Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00412 and MIT1002_00413 are separated by 212 nucleotides MIT1002_00413 and MIT1002_00414 are separated by 228 nucleotides MIT1002_00414 and MIT1002_00415 are separated by 49 nucleotides
MIT1002_00412: MIT1002_00412 - Inner membrane protein YedI, at 444,225 to 445,148
_00412
MIT1002_00413: MIT1002_00413 - Extracellular ribonuclease precursor, at 445,361 to 447,001
_00413
MIT1002_00414: MIT1002_00414 - Bacillibactin transport regulator, at 447,230 to 447,949
_00414
MIT1002_00415: MIT1002_00415 - hypothetical protein, at 447,999 to 448,853
_00415
Position (kb) 445
446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 444.401 kb on + strand, within MIT1002_00412 at 444.440 kb on - strand, within MIT1002_00412 at 444.456 kb on - strand, within MIT1002_00412 at 444.480 kb on - strand, within MIT1002_00412 at 444.482 kb on - strand, within MIT1002_00412 at 444.510 kb on + strand, within MIT1002_00412 at 444.528 kb on - strand, within MIT1002_00412 at 444.545 kb on + strand, within MIT1002_00412 at 444.553 kb on - strand, within MIT1002_00412 at 444.553 kb on - strand, within MIT1002_00412 at 444.553 kb on - strand, within MIT1002_00412 at 444.590 kb on + strand, within MIT1002_00412 at 444.604 kb on - strand, within MIT1002_00412 at 444.604 kb on - strand, within MIT1002_00412 at 444.614 kb on + strand, within MIT1002_00412 at 444.649 kb on + strand, within MIT1002_00412 at 444.695 kb on + strand, within MIT1002_00412 at 444.702 kb on - strand, within MIT1002_00412 at 444.704 kb on - strand, within MIT1002_00412 at 444.750 kb on + strand, within MIT1002_00412 at 444.781 kb on - strand, within MIT1002_00412 at 444.781 kb on - strand, within MIT1002_00412 at 444.865 kb on - strand, within MIT1002_00412 at 444.938 kb on - strand, within MIT1002_00412 at 444.997 kb on + strand, within MIT1002_00412 at 445.006 kb on + strand, within MIT1002_00412 at 445.006 kb on + strand, within MIT1002_00412 at 445.006 kb on + strand, within MIT1002_00412 at 445.006 kb on + strand, within MIT1002_00412 at 445.006 kb on + strand, within MIT1002_00412 at 445.013 kb on - strand, within MIT1002_00412 at 445.014 kb on - strand, within MIT1002_00412 at 445.014 kb on - strand, within MIT1002_00412 at 445.014 kb on - strand, within MIT1002_00412 at 445.014 kb on - strand, within MIT1002_00412 at 445.019 kb on - strand, within MIT1002_00412 at 445.021 kb on + strand, within MIT1002_00412 at 445.024 kb on - strand, within MIT1002_00412 at 445.168 kb on + strand at 445.176 kb on - strand at 445.188 kb on - strand at 445.283 kb on + strand at 445.338 kb on + strand at 445.338 kb on + strand at 445.346 kb on + strand at 445.354 kb on - strand at 445.387 kb on + strand at 445.408 kb on + strand at 445.470 kb on - strand at 445.520 kb on + strand at 445.538 kb on + strand, within MIT1002_00413 at 445.538 kb on + strand, within MIT1002_00413 at 445.538 kb on + strand, within MIT1002_00413 at 445.546 kb on - strand, within MIT1002_00413 at 445.546 kb on - strand, within MIT1002_00413 at 445.546 kb on - strand, within MIT1002_00413 at 445.635 kb on + strand, within MIT1002_00413 at 445.643 kb on - strand, within MIT1002_00413 at 445.643 kb on - strand, within MIT1002_00413 at 445.702 kb on + strand, within MIT1002_00413 at 445.740 kb on + strand, within MIT1002_00413 at 445.744 kb on + strand, within MIT1002_00413 at 445.778 kb on - strand, within MIT1002_00413 at 445.807 kb on + strand, within MIT1002_00413 at 445.812 kb on + strand, within MIT1002_00413 at 445.885 kb on + strand, within MIT1002_00413 at 445.906 kb on + strand, within MIT1002_00413 at 445.906 kb on + strand, within MIT1002_00413 at 445.906 kb on + strand, within MIT1002_00413 at 445.906 kb on + strand, within MIT1002_00413 at 445.906 kb on + strand, within MIT1002_00413 at 445.906 kb on + strand, within MIT1002_00413 at 445.906 kb on + strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.914 kb on - strand, within MIT1002_00413 at 445.920 kb on + strand, within MIT1002_00413 at 445.925 kb on + strand, within MIT1002_00413 at 445.941 kb on - strand, within MIT1002_00413 at 446.022 kb on + strand, within MIT1002_00413 at 446.030 kb on - strand, within MIT1002_00413 at 446.093 kb on + strand, within MIT1002_00413 at 446.101 kb on - strand, within MIT1002_00413 at 446.102 kb on + strand, within MIT1002_00413 at 446.105 kb on - strand, within MIT1002_00413 at 446.110 kb on + strand, within MIT1002_00413 at 446.120 kb on - strand, within MIT1002_00413 at 446.150 kb on - strand, within MIT1002_00413 at 446.180 kb on - strand, within MIT1002_00413 at 446.181 kb on - strand, within MIT1002_00413 at 446.181 kb on - strand, within MIT1002_00413 at 446.233 kb on + strand, within MIT1002_00413 at 446.306 kb on + strand, within MIT1002_00413 at 446.325 kb on + strand, within MIT1002_00413 at 446.340 kb on + strand, within MIT1002_00413 at 446.383 kb on - strand, within MIT1002_00413 at 446.515 kb on + strand, within MIT1002_00413 at 446.532 kb on - strand, within MIT1002_00413 at 446.546 kb on - strand, within MIT1002_00413 at 446.556 kb on - strand, within MIT1002_00413 at 446.573 kb on + strand, within MIT1002_00413 at 446.573 kb on + strand, within MIT1002_00413 at 446.581 kb on - strand, within MIT1002_00413 at 446.581 kb on - strand, within MIT1002_00413 at 446.658 kb on + strand, within MIT1002_00413 at 446.703 kb on + strand, within MIT1002_00413 at 446.713 kb on + strand, within MIT1002_00413 at 446.713 kb on + strand, within MIT1002_00413 at 446.713 kb on + strand, within MIT1002_00413 at 446.721 kb on - strand, within MIT1002_00413 at 446.721 kb on - strand, within MIT1002_00413 at 446.721 kb on - strand, within MIT1002_00413 at 446.793 kb on + strand, within MIT1002_00413 at 446.830 kb on + strand, within MIT1002_00413 at 446.878 kb on - strand at 446.928 kb on - strand at 446.930 kb on + strand at 446.930 kb on - strand at 446.938 kb on - strand at 446.938 kb on - strand at 446.957 kb on + strand at 447.056 kb on + strand at 447.064 kb on - strand at 447.137 kb on + strand at 447.145 kb on - strand at 447.191 kb on + strand at 447.213 kb on + strand at 447.248 kb on - strand at 447.265 kb on + strand at 447.265 kb on + strand at 447.267 kb on + strand at 447.304 kb on + strand, within MIT1002_00414 at 447.312 kb on - strand, within MIT1002_00414 at 447.317 kb on - strand, within MIT1002_00414 at 447.385 kb on + strand, within MIT1002_00414 at 447.391 kb on - strand, within MIT1002_00414 at 447.393 kb on - strand, within MIT1002_00414 at 447.510 kb on + strand, within MIT1002_00414 at 447.518 kb on - strand, within MIT1002_00414 at 447.518 kb on - strand, within MIT1002_00414 at 447.574 kb on - strand, within MIT1002_00414 at 447.574 kb on - strand, within MIT1002_00414 at 447.664 kb on - strand, within MIT1002_00414 at 447.671 kb on - strand, within MIT1002_00414 at 447.690 kb on + strand, within MIT1002_00414 at 447.690 kb on + strand, within MIT1002_00414 at 447.690 kb on + strand, within MIT1002_00414 at 447.690 kb on + strand, within MIT1002_00414 at 447.698 kb on - strand, within MIT1002_00414 at 447.698 kb on - strand, within MIT1002_00414 at 447.698 kb on - strand, within MIT1002_00414 at 447.700 kb on + strand, within MIT1002_00414 at 447.708 kb on - strand, within MIT1002_00414 at 447.724 kb on + strand, within MIT1002_00414 at 447.739 kb on + strand, within MIT1002_00414 at 447.789 kb on - strand, within MIT1002_00414 at 447.811 kb on + strand, within MIT1002_00414 at 447.811 kb on + strand, within MIT1002_00414 at 447.850 kb on + strand, within MIT1002_00414 at 447.855 kb on - strand, within MIT1002_00414 at 447.860 kb on - strand, within MIT1002_00414 at 447.860 kb on - strand, within MIT1002_00414 at 447.860 kb on - strand, within MIT1002_00414 at 447.932 kb on - strand at 447.932 kb on - strand at 447.967 kb on - strand at 447.973 kb on - strand at 447.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 444,401 + MIT1002_00412 0.19 +2.9 444,440 - MIT1002_00412 0.23 +0.6 444,456 - MIT1002_00412 0.25 -0.3 444,480 - MIT1002_00412 0.28 +0.7 444,482 - MIT1002_00412 0.28 +0.2 444,510 + MIT1002_00412 0.31 -2.1 444,528 - MIT1002_00412 0.33 +1.3 444,545 + MIT1002_00412 0.35 -0.2 444,553 - MIT1002_00412 0.35 +2.0 444,553 - MIT1002_00412 0.35 +0.5 444,553 - MIT1002_00412 0.35 +0.4 444,590 + MIT1002_00412 0.40 +0.3 444,604 - MIT1002_00412 0.41 -0.0 444,604 - MIT1002_00412 0.41 +1.0 444,614 + MIT1002_00412 0.42 -1.8 444,649 + MIT1002_00412 0.46 +1.9 444,695 + MIT1002_00412 0.51 -0.1 444,702 - MIT1002_00412 0.52 +1.6 444,704 - MIT1002_00412 0.52 -1.1 444,750 + MIT1002_00412 0.57 +0.1 444,781 - MIT1002_00412 0.60 -0.6 444,781 - MIT1002_00412 0.60 +1.0 444,865 - MIT1002_00412 0.69 +0.4 444,938 - MIT1002_00412 0.77 -0.4 444,997 + MIT1002_00412 0.84 -0.3 445,006 + MIT1002_00412 0.85 -2.4 445,006 + MIT1002_00412 0.85 -0.1 445,006 + MIT1002_00412 0.85 -0.2 445,006 + MIT1002_00412 0.85 +1.0 445,006 + MIT1002_00412 0.85 +0.6 445,013 - MIT1002_00412 0.85 -0.8 445,014 - MIT1002_00412 0.85 -1.7 445,014 - MIT1002_00412 0.85 -0.1 445,014 - MIT1002_00412 0.85 +0.2 445,014 - MIT1002_00412 0.85 +0.0 445,019 - MIT1002_00412 0.86 -1.6 445,021 + MIT1002_00412 0.86 -0.7 445,024 - MIT1002_00412 0.86 -1.1 445,168 + +0.0 445,176 - -1.3 445,188 - +0.2 445,283 + +0.2 445,338 + +0.7 445,338 + -1.1 445,346 + -1.6 445,354 - +1.0 445,387 + -0.6 445,408 + +0.4 445,470 - +1.4 445,520 + -0.5 445,538 + MIT1002_00413 0.11 +0.1 445,538 + MIT1002_00413 0.11 +0.5 445,538 + MIT1002_00413 0.11 +0.5 445,546 - MIT1002_00413 0.11 +0.9 445,546 - MIT1002_00413 0.11 -0.3 445,546 - MIT1002_00413 0.11 -0.8 445,635 + MIT1002_00413 0.17 -0.5 445,643 - MIT1002_00413 0.17 +0.4 445,643 - MIT1002_00413 0.17 +2.2 445,702 + MIT1002_00413 0.21 +0.1 445,740 + MIT1002_00413 0.23 +1.6 445,744 + MIT1002_00413 0.23 -0.2 445,778 - MIT1002_00413 0.25 +2.3 445,807 + MIT1002_00413 0.27 -0.8 445,812 + MIT1002_00413 0.27 -0.3 445,885 + MIT1002_00413 0.32 -1.9 445,906 + MIT1002_00413 0.33 +3.1 445,906 + MIT1002_00413 0.33 -0.1 445,906 + MIT1002_00413 0.33 +0.0 445,906 + MIT1002_00413 0.33 +1.3 445,906 + MIT1002_00413 0.33 -0.3 445,906 + MIT1002_00413 0.33 +0.8 445,906 + MIT1002_00413 0.33 -0.7 445,914 - MIT1002_00413 0.34 +0.1 445,914 - MIT1002_00413 0.34 -0.1 445,914 - MIT1002_00413 0.34 -0.5 445,914 - MIT1002_00413 0.34 +0.0 445,914 - MIT1002_00413 0.34 +0.1 445,914 - MIT1002_00413 0.34 +0.3 445,914 - MIT1002_00413 0.34 +1.2 445,914 - MIT1002_00413 0.34 +0.0 445,914 - MIT1002_00413 0.34 +0.9 445,914 - MIT1002_00413 0.34 +0.3 445,914 - MIT1002_00413 0.34 +1.6 445,914 - MIT1002_00413 0.34 -2.3 445,920 + MIT1002_00413 0.34 +0.3 445,925 + MIT1002_00413 0.34 -0.1 445,941 - MIT1002_00413 0.35 +2.0 446,022 + MIT1002_00413 0.40 -0.6 446,030 - MIT1002_00413 0.41 +0.4 446,093 + MIT1002_00413 0.45 +0.0 446,101 - MIT1002_00413 0.45 -0.1 446,102 + MIT1002_00413 0.45 -0.4 446,105 - MIT1002_00413 0.45 -1.2 446,110 + MIT1002_00413 0.46 +0.5 446,120 - MIT1002_00413 0.46 -0.1 446,150 - MIT1002_00413 0.48 -0.6 446,180 - MIT1002_00413 0.50 +0.8 446,181 - MIT1002_00413 0.50 -0.1 446,181 - MIT1002_00413 0.50 -1.7 446,233 + MIT1002_00413 0.53 -2.3 446,306 + MIT1002_00413 0.58 +1.3 446,325 + MIT1002_00413 0.59 +1.4 446,340 + MIT1002_00413 0.60 -1.2 446,383 - MIT1002_00413 0.62 -0.2 446,515 + MIT1002_00413 0.70 -1.5 446,532 - MIT1002_00413 0.71 +0.8 446,546 - MIT1002_00413 0.72 +1.1 446,556 - MIT1002_00413 0.73 +0.9 446,573 + MIT1002_00413 0.74 -0.4 446,573 + MIT1002_00413 0.74 -0.5 446,581 - MIT1002_00413 0.74 +2.5 446,581 - MIT1002_00413 0.74 +0.1 446,658 + MIT1002_00413 0.79 -0.1 446,703 + MIT1002_00413 0.82 -0.4 446,713 + MIT1002_00413 0.82 +0.3 446,713 + MIT1002_00413 0.82 -1.2 446,713 + MIT1002_00413 0.82 +1.1 446,721 - MIT1002_00413 0.83 -1.3 446,721 - MIT1002_00413 0.83 +11.0 446,721 - MIT1002_00413 0.83 +0.4 446,793 + MIT1002_00413 0.87 +0.6 446,830 + MIT1002_00413 0.90 -0.7 446,878 - -1.8 446,928 - -1.0 446,930 + -0.8 446,930 - -2.3 446,938 - -1.1 446,938 - -1.4 446,957 + -2.7 447,056 + -0.4 447,064 - -1.2 447,137 + -0.6 447,145 - +0.6 447,191 + -1.0 447,213 + +1.0 447,248 - -1.0 447,265 + +1.0 447,265 + +0.1 447,267 + -2.3 447,304 + MIT1002_00414 0.10 +1.0 447,312 - MIT1002_00414 0.11 -1.9 447,317 - MIT1002_00414 0.12 +0.1 447,385 + MIT1002_00414 0.22 -0.5 447,391 - MIT1002_00414 0.22 -0.6 447,393 - MIT1002_00414 0.23 -0.7 447,510 + MIT1002_00414 0.39 -0.6 447,518 - MIT1002_00414 0.40 +0.8 447,518 - MIT1002_00414 0.40 -0.4 447,574 - MIT1002_00414 0.48 +1.0 447,574 - MIT1002_00414 0.48 +2.0 447,664 - MIT1002_00414 0.60 -1.2 447,671 - MIT1002_00414 0.61 +1.9 447,690 + MIT1002_00414 0.64 -0.3 447,690 + MIT1002_00414 0.64 -0.2 447,690 + MIT1002_00414 0.64 -1.1 447,690 + MIT1002_00414 0.64 -1.4 447,698 - MIT1002_00414 0.65 -0.6 447,698 - MIT1002_00414 0.65 -1.3 447,698 - MIT1002_00414 0.65 +0.4 447,700 + MIT1002_00414 0.65 -0.1 447,708 - MIT1002_00414 0.66 -1.1 447,724 + MIT1002_00414 0.69 -1.0 447,739 + MIT1002_00414 0.71 +1.3 447,789 - MIT1002_00414 0.78 +0.1 447,811 + MIT1002_00414 0.81 -0.3 447,811 + MIT1002_00414 0.81 -0.4 447,850 + MIT1002_00414 0.86 -1.0 447,855 - MIT1002_00414 0.87 -1.9 447,860 - MIT1002_00414 0.88 +1.9 447,860 - MIT1002_00414 0.88 +0.8 447,860 - MIT1002_00414 0.88 -0.6 447,932 - -1.8 447,932 - -0.7 447,967 - -0.7 447,973 - +0.4 447,974 - +0.7
Or see this region's nucleotide sequence