Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00371 and MIT1002_00372 are separated by 615 nucleotides MIT1002_00372 and MIT1002_00373 are separated by 83 nucleotides MIT1002_00373 and MIT1002_00374 are separated by 37 nucleotides MIT1002_00374 and MIT1002_00375 are separated by 355 nucleotides
MIT1002_00371: MIT1002_00371 - Alcohol dehydrogenase 2, at 399,978 to 401,126
_00371
MIT1002_00372: MIT1002_00372 - 16S ribosomal RNA, at 401,742 to 403,262
_00372
MIT1002_00373: MIT1002_00373 - tRNA-Ala, at 403,346 to 403,421
_00373
MIT1002_00374: MIT1002_00374 - tRNA-Ile, at 403,459 to 403,535
_00374
MIT1002_00375: MIT1002_00375 - 23S ribosomal RNA, at 403,891 to 406,764
_00375
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.796 kb on + strand, within MIT1002_00371 at 400.817 kb on + strand, within MIT1002_00371 at 400.835 kb on - strand, within MIT1002_00371 at 400.867 kb on + strand, within MIT1002_00371 at 400.875 kb on - strand, within MIT1002_00371 at 400.885 kb on - strand, within MIT1002_00371 at 400.923 kb on + strand, within MIT1002_00371 at 400.961 kb on + strand, within MIT1002_00371 at 400.976 kb on - strand, within MIT1002_00371 at 401.049 kb on - strand at 401.089 kb on - strand at 401.096 kb on + strand at 401.143 kb on - strand at 401.166 kb on - strand at 401.180 kb on + strand at 401.501 kb on + strand at 401.519 kb on - strand at 401.553 kb on + strand at 401.561 kb on - strand at 401.621 kb on - strand at 401.779 kb on + strand at 401.780 kb on + strand at 401.813 kb on + strand at 401.824 kb on + strand at 401.900 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 401.985 kb on + strand, within MIT1002_00372 at 403.260 kb on + strand at 403.263 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 400,796 + MIT1002_00371 0.71 -0.6 400,817 + MIT1002_00371 0.73 -1.0 400,835 - MIT1002_00371 0.75 +0.6 400,867 + MIT1002_00371 0.77 -1.8 400,875 - MIT1002_00371 0.78 -1.3 400,885 - MIT1002_00371 0.79 -1.4 400,923 + MIT1002_00371 0.82 +1.4 400,961 + MIT1002_00371 0.86 -1.6 400,976 - MIT1002_00371 0.87 -0.8 401,049 - +1.0 401,089 - -0.6 401,096 + +0.6 401,143 - +2.6 401,166 - -0.8 401,180 + +1.3 401,501 + -0.5 401,519 - +0.9 401,553 + -1.6 401,561 - +1.4 401,621 - -1.6 401,779 + -2.2 401,780 + +2.0 401,813 + -2.6 401,824 + +0.8 401,900 + MIT1002_00372 0.10 -0.0 401,985 + MIT1002_00372 0.16 +0.2 401,985 + MIT1002_00372 0.16 +0.7 401,985 + MIT1002_00372 0.16 +1.0 401,985 + MIT1002_00372 0.16 +2.3 401,985 + MIT1002_00372 0.16 +0.5 401,985 + MIT1002_00372 0.16 +0.4 403,260 + -0.4 403,263 + +0.5
Or see this region's nucleotide sequence