Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00355 and MIT1002_00356 are separated by 296 nucleotides MIT1002_00356 and MIT1002_00357 are separated by 92 nucleotides MIT1002_00357 and MIT1002_00358 are separated by 1 nucleotides
MIT1002_00355: MIT1002_00355 - putative permease, DMT superfamily, at 382,829 to 383,722
_00355
MIT1002_00356: MIT1002_00356 - phosphoglycolate phosphatase, at 384,019 to 384,522
_00356
MIT1002_00357: MIT1002_00357 - hypothetical protein, at 384,615 to 385,502
_00357
MIT1002_00358: MIT1002_00358 - hypothetical protein, at 385,504 to 387,405
_00358
Position (kb) 384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 383.671 kb on - strand at 383.671 kb on - strand at 383.692 kb on + strand at 383.699 kb on + strand at 383.699 kb on + strand at 383.702 kb on - strand at 383.705 kb on - strand at 383.707 kb on - strand at 383.707 kb on - strand at 383.802 kb on + strand at 383.803 kb on - strand at 383.810 kb on - strand at 383.810 kb on - strand at 383.812 kb on + strand at 383.866 kb on - strand at 383.880 kb on + strand at 383.880 kb on + strand at 383.928 kb on + strand at 383.933 kb on + strand at 383.933 kb on + strand at 384.008 kb on + strand at 384.099 kb on - strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.111 kb on + strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.133 kb on + strand, within MIT1002_00356 at 384.141 kb on - strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.231 kb on + strand, within MIT1002_00356 at 384.276 kb on + strand, within MIT1002_00356 at 384.277 kb on + strand, within MIT1002_00356 at 384.323 kb on + strand, within MIT1002_00356 at 384.323 kb on + strand, within MIT1002_00356 at 384.323 kb on + strand, within MIT1002_00356 at 384.334 kb on + strand, within MIT1002_00356 at 384.342 kb on + strand, within MIT1002_00356 at 384.384 kb on + strand, within MIT1002_00356 at 384.392 kb on - strand, within MIT1002_00356 at 384.401 kb on + strand, within MIT1002_00356 at 384.430 kb on - strand, within MIT1002_00356 at 384.457 kb on - strand, within MIT1002_00356 at 384.526 kb on + strand at 384.579 kb on - strand at 384.650 kb on - strand at 384.661 kb on - strand at 384.661 kb on - strand at 384.682 kb on + strand at 384.695 kb on - strand at 384.788 kb on + strand, within MIT1002_00357 at 384.856 kb on - strand, within MIT1002_00357 at 384.858 kb on + strand, within MIT1002_00357 at 384.870 kb on - strand, within MIT1002_00357 at 384.908 kb on + strand, within MIT1002_00357 at 384.913 kb on + strand, within MIT1002_00357 at 384.913 kb on + strand, within MIT1002_00357 at 384.914 kb on + strand, within MIT1002_00357 at 384.914 kb on + strand, within MIT1002_00357 at 384.914 kb on + strand, within MIT1002_00357 at 384.914 kb on + strand, within MIT1002_00357 at 384.921 kb on - strand, within MIT1002_00357 at 384.921 kb on - strand, within MIT1002_00357 at 384.921 kb on - strand, within MIT1002_00357 at 384.921 kb on - strand, within MIT1002_00357 at 384.922 kb on - strand, within MIT1002_00357 at 384.922 kb on - strand, within MIT1002_00357 at 384.922 kb on - strand, within MIT1002_00357 at 384.922 kb on - strand, within MIT1002_00357 at 384.922 kb on - strand, within MIT1002_00357 at 384.929 kb on + strand, within MIT1002_00357 at 384.996 kb on + strand, within MIT1002_00357 at 385.030 kb on + strand, within MIT1002_00357 at 385.038 kb on - strand, within MIT1002_00357 at 385.102 kb on - strand, within MIT1002_00357 at 385.105 kb on - strand, within MIT1002_00357 at 385.138 kb on - strand, within MIT1002_00357 at 385.153 kb on + strand, within MIT1002_00357 at 385.161 kb on - strand, within MIT1002_00357 at 385.219 kb on + strand, within MIT1002_00357 at 385.261 kb on - strand, within MIT1002_00357 at 385.333 kb on + strand, within MIT1002_00357 at 385.333 kb on + strand, within MIT1002_00357 at 385.333 kb on + strand, within MIT1002_00357 at 385.333 kb on - strand, within MIT1002_00357 at 385.334 kb on - strand, within MIT1002_00357 at 385.341 kb on - strand, within MIT1002_00357 at 385.341 kb on - strand, within MIT1002_00357 at 385.341 kb on - strand, within MIT1002_00357 at 385.341 kb on - strand, within MIT1002_00357 at 385.341 kb on - strand, within MIT1002_00357 at 385.341 kb on - strand, within MIT1002_00357 at 385.358 kb on - strand, within MIT1002_00357 at 385.422 kb on - strand at 385.422 kb on - strand at 385.435 kb on + strand at 385.472 kb on + strand at 385.522 kb on - strand at 385.522 kb on - strand at 385.550 kb on - strand at 385.553 kb on - strand at 385.553 kb on - strand at 385.553 kb on - strand at 385.553 kb on - strand at 385.639 kb on - strand at 385.643 kb on - strand at 385.657 kb on + strand at 385.662 kb on + strand at 385.664 kb on - strand at 385.664 kb on - strand at 385.670 kb on - strand at 385.677 kb on - strand at 385.677 kb on - strand at 385.706 kb on + strand, within MIT1002_00358 at 385.706 kb on + strand, within MIT1002_00358 at 385.706 kb on + strand, within MIT1002_00358 at 385.714 kb on - strand, within MIT1002_00358 at 385.714 kb on - strand, within MIT1002_00358 at 385.714 kb on - strand, within MIT1002_00358 at 385.728 kb on - strand, within MIT1002_00358 at 385.934 kb on - strand, within MIT1002_00358 at 385.952 kb on + strand, within MIT1002_00358 at 385.991 kb on + strand, within MIT1002_00358 at 385.999 kb on - strand, within MIT1002_00358 at 385.999 kb on - strand, within MIT1002_00358 at 386.051 kb on + strand, within MIT1002_00358 at 386.059 kb on - strand, within MIT1002_00358 at 386.059 kb on - strand, within MIT1002_00358 at 386.077 kb on + strand, within MIT1002_00358 at 386.107 kb on - strand, within MIT1002_00358 at 386.107 kb on - strand, within MIT1002_00358 at 386.193 kb on - strand, within MIT1002_00358 at 386.193 kb on - strand, within MIT1002_00358 at 386.193 kb on - strand, within MIT1002_00358 at 386.193 kb on - strand, within MIT1002_00358 at 386.197 kb on + strand, within MIT1002_00358 at 386.232 kb on + strand, within MIT1002_00358 at 386.374 kb on - strand, within MIT1002_00358 at 386.374 kb on - strand, within MIT1002_00358 at 386.379 kb on - strand, within MIT1002_00358 at 386.388 kb on + strand, within MIT1002_00358 at 386.461 kb on + strand, within MIT1002_00358 at 386.469 kb on - strand, within MIT1002_00358 at 386.472 kb on + strand, within MIT1002_00358 at 386.480 kb on - strand, within MIT1002_00358
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 383,671 - -0.1 383,671 - -0.9 383,692 + +0.2 383,699 + -0.1 383,699 + +0.8 383,702 - +1.3 383,705 - -0.2 383,707 - -1.3 383,707 - +0.0 383,802 + -0.2 383,803 - -1.6 383,810 - -0.3 383,810 - +0.1 383,812 + -1.2 383,866 - +0.6 383,880 + -0.6 383,880 + +1.1 383,928 + -1.7 383,933 + -0.3 383,933 + +1.0 384,008 + +0.6 384,099 - MIT1002_00356 0.16 -1.0 384,106 + MIT1002_00356 0.17 -0.6 384,106 + MIT1002_00356 0.17 -0.4 384,106 + MIT1002_00356 0.17 -1.4 384,106 + MIT1002_00356 0.17 -1.1 384,106 + MIT1002_00356 0.17 -1.2 384,106 + MIT1002_00356 0.17 -2.1 384,106 + MIT1002_00356 0.17 -1.6 384,106 + MIT1002_00356 0.17 +0.2 384,106 + MIT1002_00356 0.17 +0.0 384,106 + MIT1002_00356 0.17 -3.0 384,111 + MIT1002_00356 0.18 -1.3 384,114 - MIT1002_00356 0.19 -1.0 384,114 - MIT1002_00356 0.19 -1.0 384,114 - MIT1002_00356 0.19 +2.0 384,114 - MIT1002_00356 0.19 -0.7 384,114 - MIT1002_00356 0.19 +1.4 384,114 - MIT1002_00356 0.19 -0.4 384,114 - MIT1002_00356 0.19 -0.3 384,114 - MIT1002_00356 0.19 +0.5 384,114 - MIT1002_00356 0.19 +1.4 384,114 - MIT1002_00356 0.19 -1.2 384,133 + MIT1002_00356 0.23 -2.0 384,141 - MIT1002_00356 0.24 +0.6 384,151 + MIT1002_00356 0.26 -0.8 384,151 + MIT1002_00356 0.26 -0.1 384,151 + MIT1002_00356 0.26 +0.8 384,151 + MIT1002_00356 0.26 -0.0 384,151 + MIT1002_00356 0.26 +1.8 384,151 + MIT1002_00356 0.26 +0.6 384,151 + MIT1002_00356 0.26 -1.5 384,159 - MIT1002_00356 0.28 +0.8 384,159 - MIT1002_00356 0.28 -1.6 384,159 - MIT1002_00356 0.28 +0.1 384,159 - MIT1002_00356 0.28 +0.1 384,159 - MIT1002_00356 0.28 +1.3 384,159 - MIT1002_00356 0.28 -0.7 384,159 - MIT1002_00356 0.28 -0.7 384,159 - MIT1002_00356 0.28 +0.9 384,231 + MIT1002_00356 0.42 +0.5 384,276 + MIT1002_00356 0.51 +1.2 384,277 + MIT1002_00356 0.51 -0.1 384,323 + MIT1002_00356 0.60 +0.4 384,323 + MIT1002_00356 0.60 +0.6 384,323 + MIT1002_00356 0.60 -0.2 384,334 + MIT1002_00356 0.62 +0.8 384,342 + MIT1002_00356 0.64 +1.6 384,384 + MIT1002_00356 0.72 +1.7 384,392 - MIT1002_00356 0.74 +0.1 384,401 + MIT1002_00356 0.76 -1.9 384,430 - MIT1002_00356 0.82 +0.1 384,457 - MIT1002_00356 0.87 -0.4 384,526 + +1.4 384,579 - -0.1 384,650 - -0.1 384,661 - -0.7 384,661 - +0.6 384,682 + +0.1 384,695 - -1.4 384,788 + MIT1002_00357 0.19 +0.6 384,856 - MIT1002_00357 0.27 -0.7 384,858 + MIT1002_00357 0.27 -0.4 384,870 - MIT1002_00357 0.29 -0.9 384,908 + MIT1002_00357 0.33 +1.8 384,913 + MIT1002_00357 0.34 -1.7 384,913 + MIT1002_00357 0.34 +1.4 384,914 + MIT1002_00357 0.34 +2.2 384,914 + MIT1002_00357 0.34 -0.4 384,914 + MIT1002_00357 0.34 +0.1 384,914 + MIT1002_00357 0.34 +0.4 384,921 - MIT1002_00357 0.34 +0.3 384,921 - MIT1002_00357 0.34 -0.7 384,921 - MIT1002_00357 0.34 +1.8 384,921 - MIT1002_00357 0.34 +0.0 384,922 - MIT1002_00357 0.35 -0.1 384,922 - MIT1002_00357 0.35 -1.0 384,922 - MIT1002_00357 0.35 +1.6 384,922 - MIT1002_00357 0.35 -0.2 384,922 - MIT1002_00357 0.35 +1.6 384,929 + MIT1002_00357 0.35 -1.8 384,996 + MIT1002_00357 0.43 -1.8 385,030 + MIT1002_00357 0.47 -1.4 385,038 - MIT1002_00357 0.48 +0.7 385,102 - MIT1002_00357 0.55 +0.0 385,105 - MIT1002_00357 0.55 -0.3 385,138 - MIT1002_00357 0.59 -1.0 385,153 + MIT1002_00357 0.61 -1.0 385,161 - MIT1002_00357 0.61 +0.9 385,219 + MIT1002_00357 0.68 -0.8 385,261 - MIT1002_00357 0.73 -0.6 385,333 + MIT1002_00357 0.81 +0.2 385,333 + MIT1002_00357 0.81 -1.1 385,333 + MIT1002_00357 0.81 +0.5 385,333 - MIT1002_00357 0.81 -2.3 385,334 - MIT1002_00357 0.81 -0.6 385,341 - MIT1002_00357 0.82 +0.3 385,341 - MIT1002_00357 0.82 -0.8 385,341 - MIT1002_00357 0.82 -0.0 385,341 - MIT1002_00357 0.82 +0.8 385,341 - MIT1002_00357 0.82 -0.6 385,341 - MIT1002_00357 0.82 +2.9 385,358 - MIT1002_00357 0.84 +0.6 385,422 - -0.3 385,422 - +1.6 385,435 + +0.8 385,472 + +0.8 385,522 - +2.8 385,522 - +0.5 385,550 - -0.9 385,553 - +0.4 385,553 - -1.6 385,553 - +0.3 385,553 - -0.8 385,639 - +2.0 385,643 - +0.5 385,657 + -0.5 385,662 + -1.6 385,664 - -1.0 385,664 - +1.1 385,670 - -0.1 385,677 - -0.6 385,677 - -0.8 385,706 + MIT1002_00358 0.11 +0.7 385,706 + MIT1002_00358 0.11 -0.5 385,706 + MIT1002_00358 0.11 +0.0 385,714 - MIT1002_00358 0.11 -1.5 385,714 - MIT1002_00358 0.11 +1.9 385,714 - MIT1002_00358 0.11 +0.4 385,728 - MIT1002_00358 0.12 -0.5 385,934 - MIT1002_00358 0.23 -0.9 385,952 + MIT1002_00358 0.24 -0.5 385,991 + MIT1002_00358 0.26 -0.3 385,999 - MIT1002_00358 0.26 +0.5 385,999 - MIT1002_00358 0.26 +0.7 386,051 + MIT1002_00358 0.29 +0.4 386,059 - MIT1002_00358 0.29 -0.6 386,059 - MIT1002_00358 0.29 +1.1 386,077 + MIT1002_00358 0.30 +1.6 386,107 - MIT1002_00358 0.32 +1.3 386,107 - MIT1002_00358 0.32 -0.7 386,193 - MIT1002_00358 0.36 -0.4 386,193 - MIT1002_00358 0.36 +0.4 386,193 - MIT1002_00358 0.36 +1.0 386,193 - MIT1002_00358 0.36 +1.4 386,197 + MIT1002_00358 0.36 +1.1 386,232 + MIT1002_00358 0.38 -0.6 386,374 - MIT1002_00358 0.46 -0.3 386,374 - MIT1002_00358 0.46 +0.9 386,379 - MIT1002_00358 0.46 -1.0 386,388 + MIT1002_00358 0.46 -2.2 386,461 + MIT1002_00358 0.50 -0.7 386,469 - MIT1002_00358 0.51 +0.1 386,472 + MIT1002_00358 0.51 -3.2 386,480 - MIT1002_00358 0.51 +0.0
Or see this region's nucleotide sequence