Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00406

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00405 and MIT1002_00406 are separated by 210 nucleotidesMIT1002_00406 and MIT1002_00407 are separated by 194 nucleotides MIT1002_00405: MIT1002_00405 - 2'-5'-RNA ligase, at 434,796 to 435,449 _00405 MIT1002_00406: MIT1002_00406 - ATP-dependent RNA helicase HrpB, at 435,660 to 438,302 _00406 MIT1002_00407: MIT1002_00407 - Nickel uptake substrate-specific transmembrane region, at 438,497 to 439,321 _00407 Position (kb) 435 436 437 438 439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 434.664 kb on + strandat 434.690 kb on - strandat 434.690 kb on - strandat 434.691 kb on - strandat 434.691 kb on - strandat 434.719 kb on + strandat 434.725 kb on + strandat 434.733 kb on - strandat 434.771 kb on + strandat 434.781 kb on + strandat 434.789 kb on - strandat 434.822 kb on + strandat 434.836 kb on - strandat 434.854 kb on + strandat 434.854 kb on + strandat 434.862 kb on - strand, within MIT1002_00405at 434.872 kb on + strand, within MIT1002_00405at 434.872 kb on + strand, within MIT1002_00405at 434.872 kb on + strand, within MIT1002_00405at 434.872 kb on + strand, within MIT1002_00405at 434.880 kb on - strand, within MIT1002_00405at 434.884 kb on - strand, within MIT1002_00405at 434.884 kb on - strand, within MIT1002_00405at 434.885 kb on - strand, within MIT1002_00405at 434.933 kb on + strand, within MIT1002_00405at 434.939 kb on + strand, within MIT1002_00405at 434.941 kb on - strand, within MIT1002_00405at 434.954 kb on + strand, within MIT1002_00405at 435.009 kb on - strand, within MIT1002_00405at 435.023 kb on - strand, within MIT1002_00405at 435.080 kb on + strand, within MIT1002_00405at 435.140 kb on + strand, within MIT1002_00405at 435.146 kb on + strand, within MIT1002_00405at 435.165 kb on + strand, within MIT1002_00405at 435.189 kb on + strand, within MIT1002_00405at 435.191 kb on + strand, within MIT1002_00405at 435.231 kb on + strand, within MIT1002_00405at 435.265 kb on + strand, within MIT1002_00405at 435.265 kb on + strand, within MIT1002_00405at 435.267 kb on + strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.367 kb on + strand, within MIT1002_00405at 435.433 kb on - strandat 435.433 kb on - strandat 435.451 kb on + strandat 435.451 kb on + strandat 435.452 kb on - strandat 435.459 kb on - strandat 435.506 kb on + strandat 435.514 kb on - strandat 435.555 kb on + strandat 435.598 kb on - strandat 435.611 kb on - strandat 435.616 kb on - strandat 435.621 kb on + strandat 435.624 kb on - strandat 435.629 kb on - strandat 435.629 kb on - strandat 435.654 kb on + strandat 435.662 kb on - strandat 435.791 kb on + strandat 435.799 kb on - strandat 435.836 kb on - strandat 435.836 kb on - strandat 435.863 kb on + strandat 435.871 kb on - strandat 435.972 kb on + strand, within MIT1002_00406at 435.980 kb on - strand, within MIT1002_00406at 435.997 kb on + strand, within MIT1002_00406at 436.005 kb on - strand, within MIT1002_00406at 436.005 kb on - strand, within MIT1002_00406at 436.051 kb on + strand, within MIT1002_00406at 436.069 kb on + strand, within MIT1002_00406at 436.093 kb on + strand, within MIT1002_00406at 436.130 kb on - strand, within MIT1002_00406at 436.137 kb on + strand, within MIT1002_00406at 436.145 kb on - strand, within MIT1002_00406at 436.145 kb on - strand, within MIT1002_00406at 436.240 kb on + strand, within MIT1002_00406at 436.288 kb on + strand, within MIT1002_00406at 436.305 kb on + strand, within MIT1002_00406at 436.360 kb on - strand, within MIT1002_00406at 436.360 kb on - strand, within MIT1002_00406at 436.415 kb on + strand, within MIT1002_00406at 436.423 kb on - strand, within MIT1002_00406at 436.423 kb on - strand, within MIT1002_00406at 436.423 kb on - strand, within MIT1002_00406at 436.430 kb on + strand, within MIT1002_00406at 436.430 kb on + strand, within MIT1002_00406at 436.438 kb on - strand, within MIT1002_00406at 436.438 kb on - strand, within MIT1002_00406at 436.438 kb on - strand, within MIT1002_00406at 436.459 kb on + strand, within MIT1002_00406at 436.523 kb on + strand, within MIT1002_00406at 436.531 kb on + strand, within MIT1002_00406at 436.567 kb on - strand, within MIT1002_00406at 436.577 kb on - strand, within MIT1002_00406at 436.683 kb on + strand, within MIT1002_00406at 436.684 kb on - strand, within MIT1002_00406at 436.773 kb on + strand, within MIT1002_00406at 436.774 kb on + strand, within MIT1002_00406at 436.781 kb on - strand, within MIT1002_00406at 436.781 kb on - strand, within MIT1002_00406at 436.781 kb on - strand, within MIT1002_00406at 436.820 kb on + strand, within MIT1002_00406at 436.828 kb on - strand, within MIT1002_00406at 436.828 kb on - strand, within MIT1002_00406at 436.828 kb on - strand, within MIT1002_00406at 436.828 kb on - strand, within MIT1002_00406at 436.865 kb on + strand, within MIT1002_00406at 436.865 kb on + strand, within MIT1002_00406at 436.865 kb on + strand, within MIT1002_00406at 436.865 kb on + strand, within MIT1002_00406at 436.865 kb on + strand, within MIT1002_00406at 436.865 kb on + strand, within MIT1002_00406at 436.873 kb on - strand, within MIT1002_00406at 436.873 kb on - strand, within MIT1002_00406at 436.873 kb on - strand, within MIT1002_00406at 436.886 kb on + strand, within MIT1002_00406at 436.896 kb on - strand, within MIT1002_00406at 436.896 kb on - strand, within MIT1002_00406at 436.896 kb on - strand, within MIT1002_00406at 436.896 kb on - strand, within MIT1002_00406at 436.898 kb on + strand, within MIT1002_00406at 436.898 kb on + strand, within MIT1002_00406at 436.906 kb on - strand, within MIT1002_00406at 436.969 kb on + strand, within MIT1002_00406at 436.979 kb on + strand, within MIT1002_00406at 436.979 kb on + strand, within MIT1002_00406at 437.087 kb on + strand, within MIT1002_00406at 437.087 kb on + strand, within MIT1002_00406at 437.087 kb on + strand, within MIT1002_00406at 437.095 kb on - strand, within MIT1002_00406at 437.124 kb on - strand, within MIT1002_00406at 437.172 kb on + strand, within MIT1002_00406at 437.180 kb on + strand, within MIT1002_00406at 437.215 kb on + strand, within MIT1002_00406at 437.215 kb on + strand, within MIT1002_00406at 437.215 kb on + strand, within MIT1002_00406at 437.215 kb on + strand, within MIT1002_00406at 437.223 kb on - strand, within MIT1002_00406at 437.263 kb on - strand, within MIT1002_00406at 437.315 kb on + strand, within MIT1002_00406at 437.315 kb on + strand, within MIT1002_00406at 437.315 kb on + strand, within MIT1002_00406at 437.315 kb on + strand, within MIT1002_00406at 437.323 kb on - strand, within MIT1002_00406at 437.323 kb on - strand, within MIT1002_00406at 437.323 kb on - strand, within MIT1002_00406at 437.323 kb on - strand, within MIT1002_00406at 437.323 kb on - strand, within MIT1002_00406at 437.323 kb on - strand, within MIT1002_00406at 437.323 kb on - strand, within MIT1002_00406at 437.359 kb on + strand, within MIT1002_00406at 437.367 kb on - strand, within MIT1002_00406at 437.367 kb on - strand, within MIT1002_00406at 437.369 kb on - strand, within MIT1002_00406at 437.373 kb on + strand, within MIT1002_00406at 437.374 kb on - strand, within MIT1002_00406at 437.374 kb on - strand, within MIT1002_00406at 437.419 kb on + strand, within MIT1002_00406at 437.514 kb on - strand, within MIT1002_00406at 437.515 kb on + strand, within MIT1002_00406at 437.547 kb on + strand, within MIT1002_00406at 437.550 kb on - strand, within MIT1002_00406at 437.557 kb on + strand, within MIT1002_00406at 437.563 kb on - strand, within MIT1002_00406at 437.565 kb on - strand, within MIT1002_00406at 437.566 kb on + strand, within MIT1002_00406at 437.703 kb on - strand, within MIT1002_00406at 437.731 kb on - strand, within MIT1002_00406at 437.739 kb on + strand, within MIT1002_00406at 437.792 kb on + strand, within MIT1002_00406at 437.849 kb on - strand, within MIT1002_00406at 437.861 kb on - strand, within MIT1002_00406at 437.988 kb on + strand, within MIT1002_00406at 437.997 kb on + strand, within MIT1002_00406at 437.997 kb on + strand, within MIT1002_00406at 438.031 kb on - strand, within MIT1002_00406at 438.079 kb on - strandat 438.090 kb on + strandat 438.090 kb on + strandat 438.137 kb on + strandat 438.146 kb on + strandat 438.154 kb on - strandat 438.196 kb on + strandat 438.235 kb on - strandat 438.299 kb on + strandat 438.321 kb on - strandat 438.428 kb on + strandat 438.466 kb on - strandat 438.483 kb on + strandat 438.622 kb on + strand, within MIT1002_00407at 438.640 kb on + strand, within MIT1002_00407at 438.653 kb on + strand, within MIT1002_00407at 438.661 kb on - strand, within MIT1002_00407at 438.661 kb on - strand, within MIT1002_00407at 438.661 kb on - strand, within MIT1002_00407at 438.670 kb on + strand, within MIT1002_00407at 438.670 kb on + strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.699 kb on + strand, within MIT1002_00407at 438.736 kb on + strand, within MIT1002_00407at 438.737 kb on + strand, within MIT1002_00407at 438.903 kb on - strand, within MIT1002_00407at 438.932 kb on + strand, within MIT1002_00407at 438.940 kb on + strand, within MIT1002_00407at 438.965 kb on - strand, within MIT1002_00407at 439.047 kb on - strand, within MIT1002_00407at 439.102 kb on - strand, within MIT1002_00407at 439.174 kb on + strand, within MIT1002_00407

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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434,664 + -1.1
434,690 - -1.0
434,690 - +1.0
434,691 - +1.7
434,691 - -0.4
434,719 + -1.5
434,725 + -0.3
434,733 - -0.4
434,771 + -0.6
434,781 + -1.1
434,789 - -0.6
434,822 + +0.2
434,836 - -0.1
434,854 + -0.5
434,854 + -0.3
434,862 - MIT1002_00405 0.10 -0.3
434,872 + MIT1002_00405 0.12 +3.6
434,872 + MIT1002_00405 0.12 -0.6
434,872 + MIT1002_00405 0.12 -2.4
434,872 + MIT1002_00405 0.12 -1.2
434,880 - MIT1002_00405 0.13 +1.0
434,884 - MIT1002_00405 0.13 -0.1
434,884 - MIT1002_00405 0.13 -0.1
434,885 - MIT1002_00405 0.14 -1.0
434,933 + MIT1002_00405 0.21 -0.3
434,939 + MIT1002_00405 0.22 +0.3
434,941 - MIT1002_00405 0.22 -0.4
434,954 + MIT1002_00405 0.24 +2.0
435,009 - MIT1002_00405 0.33 -1.3
435,023 - MIT1002_00405 0.35 +0.9
435,080 + MIT1002_00405 0.43 -0.2
435,140 + MIT1002_00405 0.53 -1.5
435,146 + MIT1002_00405 0.54 +1.0
435,165 + MIT1002_00405 0.56 +1.6
435,189 + MIT1002_00405 0.60 +1.2
435,191 + MIT1002_00405 0.60 +0.4
435,231 + MIT1002_00405 0.67 +0.5
435,265 + MIT1002_00405 0.72 +2.0
435,265 + MIT1002_00405 0.72 +0.4
435,267 + MIT1002_00405 0.72 -0.5
435,273 - MIT1002_00405 0.73 -0.0
435,273 - MIT1002_00405 0.73 -1.4
435,273 - MIT1002_00405 0.73 -0.2
435,273 - MIT1002_00405 0.73 +1.5
435,273 - MIT1002_00405 0.73 -0.3
435,367 + MIT1002_00405 0.87 +1.0
435,433 - -1.4
435,433 - +0.6
435,451 + -1.5
435,451 + -0.7
435,452 - +0.4
435,459 - -0.6
435,506 + -0.5
435,514 - -1.0
435,555 + +1.7
435,598 - +1.3
435,611 - -1.2
435,616 - +1.0
435,621 + -0.5
435,624 - -1.2
435,629 - -1.3
435,629 - -2.2
435,654 + -0.5
435,662 - -0.3
435,791 + +1.9
435,799 - +0.4
435,836 - -0.7
435,836 - -0.4
435,863 + -0.3
435,871 - -1.4
435,972 + MIT1002_00406 0.12 +0.3
435,980 - MIT1002_00406 0.12 +1.8
435,997 + MIT1002_00406 0.13 +0.6
436,005 - MIT1002_00406 0.13 -0.2
436,005 - MIT1002_00406 0.13 +0.4
436,051 + MIT1002_00406 0.15 +0.2
436,069 + MIT1002_00406 0.15 +0.4
436,093 + MIT1002_00406 0.16 +0.6
436,130 - MIT1002_00406 0.18 -1.5
436,137 + MIT1002_00406 0.18 +0.4
436,145 - MIT1002_00406 0.18 -0.7
436,145 - MIT1002_00406 0.18 +0.3
436,240 + MIT1002_00406 0.22 +0.6
436,288 + MIT1002_00406 0.24 +0.4
436,305 + MIT1002_00406 0.24 -0.4
436,360 - MIT1002_00406 0.26 +2.1
436,360 - MIT1002_00406 0.26 -1.1
436,415 + MIT1002_00406 0.29 -1.3
436,423 - MIT1002_00406 0.29 -1.8
436,423 - MIT1002_00406 0.29 -0.4
436,423 - MIT1002_00406 0.29 +1.9
436,430 + MIT1002_00406 0.29 +1.3
436,430 + MIT1002_00406 0.29 +2.1
436,438 - MIT1002_00406 0.29 -1.4
436,438 - MIT1002_00406 0.29 -2.1
436,438 - MIT1002_00406 0.29 +0.2
436,459 + MIT1002_00406 0.30 +0.3
436,523 + MIT1002_00406 0.33 +1.0
436,531 + MIT1002_00406 0.33 -0.6
436,567 - MIT1002_00406 0.34 +1.6
436,577 - MIT1002_00406 0.35 +0.2
436,683 + MIT1002_00406 0.39 +0.2
436,684 - MIT1002_00406 0.39 -0.3
436,773 + MIT1002_00406 0.42 -1.0
436,774 + MIT1002_00406 0.42 +1.9
436,781 - MIT1002_00406 0.42 -1.4
436,781 - MIT1002_00406 0.42 +0.5
436,781 - MIT1002_00406 0.42 -0.8
436,820 + MIT1002_00406 0.44 +1.6
436,828 - MIT1002_00406 0.44 +0.0
436,828 - MIT1002_00406 0.44 -2.7
436,828 - MIT1002_00406 0.44 +1.3
436,828 - MIT1002_00406 0.44 -1.3
436,865 + MIT1002_00406 0.46 +1.0
436,865 + MIT1002_00406 0.46 +1.0
436,865 + MIT1002_00406 0.46 -2.0
436,865 + MIT1002_00406 0.46 +1.7
436,865 + MIT1002_00406 0.46 +1.7
436,865 + MIT1002_00406 0.46 +0.4
436,873 - MIT1002_00406 0.46 -0.0
436,873 - MIT1002_00406 0.46 -0.0
436,873 - MIT1002_00406 0.46 +0.3
436,886 + MIT1002_00406 0.46 -0.2
436,896 - MIT1002_00406 0.47 +1.4
436,896 - MIT1002_00406 0.47 -1.0
436,896 - MIT1002_00406 0.47 -0.6
436,896 - MIT1002_00406 0.47 -1.7
436,898 + MIT1002_00406 0.47 -1.1
436,898 + MIT1002_00406 0.47 +1.3
436,906 - MIT1002_00406 0.47 -0.1
436,969 + MIT1002_00406 0.50 +0.4
436,979 + MIT1002_00406 0.50 -1.0
436,979 + MIT1002_00406 0.50 +0.0
437,087 + MIT1002_00406 0.54 -0.5
437,087 + MIT1002_00406 0.54 +0.8
437,087 + MIT1002_00406 0.54 +0.6
437,095 - MIT1002_00406 0.54 +0.3
437,124 - MIT1002_00406 0.55 -1.1
437,172 + MIT1002_00406 0.57 -0.9
437,180 + MIT1002_00406 0.58 +0.8
437,215 + MIT1002_00406 0.59 -0.7
437,215 + MIT1002_00406 0.59 -1.2
437,215 + MIT1002_00406 0.59 +0.0
437,215 + MIT1002_00406 0.59 +1.9
437,223 - MIT1002_00406 0.59 +0.0
437,263 - MIT1002_00406 0.61 -0.1
437,315 + MIT1002_00406 0.63 -0.9
437,315 + MIT1002_00406 0.63 -0.5
437,315 + MIT1002_00406 0.63 +0.1
437,315 + MIT1002_00406 0.63 -1.1
437,323 - MIT1002_00406 0.63 -2.8
437,323 - MIT1002_00406 0.63 +0.0
437,323 - MIT1002_00406 0.63 -0.3
437,323 - MIT1002_00406 0.63 +0.4
437,323 - MIT1002_00406 0.63 -0.2
437,323 - MIT1002_00406 0.63 -0.7
437,323 - MIT1002_00406 0.63 +0.3
437,359 + MIT1002_00406 0.64 -0.8
437,367 - MIT1002_00406 0.65 +0.4
437,367 - MIT1002_00406 0.65 +1.1
437,369 - MIT1002_00406 0.65 -0.7
437,373 + MIT1002_00406 0.65 -0.8
437,374 - MIT1002_00406 0.65 +1.3
437,374 - MIT1002_00406 0.65 -0.9
437,419 + MIT1002_00406 0.67 -2.2
437,514 - MIT1002_00406 0.70 -0.9
437,515 + MIT1002_00406 0.70 -0.1
437,547 + MIT1002_00406 0.71 +0.3
437,550 - MIT1002_00406 0.72 +0.4
437,557 + MIT1002_00406 0.72 +2.8
437,563 - MIT1002_00406 0.72 -0.4
437,565 - MIT1002_00406 0.72 +0.4
437,566 + MIT1002_00406 0.72 -1.8
437,703 - MIT1002_00406 0.77 +0.9
437,731 - MIT1002_00406 0.78 -0.2
437,739 + MIT1002_00406 0.79 +0.5
437,792 + MIT1002_00406 0.81 +0.5
437,849 - MIT1002_00406 0.83 -1.3
437,861 - MIT1002_00406 0.83 -0.6
437,988 + MIT1002_00406 0.88 +0.6
437,997 + MIT1002_00406 0.88 -0.8
437,997 + MIT1002_00406 0.88 -2.0
438,031 - MIT1002_00406 0.90 +0.0
438,079 - +2.0
438,090 + -0.3
438,090 + -0.1
438,137 + +0.4
438,146 + -1.2
438,154 - +1.1
438,196 + -0.4
438,235 - -1.0
438,299 + -0.1
438,321 - -0.6
438,428 + +1.8
438,466 - +0.5
438,483 + -0.3
438,622 + MIT1002_00407 0.15 +1.0
438,640 + MIT1002_00407 0.17 +0.7
438,653 + MIT1002_00407 0.19 -0.4
438,661 - MIT1002_00407 0.20 -1.9
438,661 - MIT1002_00407 0.20 +1.8
438,661 - MIT1002_00407 0.20 +0.6
438,670 + MIT1002_00407 0.21 +1.6
438,670 + MIT1002_00407 0.21 -0.4
438,678 - MIT1002_00407 0.22 +0.4
438,678 - MIT1002_00407 0.22 +1.7
438,678 - MIT1002_00407 0.22 +2.0
438,678 - MIT1002_00407 0.22 +0.1
438,678 - MIT1002_00407 0.22 +0.8
438,678 - MIT1002_00407 0.22 -1.4
438,699 + MIT1002_00407 0.24 +0.1
438,736 + MIT1002_00407 0.29 -0.7
438,737 + MIT1002_00407 0.29 +1.4
438,903 - MIT1002_00407 0.49 -3.2
438,932 + MIT1002_00407 0.53 -0.6
438,940 + MIT1002_00407 0.54 +0.8
438,965 - MIT1002_00407 0.57 -0.1
439,047 - MIT1002_00407 0.67 -0.5
439,102 - MIT1002_00407 0.73 +0.3
439,174 + MIT1002_00407 0.82 +0.1

Or see this region's nucleotide sequence