Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00438 and MIT1002_00439 are separated by 297 nucleotides MIT1002_00439 and MIT1002_00440 are separated by 100 nucleotides MIT1002_00440 and MIT1002_00441 are separated by 65 nucleotides
MIT1002_00438: MIT1002_00438 - HDOD domain protein, at 479,946 to 481,112
_00438
MIT1002_00439: MIT1002_00439 - Para-aminobenzoate synthase glutamine amidotransferase component II, at 481,410 to 481,994
_00439
MIT1002_00440: MIT1002_00440 - Tryptophan--tRNA ligase, at 482,095 to 483,102
_00440
MIT1002_00441: MIT1002_00441 - Ribulose-phosphate 3-epimerase, at 483,168 to 483,845
_00441
Position (kb) 482
483
484 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 481.233 kb on + strand at 481.305 kb on - strand at 481.385 kb on - strand at 481.417 kb on + strand at 481.477 kb on + strand, within MIT1002_00439 at 481.477 kb on + strand, within MIT1002_00439 at 481.482 kb on + strand, within MIT1002_00439 at 481.482 kb on + strand, within MIT1002_00439 at 481.485 kb on - strand, within MIT1002_00439 at 481.485 kb on - strand, within MIT1002_00439 at 481.490 kb on - strand, within MIT1002_00439 at 481.490 kb on - strand, within MIT1002_00439 at 481.491 kb on + strand, within MIT1002_00439 at 481.562 kb on + strand, within MIT1002_00439 at 481.562 kb on + strand, within MIT1002_00439 at 481.570 kb on - strand, within MIT1002_00439 at 481.645 kb on + strand, within MIT1002_00439 at 481.655 kb on + strand, within MIT1002_00439 at 481.660 kb on + strand, within MIT1002_00439 at 481.694 kb on + strand, within MIT1002_00439 at 481.703 kb on + strand, within MIT1002_00439 at 481.703 kb on + strand, within MIT1002_00439 at 481.703 kb on - strand, within MIT1002_00439 at 481.703 kb on - strand, within MIT1002_00439 at 481.711 kb on - strand, within MIT1002_00439 at 481.739 kb on - strand, within MIT1002_00439 at 481.817 kb on - strand, within MIT1002_00439 at 481.823 kb on + strand, within MIT1002_00439 at 481.846 kb on + strand, within MIT1002_00439 at 481.885 kb on + strand, within MIT1002_00439 at 481.910 kb on - strand, within MIT1002_00439 at 481.913 kb on + strand, within MIT1002_00439 at 481.921 kb on - strand, within MIT1002_00439 at 481.924 kb on + strand, within MIT1002_00439 at 481.924 kb on + strand, within MIT1002_00439 at 481.932 kb on - strand, within MIT1002_00439 at 481.934 kb on + strand, within MIT1002_00439 at 481.952 kb on + strand at 481.960 kb on - strand at 481.986 kb on + strand at 481.991 kb on + strand at 481.991 kb on + strand at 481.999 kb on + strand at 482.053 kb on - strand at 483.899 kb on - strand at 483.934 kb on - strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.951 kb on - strand at 483.951 kb on - strand at 483.951 kb on - strand at 483.951 kb on - strand at 483.984 kb on - strand at 484.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 481,233 + -1.4 481,305 - +0.3 481,385 - -0.2 481,417 + +1.0 481,477 + MIT1002_00439 0.11 -2.4 481,477 + MIT1002_00439 0.11 -2.7 481,482 + MIT1002_00439 0.12 +0.8 481,482 + MIT1002_00439 0.12 -1.6 481,485 - MIT1002_00439 0.13 -4.9 481,485 - MIT1002_00439 0.13 -0.9 481,490 - MIT1002_00439 0.14 +1.3 481,490 - MIT1002_00439 0.14 -0.9 481,491 + MIT1002_00439 0.14 -0.5 481,562 + MIT1002_00439 0.26 -1.9 481,562 + MIT1002_00439 0.26 -3.0 481,570 - MIT1002_00439 0.27 -0.2 481,645 + MIT1002_00439 0.40 -0.6 481,655 + MIT1002_00439 0.42 -1.6 481,660 + MIT1002_00439 0.43 -2.9 481,694 + MIT1002_00439 0.49 -0.7 481,703 + MIT1002_00439 0.50 -2.1 481,703 + MIT1002_00439 0.50 -2.9 481,703 - MIT1002_00439 0.50 -0.1 481,703 - MIT1002_00439 0.50 -1.1 481,711 - MIT1002_00439 0.51 -0.6 481,739 - MIT1002_00439 0.56 -2.2 481,817 - MIT1002_00439 0.70 -3.1 481,823 + MIT1002_00439 0.71 +0.2 481,846 + MIT1002_00439 0.75 -3.8 481,885 + MIT1002_00439 0.81 -1.6 481,910 - MIT1002_00439 0.85 +0.2 481,913 + MIT1002_00439 0.86 -0.7 481,921 - MIT1002_00439 0.87 -3.0 481,924 + MIT1002_00439 0.88 -1.8 481,924 + MIT1002_00439 0.88 -1.4 481,932 - MIT1002_00439 0.89 -1.1 481,934 + MIT1002_00439 0.90 -2.8 481,952 + -2.0 481,960 - -2.7 481,986 + -2.2 481,991 + -4.9 481,991 + -1.8 481,999 + -4.0 482,053 - -0.5 483,899 - -0.3 483,934 - -1.5 483,943 + +0.3 483,943 + +1.6 483,943 + -0.4 483,943 + -0.6 483,943 + +0.1 483,951 - -0.3 483,951 - -0.1 483,951 - -0.1 483,951 - +0.0 483,984 - +0.0 484,028 - -0.4
Or see this region's nucleotide sequence