Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00550

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00549 and MIT1002_00550 are separated by 19 nucleotidesMIT1002_00550 and MIT1002_00551 are separated by 308 nucleotides MIT1002_00549: MIT1002_00549 - Phosphate-selective porin, at 597,701 to 598,819 _00549 MIT1002_00550: MIT1002_00550 - lysine-arginine-ornithine-binding periplasmic protein, at 598,839 to 599,636 _00550 MIT1002_00551: MIT1002_00551 - Mn2+ and Fe2+ transporters of the NRAMP family protein, at 599,945 to 601,216 _00551 Position (kb) 598 599 600Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 597.849 kb on - strand, within MIT1002_00549at 597.941 kb on + strand, within MIT1002_00549at 597.951 kb on + strand, within MIT1002_00549at 598.014 kb on + strand, within MIT1002_00549at 598.014 kb on + strand, within MIT1002_00549at 598.022 kb on + strand, within MIT1002_00549at 598.369 kb on - strand, within MIT1002_00549at 598.372 kb on + strand, within MIT1002_00549at 598.397 kb on + strand, within MIT1002_00549at 598.455 kb on + strand, within MIT1002_00549at 598.457 kb on + strand, within MIT1002_00549at 598.465 kb on - strand, within MIT1002_00549at 598.492 kb on - strand, within MIT1002_00549at 598.492 kb on - strand, within MIT1002_00549at 598.492 kb on - strand, within MIT1002_00549at 598.497 kb on - strand, within MIT1002_00549at 598.555 kb on - strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.604 kb on + strand, within MIT1002_00549at 598.606 kb on + strand, within MIT1002_00549at 598.612 kb on - strand, within MIT1002_00549at 598.612 kb on - strand, within MIT1002_00549at 598.612 kb on - strand, within MIT1002_00549at 598.623 kb on - strand, within MIT1002_00549at 598.656 kb on + strand, within MIT1002_00549at 598.712 kb on - strandat 598.740 kb on + strandat 598.748 kb on - strandat 598.862 kb on + strandat 598.899 kb on - strandat 598.934 kb on + strand, within MIT1002_00550at 598.940 kb on - strand, within MIT1002_00550at 598.940 kb on - strand, within MIT1002_00550at 598.972 kb on + strand, within MIT1002_00550at 598.985 kb on + strand, within MIT1002_00550at 598.993 kb on - strand, within MIT1002_00550at 599.021 kb on + strand, within MIT1002_00550at 599.054 kb on + strand, within MIT1002_00550at 599.066 kb on + strand, within MIT1002_00550at 599.149 kb on - strand, within MIT1002_00550at 599.149 kb on - strand, within MIT1002_00550at 599.149 kb on - strand, within MIT1002_00550at 599.203 kb on - strand, within MIT1002_00550at 599.242 kb on - strand, within MIT1002_00550at 599.301 kb on - strand, within MIT1002_00550at 599.382 kb on + strand, within MIT1002_00550at 599.382 kb on + strand, within MIT1002_00550at 599.390 kb on - strand, within MIT1002_00550at 599.435 kb on - strand, within MIT1002_00550at 599.530 kb on + strand, within MIT1002_00550at 599.538 kb on - strand, within MIT1002_00550at 599.538 kb on - strand, within MIT1002_00550at 599.551 kb on + strand, within MIT1002_00550at 599.754 kb on + strandat 599.754 kb on + strandat 599.758 kb on + strandat 599.766 kb on - strandat 599.798 kb on + strandat 599.832 kb on + strandat 599.840 kb on - strandat 599.840 kb on - strandat 599.939 kb on - strandat 599.947 kb on + strandat 599.982 kb on + strandat 600.006 kb on + strandat 600.014 kb on - strandat 600.014 kb on - strandat 600.018 kb on - strandat 600.019 kb on - strandat 600.019 kb on - strandat 600.073 kb on + strand, within MIT1002_00551at 600.144 kb on - strand, within MIT1002_00551at 600.146 kb on + strand, within MIT1002_00551at 600.154 kb on - strand, within MIT1002_00551at 600.154 kb on - strand, within MIT1002_00551at 600.173 kb on - strand, within MIT1002_00551at 600.253 kb on + strand, within MIT1002_00551at 600.269 kb on + strand, within MIT1002_00551at 600.296 kb on - strand, within MIT1002_00551at 600.397 kb on - strand, within MIT1002_00551at 600.418 kb on - strand, within MIT1002_00551at 600.418 kb on - strand, within MIT1002_00551at 600.432 kb on - strand, within MIT1002_00551at 600.486 kb on + strand, within MIT1002_00551at 600.502 kb on + strand, within MIT1002_00551at 600.516 kb on - strand, within MIT1002_00551at 600.610 kb on + strand, within MIT1002_00551at 600.617 kb on + strand, within MIT1002_00551at 600.636 kb on + strand, within MIT1002_00551at 600.636 kb on + strand, within MIT1002_00551

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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597,849 - MIT1002_00549 0.13 -0.5
597,941 + MIT1002_00549 0.21 -2.6
597,951 + MIT1002_00549 0.22 -0.1
598,014 + MIT1002_00549 0.28 +3.2
598,014 + MIT1002_00549 0.28 -0.5
598,022 + MIT1002_00549 0.29 -0.7
598,369 - MIT1002_00549 0.60 +0.0
598,372 + MIT1002_00549 0.60 +1.3
598,397 + MIT1002_00549 0.62 -1.1
598,455 + MIT1002_00549 0.67 +0.4
598,457 + MIT1002_00549 0.68 -0.5
598,465 - MIT1002_00549 0.68 -0.3
598,492 - MIT1002_00549 0.71 +1.6
598,492 - MIT1002_00549 0.71 -0.4
598,492 - MIT1002_00549 0.71 +0.2
598,497 - MIT1002_00549 0.71 -0.4
598,555 - MIT1002_00549 0.76 -0.6
598,604 + MIT1002_00549 0.81 -2.0
598,604 + MIT1002_00549 0.81 +1.5
598,604 + MIT1002_00549 0.81 +1.1
598,604 + MIT1002_00549 0.81 +0.8
598,604 + MIT1002_00549 0.81 -0.0
598,606 + MIT1002_00549 0.81 +0.6
598,612 - MIT1002_00549 0.81 -0.3
598,612 - MIT1002_00549 0.81 +2.0
598,612 - MIT1002_00549 0.81 +0.4
598,623 - MIT1002_00549 0.82 +0.9
598,656 + MIT1002_00549 0.85 -0.6
598,712 - -0.3
598,740 + -0.2
598,748 - +0.9
598,862 + +1.4
598,899 - +0.7
598,934 + MIT1002_00550 0.12 -1.3
598,940 - MIT1002_00550 0.13 -1.2
598,940 - MIT1002_00550 0.13 -0.7
598,972 + MIT1002_00550 0.17 -1.1
598,985 + MIT1002_00550 0.18 -0.4
598,993 - MIT1002_00550 0.19 -0.9
599,021 + MIT1002_00550 0.23 -1.6
599,054 + MIT1002_00550 0.27 -1.9
599,066 + MIT1002_00550 0.28 -1.1
599,149 - MIT1002_00550 0.39 -0.4
599,149 - MIT1002_00550 0.39 -0.7
599,149 - MIT1002_00550 0.39 -0.8
599,203 - MIT1002_00550 0.46 -1.1
599,242 - MIT1002_00550 0.51 +0.3
599,301 - MIT1002_00550 0.58 -1.6
599,382 + MIT1002_00550 0.68 -0.1
599,382 + MIT1002_00550 0.68 +1.0
599,390 - MIT1002_00550 0.69 -0.1
599,435 - MIT1002_00550 0.75 -3.1
599,530 + MIT1002_00550 0.87 -0.1
599,538 - MIT1002_00550 0.88 +1.0
599,538 - MIT1002_00550 0.88 +1.2
599,551 + MIT1002_00550 0.89 -2.1
599,754 + +0.8
599,754 + +1.3
599,758 + +0.7
599,766 - -1.7
599,798 + -0.2
599,832 + +0.8
599,840 - -0.4
599,840 - -0.3
599,939 - -0.2
599,947 + -1.0
599,982 + -0.2
600,006 + +0.4
600,014 - -0.2
600,014 - +0.9
600,018 - -2.1
600,019 - -1.7
600,019 - -0.8
600,073 + MIT1002_00551 0.10 +0.3
600,144 - MIT1002_00551 0.16 +0.4
600,146 + MIT1002_00551 0.16 +0.7
600,154 - MIT1002_00551 0.16 -0.3
600,154 - MIT1002_00551 0.16 -2.3
600,173 - MIT1002_00551 0.18 +0.1
600,253 + MIT1002_00551 0.24 +0.1
600,269 + MIT1002_00551 0.25 +0.9
600,296 - MIT1002_00551 0.28 -2.8
600,397 - MIT1002_00551 0.36 +3.2
600,418 - MIT1002_00551 0.37 -0.0
600,418 - MIT1002_00551 0.37 -0.8
600,432 - MIT1002_00551 0.38 +0.2
600,486 + MIT1002_00551 0.43 +0.4
600,502 + MIT1002_00551 0.44 +2.6
600,516 - MIT1002_00551 0.45 +0.8
600,610 + MIT1002_00551 0.52 +0.8
600,617 + MIT1002_00551 0.53 +0.4
600,636 + MIT1002_00551 0.54 -1.7
600,636 + MIT1002_00551 0.54 -0.0

Or see this region's nucleotide sequence