Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00456 and MIT1002_00457 are separated by 202 nucleotides MIT1002_00457 and MIT1002_00458 are separated by 155 nucleotides
MIT1002_00456: MIT1002_00456 - hypothetical protein, at 499,756 to 500,742
_00456
MIT1002_00457: MIT1002_00457 - Disulfide-bond oxidoreductase YghU, at 500,945 to 501,802
_00457
MIT1002_00458: MIT1002_00458 - Transposase, at 501,958 to 503,154
_00458
Position (kb) 500
501
502 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 499.945 kb on - strand, within MIT1002_00456 at 500.076 kb on + strand, within MIT1002_00456 at 500.076 kb on - strand, within MIT1002_00456 at 500.248 kb on + strand, within MIT1002_00456 at 500.256 kb on - strand, within MIT1002_00456 at 500.364 kb on - strand, within MIT1002_00456 at 500.372 kb on - strand, within MIT1002_00456 at 500.374 kb on + strand, within MIT1002_00456 at 500.377 kb on - strand, within MIT1002_00456 at 500.382 kb on - strand, within MIT1002_00456 at 500.458 kb on + strand, within MIT1002_00456 at 500.458 kb on + strand, within MIT1002_00456 at 500.466 kb on - strand, within MIT1002_00456 at 500.508 kb on - strand, within MIT1002_00456 at 500.513 kb on - strand, within MIT1002_00456 at 500.525 kb on + strand, within MIT1002_00456 at 500.542 kb on + strand, within MIT1002_00456 at 500.586 kb on + strand, within MIT1002_00456 at 500.592 kb on - strand, within MIT1002_00456 at 500.663 kb on - strand at 500.687 kb on + strand at 500.732 kb on + strand at 500.740 kb on - strand at 500.772 kb on - strand at 500.779 kb on + strand at 500.867 kb on - strand at 500.881 kb on + strand at 500.906 kb on + strand at 500.906 kb on + strand at 500.909 kb on - strand at 500.936 kb on - strand at 501.026 kb on - strand at 501.032 kb on + strand, within MIT1002_00457 at 501.040 kb on - strand, within MIT1002_00457 at 501.085 kb on + strand, within MIT1002_00457 at 501.086 kb on - strand, within MIT1002_00457 at 501.131 kb on + strand, within MIT1002_00457 at 501.152 kb on + strand, within MIT1002_00457 at 501.152 kb on + strand, within MIT1002_00457 at 501.189 kb on + strand, within MIT1002_00457 at 501.298 kb on - strand, within MIT1002_00457 at 501.434 kb on - strand, within MIT1002_00457 at 501.436 kb on + strand, within MIT1002_00457 at 501.444 kb on + strand, within MIT1002_00457 at 501.444 kb on - strand, within MIT1002_00457 at 501.452 kb on - strand, within MIT1002_00457 at 501.520 kb on - strand, within MIT1002_00457 at 501.541 kb on + strand, within MIT1002_00457 at 501.570 kb on - strand, within MIT1002_00457 at 501.638 kb on - strand, within MIT1002_00457 at 501.645 kb on - strand, within MIT1002_00457 at 501.652 kb on - strand, within MIT1002_00457 at 501.689 kb on - strand, within MIT1002_00457 at 501.707 kb on - strand, within MIT1002_00457 at 501.727 kb on + strand at 501.727 kb on + strand at 501.727 kb on + strand at 501.727 kb on + strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.810 kb on + strand at 501.815 kb on + strand at 501.818 kb on - strand at 501.823 kb on - strand at 501.823 kb on - strand at 501.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 499,945 - MIT1002_00456 0.19 -3.8 500,076 + MIT1002_00456 0.32 +0.3 500,076 - MIT1002_00456 0.32 +1.0 500,248 + MIT1002_00456 0.50 +1.8 500,256 - MIT1002_00456 0.51 -0.2 500,364 - MIT1002_00456 0.62 -2.1 500,372 - MIT1002_00456 0.62 -0.6 500,374 + MIT1002_00456 0.63 -0.7 500,377 - MIT1002_00456 0.63 -0.4 500,382 - MIT1002_00456 0.63 +1.6 500,458 + MIT1002_00456 0.71 -0.4 500,458 + MIT1002_00456 0.71 -1.1 500,466 - MIT1002_00456 0.72 -0.8 500,508 - MIT1002_00456 0.76 +1.3 500,513 - MIT1002_00456 0.77 -0.9 500,525 + MIT1002_00456 0.78 -0.2 500,542 + MIT1002_00456 0.80 -1.5 500,586 + MIT1002_00456 0.84 -0.0 500,592 - MIT1002_00456 0.85 -1.6 500,663 - +0.3 500,687 + +1.1 500,732 + +0.8 500,740 - -0.7 500,772 - -2.4 500,779 + +0.8 500,867 - -1.7 500,881 + +2.0 500,906 + +2.6 500,906 + +0.2 500,909 - -1.5 500,936 - -0.2 501,026 - +1.0 501,032 + MIT1002_00457 0.10 +0.6 501,040 - MIT1002_00457 0.11 +1.6 501,085 + MIT1002_00457 0.16 +0.7 501,086 - MIT1002_00457 0.16 -0.1 501,131 + MIT1002_00457 0.22 -1.0 501,152 + MIT1002_00457 0.24 +0.5 501,152 + MIT1002_00457 0.24 -1.9 501,189 + MIT1002_00457 0.28 +0.5 501,298 - MIT1002_00457 0.41 +0.1 501,434 - MIT1002_00457 0.57 -2.5 501,436 + MIT1002_00457 0.57 -0.2 501,444 + MIT1002_00457 0.58 -0.7 501,444 - MIT1002_00457 0.58 +1.3 501,452 - MIT1002_00457 0.59 -1.4 501,520 - MIT1002_00457 0.67 -1.2 501,541 + MIT1002_00457 0.69 -0.9 501,570 - MIT1002_00457 0.73 +0.3 501,638 - MIT1002_00457 0.81 -0.3 501,645 - MIT1002_00457 0.82 -0.6 501,652 - MIT1002_00457 0.82 +0.4 501,689 - MIT1002_00457 0.87 +0.3 501,707 - MIT1002_00457 0.89 -0.0 501,727 + -0.7 501,727 + -2.0 501,727 + -0.1 501,727 + -0.3 501,735 - -0.1 501,735 - -1.7 501,810 + +0.6 501,815 + -0.7 501,818 - +2.2 501,823 - -0.7 501,823 - -1.0 501,844 - -0.8
Or see this region's nucleotide sequence