Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00602

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00601 and MIT1002_00602 are separated by 413 nucleotidesMIT1002_00602 and MIT1002_00603 are separated by 27 nucleotidesMIT1002_00603 and MIT1002_00604 are separated by 20 nucleotides MIT1002_00601: MIT1002_00601 - hypothetical protein, at 653,230 to 654,849 _00601 MIT1002_00602: MIT1002_00602 - hypothetical protein, at 655,263 to 655,595 _00602 MIT1002_00603: MIT1002_00603 - hypothetical protein, at 655,623 to 656,162 _00603 MIT1002_00604: MIT1002_00604 - hypothetical protein, at 656,183 to 656,878 _00604 Position (kb) 655 656Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 654.315 kb on - strand, within MIT1002_00601at 654.350 kb on - strand, within MIT1002_00601at 654.378 kb on - strand, within MIT1002_00601at 654.385 kb on + strand, within MIT1002_00601at 654.385 kb on + strand, within MIT1002_00601at 654.385 kb on + strand, within MIT1002_00601at 654.385 kb on + strand, within MIT1002_00601at 654.393 kb on - strand, within MIT1002_00601at 654.393 kb on - strand, within MIT1002_00601at 654.400 kb on + strand, within MIT1002_00601at 654.400 kb on - strand, within MIT1002_00601at 654.403 kb on - strand, within MIT1002_00601at 654.413 kb on + strand, within MIT1002_00601at 654.469 kb on + strand, within MIT1002_00601at 654.476 kb on - strand, within MIT1002_00601at 654.478 kb on + strand, within MIT1002_00601at 654.493 kb on - strand, within MIT1002_00601at 654.543 kb on + strand, within MIT1002_00601at 654.546 kb on - strand, within MIT1002_00601at 654.548 kb on + strand, within MIT1002_00601at 654.571 kb on + strand, within MIT1002_00601at 654.615 kb on + strand, within MIT1002_00601at 654.615 kb on + strand, within MIT1002_00601at 654.615 kb on + strand, within MIT1002_00601at 654.623 kb on - strand, within MIT1002_00601at 654.682 kb on - strand, within MIT1002_00601at 654.693 kb on - strandat 654.693 kb on - strandat 654.711 kb on - strandat 654.717 kb on + strandat 654.720 kb on + strandat 654.730 kb on + strandat 654.738 kb on - strandat 654.796 kb on + strandat 654.919 kb on + strandat 655.014 kb on + strandat 655.036 kb on - strandat 655.036 kb on - strandat 655.054 kb on + strandat 655.102 kb on - strandat 655.102 kb on - strandat 655.124 kb on + strandat 655.124 kb on + strandat 655.124 kb on + strandat 655.124 kb on + strandat 655.153 kb on + strandat 655.224 kb on + strandat 655.228 kb on + strandat 655.232 kb on - strandat 655.232 kb on - strandat 655.244 kb on - strandat 655.247 kb on + strandat 655.253 kb on + strandat 655.253 kb on + strandat 655.253 kb on + strandat 655.253 kb on + strandat 655.261 kb on - strandat 655.261 kb on - strandat 655.281 kb on - strandat 655.352 kb on + strand, within MIT1002_00602at 655.574 kb on - strandat 655.629 kb on + strandat 655.675 kb on + strandat 655.675 kb on + strandat 655.675 kb on + strandat 655.683 kb on - strand, within MIT1002_00603at 655.730 kb on + strand, within MIT1002_00603at 655.738 kb on - strand, within MIT1002_00603at 655.754 kb on + strand, within MIT1002_00603at 655.754 kb on + strand, within MIT1002_00603at 655.754 kb on + strand, within MIT1002_00603at 655.771 kb on + strand, within MIT1002_00603at 655.774 kb on - strand, within MIT1002_00603at 655.827 kb on + strand, within MIT1002_00603at 655.840 kb on + strand, within MIT1002_00603at 655.893 kb on + strand, within MIT1002_00603at 656.030 kb on + strand, within MIT1002_00603at 656.138 kb on - strandat 656.214 kb on - strandat 656.237 kb on + strandat 656.245 kb on - strandat 656.255 kb on - strand, within MIT1002_00604at 656.255 kb on - strand, within MIT1002_00604at 656.311 kb on + strand, within MIT1002_00604at 656.323 kb on - strand, within MIT1002_00604at 656.336 kb on + strand, within MIT1002_00604at 656.341 kb on + strand, within MIT1002_00604at 656.341 kb on + strand, within MIT1002_00604at 656.341 kb on + strand, within MIT1002_00604at 656.341 kb on + strand, within MIT1002_00604at 656.349 kb on - strand, within MIT1002_00604at 656.349 kb on - strand, within MIT1002_00604at 656.349 kb on - strand, within MIT1002_00604at 656.422 kb on + strand, within MIT1002_00604at 656.447 kb on + strand, within MIT1002_00604at 656.447 kb on + strand, within MIT1002_00604at 656.452 kb on + strand, within MIT1002_00604at 656.455 kb on - strand, within MIT1002_00604at 656.455 kb on - strand, within MIT1002_00604at 656.455 kb on - strand, within MIT1002_00604at 656.457 kb on + strand, within MIT1002_00604at 656.562 kb on + strand, within MIT1002_00604at 656.594 kb on + strand, within MIT1002_00604at 656.594 kb on + strand, within MIT1002_00604at 656.594 kb on + strand, within MIT1002_00604

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
remove
654,315 - MIT1002_00601 0.67 -1.4
654,350 - MIT1002_00601 0.69 +0.6
654,378 - MIT1002_00601 0.71 -1.2
654,385 + MIT1002_00601 0.71 -0.7
654,385 + MIT1002_00601 0.71 +1.2
654,385 + MIT1002_00601 0.71 -0.7
654,385 + MIT1002_00601 0.71 -0.2
654,393 - MIT1002_00601 0.72 +1.0
654,393 - MIT1002_00601 0.72 -0.5
654,400 + MIT1002_00601 0.72 -0.3
654,400 - MIT1002_00601 0.72 +2.0
654,403 - MIT1002_00601 0.72 +1.3
654,413 + MIT1002_00601 0.73 +1.2
654,469 + MIT1002_00601 0.76 -0.7
654,476 - MIT1002_00601 0.77 +0.4
654,478 + MIT1002_00601 0.77 +0.8
654,493 - MIT1002_00601 0.78 +0.6
654,543 + MIT1002_00601 0.81 +0.0
654,546 - MIT1002_00601 0.81 -0.7
654,548 + MIT1002_00601 0.81 -0.1
654,571 + MIT1002_00601 0.83 +0.4
654,615 + MIT1002_00601 0.85 -0.1
654,615 + MIT1002_00601 0.85 -1.1
654,615 + MIT1002_00601 0.85 +2.1
654,623 - MIT1002_00601 0.86 +1.0
654,682 - MIT1002_00601 0.90 +1.2
654,693 - +2.1
654,693 - -0.6
654,711 - -0.6
654,717 + -1.7
654,720 + -1.1
654,730 + +0.3
654,738 - +0.5
654,796 + -0.4
654,919 + +0.4
655,014 + -0.8
655,036 - +1.6
655,036 - -1.4
655,054 + -0.8
655,102 - +0.7
655,102 - -0.8
655,124 + -2.7
655,124 + +2.1
655,124 + +0.4
655,124 + +3.7
655,153 + +0.3
655,224 + -0.8
655,228 + -0.3
655,232 - +0.4
655,232 - +1.1
655,244 - -1.7
655,247 + +0.0
655,253 + -1.0
655,253 + +0.4
655,253 + +0.1
655,253 + -1.1
655,261 - +0.7
655,261 - -0.9
655,281 - +1.2
655,352 + MIT1002_00602 0.27 -2.1
655,574 - +0.9
655,629 + +0.1
655,675 + -0.8
655,675 + -0.5
655,675 + +0.2
655,683 - MIT1002_00603 0.11 +6.4
655,730 + MIT1002_00603 0.20 +1.4
655,738 - MIT1002_00603 0.21 -1.0
655,754 + MIT1002_00603 0.24 -2.1
655,754 + MIT1002_00603 0.24 -0.9
655,754 + MIT1002_00603 0.24 +0.8
655,771 + MIT1002_00603 0.27 -2.2
655,774 - MIT1002_00603 0.28 -1.4
655,827 + MIT1002_00603 0.38 +1.0
655,840 + MIT1002_00603 0.40 -3.6
655,893 + MIT1002_00603 0.50 +1.0
656,030 + MIT1002_00603 0.75 +0.2
656,138 - -0.5
656,214 - +1.0
656,237 + +0.3
656,245 - -0.4
656,255 - MIT1002_00604 0.10 +1.1
656,255 - MIT1002_00604 0.10 +0.8
656,311 + MIT1002_00604 0.18 +2.1
656,323 - MIT1002_00604 0.20 -0.9
656,336 + MIT1002_00604 0.22 +0.1
656,341 + MIT1002_00604 0.23 +0.2
656,341 + MIT1002_00604 0.23 -0.2
656,341 + MIT1002_00604 0.23 +0.4
656,341 + MIT1002_00604 0.23 -0.9
656,349 - MIT1002_00604 0.24 -0.1
656,349 - MIT1002_00604 0.24 -1.2
656,349 - MIT1002_00604 0.24 +2.2
656,422 + MIT1002_00604 0.34 -0.7
656,447 + MIT1002_00604 0.38 +1.0
656,447 + MIT1002_00604 0.38 +0.7
656,452 + MIT1002_00604 0.39 -0.2
656,455 - MIT1002_00604 0.39 -3.0
656,455 - MIT1002_00604 0.39 -0.5
656,455 - MIT1002_00604 0.39 -2.1
656,457 + MIT1002_00604 0.39 +0.0
656,562 + MIT1002_00604 0.54 -0.0
656,594 + MIT1002_00604 0.59 +0.6
656,594 + MIT1002_00604 0.59 +1.6
656,594 + MIT1002_00604 0.59 +2.1

Or see this region's nucleotide sequence