695 kb on + strand, within MIT1002_00617 at 668.704 kb on - strand, within MIT1002_00617 at 668.709 kb on + strand, within MIT1002_00617 at 668.709 kb on + strand, within MIT1002_00617 at 668.717 kb on - strand, within MIT1002_00617 at 668.722 kb on - strand, within MIT1002_00617 at 668.727 kb on - strand, within MIT1002_00617 at 668.727 kb on - strand, within MIT1002_00617 at 668.777 kb on + strand, within MIT1002_00617 at 668.809 kb on + strand, within MIT1002_00617 at 668.810 kb on + strand, within MIT1002_00617 at 668.811 kb on + strand, within MIT1002_00617 at 668.811 kb on + strand, within MIT1002_00617 at 668.811 kb on + strand, within MIT1002_00617 at 668.819 kb on - strand, within MIT1002_00617 at 668.819 kb on - strand, within MIT1002_00617 at 668.819 kb on - strand, within MIT1002_00617 at 668.819 kb on - strand, within MIT1002_00617 at 668.819 kb on - strand, within MIT1002_00617 at 668.819 kb on - strand, within MIT1002_00617 at 668.823 kb on + strand, within MIT1002_00617 at 668.823 kb on + strand, within MIT1002_00617 at 668.823 kb on + strand, within MIT1002_00617 at 668.823 kb on + strand, within MIT1002_00617 at 668.824 kb on + strand, within MIT1002_00617 at 668.827 kb on - strand, within MIT1002_00617 at 668.827 kb on - strand, within MIT1002_00617 at 668.827 kb on - strand, within MIT1002_00617 at 668.828 kb on + strand, within MIT1002_00617 at 668.828 kb on + strand, within MIT1002_00617 at 668.828 kb on + strand, within MIT1002_00617 at 668.831 kb on - strand, within MIT1002_00617 at 668.835 kb on + strand, within MIT1002_00617 at 668.835 kb on + strand, within MIT1002_00617 at 668.836 kb on + strand, within MIT1002_00617 at 668.842 kb on - strand, within MIT1002_00617 at 668.843 kb on - strand, within MIT1002_00617 at 668.843 kb on - strand, within MIT1002_00617 at 668.843 kb on - strand, within MIT1002_00617 at 668.846 kb on - strand, within MIT1002_00617 at 668.860 kb on + strand, within MIT1002_00617 at 668.877 kb on - strand, within MIT1002_00617 at 668.879 kb on + strand, within MIT1002_00617 at 668.901 kb on - strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.904 kb on + strand, within MIT1002_00617 at 668.905 kb on + strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.912 kb on - strand, within MIT1002_00617 at 668.918 kb on - strand, within MIT1002_00617 at 669.053 kb on + strand, within MIT1002_00617 at 669.061 kb on - strand, within MIT1002_00617 at 669.061 kb on - strand, within MIT1002_00617 at 669.063 kb on + strand, within MIT1002_00617 at 669.063 kb on + strand, within MIT1002_00617 at 669.063 kb on + strand, within MIT1002_00617 at 669.063 kb on + strand, within MIT1002_00617 at 669.063 kb on + strand, within MIT1002_00617 at 669.071 kb on - strand, within MIT1002_00617 at 669.071 kb on - strand, within MIT1002_00617 at 669.071 kb on - strand, within MIT1002_00617 at 669.071 kb on - strand, within MIT1002_00617 at 669.071 kb on - strand, within MIT1002_00617 at 669.071 kb on - strand, within MIT1002_00617 at 669.071 kb on - strand, within MIT1002_00617 at 669.071 kb on - strand, within MIT1002_00617 at 669.072 kb on + strand, within MIT1002_00617 at 669.080 kb on - strand, within MIT1002_00617 at 669.144 kb on + strand at 669.149 kb on + strand at 669.149 kb on + strand at 669.149 kb on + strand at 669.149 kb on + strand at 669.152 kb on - strand at 669.154 kb on + strand at 669.154 kb on + strand at 669.154 kb on + strand at 669.154 kb on + strand at 669.154 kb on + strand at 669.154 kb on + strand at 669.157 kb on - strand at 669.157 kb on - strand at 669.157 kb on - strand at 669.159 kb on + strand at 669.162 kb on - strand at 669.162 kb on - strand at 669.162 kb on - strand at 669.162 kb on - strand at 669.162 kb on - strand at 669.162 kb on - strand at 669.162 kb on - strand at 669.162 kb on - strand at 669.164 kb on - strand at 669.166 kb on + strand at 669.167 kb on - strand at 669.174 kb on - strand at 669.184 kb on - strand at 669.226 kb on + strand at 669.226 kb on + strand at 669.241 kb on - strand at 669.241 kb on - strand at 669.268 kb on + strand at 669.268 kb on + strand at 669.268 kb on + strand at 669.268 kb on + strand at 669.268 kb on + strand at 669.276 kb on - strand at 669.276 kb on - strand at 669.290 kb on + strand at 669.290 kb on - strand at 669.312 kb on + strand at 669.323 kb on - strand at 669.346 kb on + strand at 669.358 kb on + strand at 669.442 kb on + strand at 669.442 kb on + strand at 669.450 kb on - strand at 669.450 kb on - strand at 669.452 kb on + strand at 669.460 kb on - strand at 669.462 kb on + strand at 669.462 kb on + strand at 669.462 kb on + strand at 669.470 kb on - strand at 669.470 kb on - strand at 669.470 kb on - strand at 669.470 kb on - strand at 669.496 kb on + strand at 669.496 kb on + strand at 669.504 kb on - strand at 669.550 kb on - strand at 669.555 kb on + strand at 669.556 kb on + strand at 669.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 667,123 + +2.3 667,196 - +1.3 667,210 - +1.0 667,250 - +0.5 667,364 - +0.8 667,366 + -0.4 667,372 - +0.8 667,374 - -0.2 667,374 - -1.0 667,422 + +1.1 667,432 + +1.7 667,449 + -0.3 667,451 - -0.2 667,457 - +0.8 667,525 + -1.4 667,527 + +2.2 667,575 + +0.1 667,592 + +1.9 667,656 + MIT1002_00616 0.12 -0.6 667,759 + MIT1002_00616 0.21 -0.7 667,786 + MIT1002_00616 0.24 +1.6 667,791 + MIT1002_00616 0.24 +0.3 667,794 - MIT1002_00616 0.25 -0.0 667,814 - MIT1002_00616 0.26 +1.1 668,060 + MIT1002_00616 0.50 +0.5 668,080 - MIT1002_00616 0.52 -0.8 668,092 - MIT1002_00616 0.53 +1.0 668,101 + MIT1002_00616 0.53 -0.7 668,117 + MIT1002_00616 0.55 +0.8 668,135 + MIT1002_00616 0.57 +2.2 668,180 + MIT1002_00616 0.61 -0.7 668,233 + MIT1002_00616 0.66 +1.0 668,241 - MIT1002_00616 0.67 -1.1 668,254 - MIT1002_00616 0.68 +0.0 668,274 - MIT1002_00616 0.70 -0.7 668,286 - MIT1002_00616 0.71 +0.1 668,287 + MIT1002_00616 0.71 -0.4 668,300 + MIT1002_00616 0.72 +0.9 668,308 - MIT1002_00616 0.73 -0.7 668,338 + MIT1002_00616 0.76 -0.7 668,338 + MIT1002_00616 0.76 +0.8 668,360 - MIT1002_00616 0.78 -0.4 668,364 + MIT1002_00616 0.78 -0.2 668,364 + MIT1002_00616 0.78 -0.6 668,364 + MIT1002_00616 0.78 -0.7 668,364 + MIT1002_00616 0.78 +1.8 668,371 - MIT1002_00616 0.79 -0.2 668,371 - MIT1002_00616 0.79 -1.4 668,372 - MIT1002_00616 0.79 -1.2 668,372 - MIT1002_00616 0.79 +1.6 668,374 + MIT1002_00616 0.79 +1.3 668,382 - MIT1002_00616 0.80 -0.7 668,382 - MIT1002_00616 0.80 +0.2 668,411 + MIT1002_00616 0.83 -1.3 668,420 - MIT1002_00616 0.84 -0.4 668,497 + -1.7 668,498 - +1.0 668,505 - +1.6 668,527 + -0.2 668,527 + -0.3 668,532 + -0.2 668,550 - +0.5 668,560 + -0.1 668,569 + +1.7 668,575 + -0.5 668,601 + -1.3 668,601 + -1.0 668,609 - +0.6 668,609 - +0.4 668,609 - +2.0 668,609 - -1.6 668,609 - +1.5 668,609 - -0.7 668,609 - -0.7 668,615 + +0.7 668,615 + +0.6 668,615 + +0.6 668,616 - -0.1 668,622 - -0.1 668,622 - -1.3 668,623 - +4.0 668,623 - +0.1 668,623 - +0.1 668,624 + -0.3 668,628 - -0.9 668,686 + MIT1002_00617 0.17 +1.3 668,695 + MIT1002_00617 0.18 -0.4 668,704 - MIT1002_00617 0.20 -0.0 668,709 + MIT1002_00617 0.21 +0.8 668,709 + MIT1002_00617 0.21 -1.2 668,717 - MIT1002_00617 0.23 +1.7 668,722 - MIT1002_00617 0.23 -0.9 668,727 - MIT1002_00617 0.24 -1.2 668,727 - MIT1002_00617 0.24 +0.4 668,777 + MIT1002_00617 0.34 +1.7 668,809 + MIT1002_00617 0.39 +1.1 668,810 + MIT1002_00617 0.40 -0.5 668,811 + MIT1002_00617 0.40 -1.5 668,811 + MIT1002_00617 0.40 +0.1 668,811 + MIT1002_00617 0.40 -1.0 668,819 - MIT1002_00617 0.41 -1.6 668,819 - MIT1002_00617 0.41 -0.0 668,819 - MIT1002_00617 0.41 +2.5 668,819 - MIT1002_00617 0.41 +0.1 668,819 - MIT1002_00617 0.41 -0.9 668,819 - MIT1002_00617 0.41 -1.2 668,823 + MIT1002_00617 0.42 +1.0 668,823 + MIT1002_00617 0.42 -1.3 668,823 + MIT1002_00617 0.42 -0.8 668,823 + MIT1002_00617 0.42 -0.9 668,824 + MIT1002_00617 0.42 -0.4 668,827 - MIT1002_00617 0.43 +0.4 668,827 - MIT1002_00617 0.43 -0.5 668,827 - MIT1002_00617 0.43 -1.9 668,828 + MIT1002_00617 0.43 +1.4 668,828 + MIT1002_00617 0.43 -0.1 668,828 + MIT1002_00617 0.43 -1.0 668,831 - MIT1002_00617 0.43 +0.8 668,835 + MIT1002_00617 0.44 +0.3 668,835 + MIT1002_00617 0.44 -0.6 668,836 + MIT1002_00617 0.44 +0.6 668,842 - MIT1002_00617 0.45 +0.1 668,843 - MIT1002_00617 0.46 +1.4 668,843 - MIT1002_00617 0.46 -0.1 668,843 - MIT1002_00617 0.46 -1.3 668,846 - MIT1002_00617 0.46 +0.0 668,860 + MIT1002_00617 0.49 +0.5 668,877 - MIT1002_00617 0.52 -0.2 668,879 + MIT1002_00617 0.52 +2.6 668,901 - MIT1002_00617 0.56 +1.0 668,904 + MIT1002_00617 0.57 +1.1 668,904 + MIT1002_00617 0.57 +0.5 668,904 + MIT1002_00617 0.57 +0.7 668,904 + MIT1002_00617 0.57 +1.4 668,904 + MIT1002_00617 0.57 +0.3 668,904 + MIT1002_00617 0.57 +0.9 668,904 + MIT1002_00617 0.57 -0.1 668,904 + MIT1002_00617 0.57 -0.1 668,904 + MIT1002_00617 0.57 +0.8 668,904 + MIT1002_00617 0.57 -0.9 668,904 + MIT1002_00617 0.57 -1.2 668,904 + MIT1002_00617 0.57 +3.2 668,904 + MIT1002_00617 0.57 -1.1 668,904 + MIT1002_00617 0.57 -0.3 668,904 + MIT1002_00617 0.57 -0.4 668,904 + MIT1002_00617 0.57 -1.2 668,904 + MIT1002_00617 0.57 +1.3 668,904 + MIT1002_00617 0.57 -0.9 668,904 + MIT1002_00617 0.57 -0.3 668,904 + MIT1002_00617 0.57 +0.1 668,904 + MIT1002_00617 0.57 -1.9 668,904 + MIT1002_00617 0.57 +0.2 668,904 + MIT1002_00617 0.57 +0.4 668,904 + MIT1002_00617 0.57 +1.6 668,905 + MIT1002_00617 0.57 -0.4 668,912 - MIT1002_00617 0.58 +0.0 668,912 - MIT1002_00617 0.58 -0.3 668,912 - MIT1002_00617 0.58 -0.8 668,912 - MIT1002_00617 0.58 -2.7 668,912 - MIT1002_00617 0.58 +2.0 668,912 - MIT1002_00617 0.58 -0.5 668,912 - MIT1002_00617 0.58 -1.1 668,912 - MIT1002_00617 0.58 +0.6 668,912 - MIT1002_00617 0.58 -0.4 668,912 - MIT1002_00617 0.58 -0.8 668,912 - MIT1002_00617 0.58 -1.9 668,912 - MIT1002_00617 0.58 +1.0 668,912 - MIT1002_00617 0.58 +0.9 668,912 - MIT1002_00617 0.58 -0.1 668,912 - MIT1002_00617 0.58 +1.0 668,912 - MIT1002_00617 0.58 +0.0 668,912 - MIT1002_00617 0.58 -0.1 668,912 - MIT1002_00617 0.58 +1.6 668,912 - MIT1002_00617 0.58 +0.4 668,912 - MIT1002_00617 0.58 +1.3 668,912 - MIT1002_00617 0.58 +1.0 668,912 - MIT1002_00617 0.58 -1.0 668,912 - MIT1002_00617 0.58 +0.5 668,918 - MIT1002_00617 0.59 +0.3 669,053 + MIT1002_00617 0.84 +1.3 669,061 - MIT1002_00617 0.86 +1.1 669,061 - MIT1002_00617 0.86 -1.0 669,063 + MIT1002_00617 0.86 +1.1 669,063 + MIT1002_00617 0.86 +0.3 669,063 + MIT1002_00617 0.86 +1.6 669,063 + MIT1002_00617 0.86 -0.5 669,063 + MIT1002_00617 0.86 -0.1 669,071 - MIT1002_00617 0.87 +0.8 669,071 - MIT1002_00617 0.87 +0.6 669,071 - MIT1002_00617 0.87 +1.1 669,071 - MIT1002_00617 0.87 -0.4 669,071 - MIT1002_00617 0.87 +0.3 669,071 - MIT1002_00617 0.87 -0.3 669,071 - MIT1002_00617 0.87 +1.5 669,071 - MIT1002_00617 0.87 -1.3 669,072 + MIT1002_00617 0.88 -0.7 669,080 - MIT1002_00617 0.89 -0.7 669,144 + -2.6 669,149 + +0.4 669,149 + -0.4 669,149 + -0.1 669,149 + +0.0 669,152 - +0.7 669,154 + -0.8 669,154 + +0.4 669,154 + -1.3 669,154 + -1.0 669,154 + -2.2 669,154 + -1.3 669,157 - -1.7 669,157 - -0.0 669,157 - -0.6 669,159 + -0.4 669,162 - -0.1 669,162 - -1.0 669,162 - -1.8 669,162 - -1.3 669,162 - -0.1 669,162 - +1.2 669,162 - -0.0 669,162 - +0.1 669,164 - +0.1 669,166 + +1.6 669,167 - +0.1 669,174 - -0.7 669,184 - -0.0 669,226 + -1.1 669,226 + +1.1 669,241 - -0.0 669,241 - +1.3 669,268 + -0.4 669,268 + -2.1 669,268 + +0.7 669,268 + +0.7 669,268 + -0.4 669,276 - -1.8 669,276 - +1.7 669,290 + +0.9 669,290 - +0.2 669,312 + -0.9 669,323 - -0.8 669,346 + -0.9 669,358 + -0.6 669,442 + +0.4 669,442 + -0.4 669,450 - -2.7 669,450 - -0.3 669,452 + -0.0 669,460 - -2.3 669,462 + +1.1 669,462 + +0.7 669,462 + +1.8 669,470 - -0.2 669,470 - -1.4 669,470 - -1.0 669,470 - +0.8 669,496 + +0.3 669,496 + -1.8 669,504 - +1.2 669,550 - -0.1 669,555 + +0.5 669,556 + -0.0 669,556 + -1.1
Or see this region's nucleotide sequence