Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00349

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00348 and MIT1002_00349 are separated by 138 nucleotidesMIT1002_00349 and MIT1002_00350 are separated by 126 nucleotidesMIT1002_00350 and MIT1002_00351 overlap by 20 nucleotides MIT1002_00348: MIT1002_00348 - hypothetical protein, at 372,803 to 374,131 _00348 MIT1002_00349: MIT1002_00349 - hypothetical protein, at 374,270 to 376,528 _00349 MIT1002_00350: MIT1002_00350 - hypothetical protein, at 376,655 to 376,855 _00350 MIT1002_00351: MIT1002_00351 - Degradation activator, at 376,836 to 377,870 _00351 Position (kb) 374 375 376 377Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 374.248 kb on + strandat 374.254 kb on - strandat 374.279 kb on + strandat 374.303 kb on + strandat 374.311 kb on + strandat 374.311 kb on + strandat 374.319 kb on - strandat 374.319 kb on - strandat 374.319 kb on - strandat 374.350 kb on + strandat 374.358 kb on - strandat 374.361 kb on + strandat 374.369 kb on - strandat 374.391 kb on + strandat 374.392 kb on - strandat 374.447 kb on - strandat 374.524 kb on - strand, within MIT1002_00349at 374.560 kb on - strand, within MIT1002_00349at 374.563 kb on + strand, within MIT1002_00349at 374.701 kb on + strand, within MIT1002_00349at 374.745 kb on + strand, within MIT1002_00349at 374.751 kb on - strand, within MIT1002_00349at 374.761 kb on - strand, within MIT1002_00349at 374.799 kb on - strand, within MIT1002_00349at 374.801 kb on + strand, within MIT1002_00349at 374.801 kb on + strand, within MIT1002_00349at 374.843 kb on - strand, within MIT1002_00349at 374.867 kb on + strand, within MIT1002_00349at 374.876 kb on + strand, within MIT1002_00349at 374.882 kb on - strand, within MIT1002_00349at 374.886 kb on + strand, within MIT1002_00349at 374.886 kb on + strand, within MIT1002_00349at 374.894 kb on - strand, within MIT1002_00349at 374.894 kb on - strand, within MIT1002_00349at 374.942 kb on + strand, within MIT1002_00349at 375.038 kb on + strand, within MIT1002_00349at 375.083 kb on + strand, within MIT1002_00349at 375.088 kb on + strand, within MIT1002_00349at 375.088 kb on + strand, within MIT1002_00349at 375.088 kb on + strand, within MIT1002_00349at 375.096 kb on - strand, within MIT1002_00349at 375.096 kb on - strand, within MIT1002_00349at 375.096 kb on - strand, within MIT1002_00349at 375.106 kb on + strand, within MIT1002_00349at 375.106 kb on + strand, within MIT1002_00349at 375.106 kb on + strand, within MIT1002_00349at 375.107 kb on - strand, within MIT1002_00349at 375.114 kb on - strand, within MIT1002_00349at 375.114 kb on - strand, within MIT1002_00349at 375.114 kb on - strand, within MIT1002_00349at 375.150 kb on - strand, within MIT1002_00349at 375.199 kb on + strand, within MIT1002_00349at 375.202 kb on - strand, within MIT1002_00349at 375.207 kb on + strand, within MIT1002_00349at 375.207 kb on + strand, within MIT1002_00349at 375.214 kb on + strand, within MIT1002_00349at 375.244 kb on + strand, within MIT1002_00349at 375.284 kb on - strand, within MIT1002_00349at 375.342 kb on - strand, within MIT1002_00349at 375.350 kb on - strand, within MIT1002_00349at 375.360 kb on - strand, within MIT1002_00349at 375.388 kb on + strand, within MIT1002_00349at 375.396 kb on - strand, within MIT1002_00349at 375.396 kb on - strand, within MIT1002_00349at 375.428 kb on + strand, within MIT1002_00349at 375.446 kb on - strand, within MIT1002_00349at 375.504 kb on - strand, within MIT1002_00349at 375.517 kb on + strand, within MIT1002_00349at 375.542 kb on + strand, within MIT1002_00349at 375.555 kb on - strand, within MIT1002_00349at 375.555 kb on - strand, within MIT1002_00349at 375.603 kb on + strand, within MIT1002_00349at 375.654 kb on + strand, within MIT1002_00349at 375.691 kb on - strand, within MIT1002_00349at 375.701 kb on + strand, within MIT1002_00349at 375.729 kb on - strand, within MIT1002_00349at 375.737 kb on + strand, within MIT1002_00349at 375.744 kb on + strand, within MIT1002_00349at 375.745 kb on - strand, within MIT1002_00349at 375.755 kb on + strand, within MIT1002_00349at 375.763 kb on - strand, within MIT1002_00349at 375.763 kb on - strand, within MIT1002_00349at 375.777 kb on + strand, within MIT1002_00349at 375.793 kb on + strand, within MIT1002_00349at 375.853 kb on - strand, within MIT1002_00349at 375.888 kb on - strand, within MIT1002_00349at 375.904 kb on + strand, within MIT1002_00349at 375.959 kb on + strand, within MIT1002_00349at 376.014 kb on - strand, within MIT1002_00349at 376.063 kb on + strand, within MIT1002_00349at 376.070 kb on + strand, within MIT1002_00349at 376.071 kb on - strand, within MIT1002_00349at 376.077 kb on - strand, within MIT1002_00349at 376.078 kb on - strand, within MIT1002_00349at 376.089 kb on + strand, within MIT1002_00349at 376.140 kb on + strand, within MIT1002_00349at 376.148 kb on - strand, within MIT1002_00349at 376.161 kb on + strand, within MIT1002_00349at 376.169 kb on - strand, within MIT1002_00349at 376.183 kb on - strand, within MIT1002_00349at 376.196 kb on + strand, within MIT1002_00349at 376.208 kb on + strand, within MIT1002_00349at 376.287 kb on + strand, within MIT1002_00349at 376.287 kb on + strand, within MIT1002_00349at 376.386 kb on + strandat 376.396 kb on + strandat 376.471 kb on + strandat 376.471 kb on + strandat 376.471 kb on + strandat 376.479 kb on - strandat 376.479 kb on - strandat 376.485 kb on - strandat 376.486 kb on + strandat 376.566 kb on - strandat 376.602 kb on - strandat 376.722 kb on + strand, within MIT1002_00350at 376.772 kb on + strand, within MIT1002_00350at 376.780 kb on - strand, within MIT1002_00350at 376.860 kb on + strandat 376.870 kb on + strandat 376.911 kb on - strandat 376.963 kb on + strand, within MIT1002_00351at 376.983 kb on + strand, within MIT1002_00351at 377.061 kb on - strand, within MIT1002_00351at 377.066 kb on + strand, within MIT1002_00351at 377.076 kb on + strand, within MIT1002_00351at 377.086 kb on + strand, within MIT1002_00351at 377.091 kb on - strand, within MIT1002_00351at 377.094 kb on - strand, within MIT1002_00351at 377.119 kb on + strand, within MIT1002_00351at 377.152 kb on + strand, within MIT1002_00351at 377.218 kb on - strand, within MIT1002_00351at 377.233 kb on - strand, within MIT1002_00351at 377.246 kb on + strand, within MIT1002_00351at 377.254 kb on - strand, within MIT1002_00351at 377.306 kb on - strand, within MIT1002_00351at 377.365 kb on + strand, within MIT1002_00351at 377.425 kb on + strand, within MIT1002_00351at 377.460 kb on + strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.483 kb on - strand, within MIT1002_00351at 377.518 kb on + strand, within MIT1002_00351at 377.526 kb on - strand, within MIT1002_00351

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
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374,248 + +1.3
374,254 - -0.2
374,279 + -1.7
374,303 + +0.0
374,311 + -0.4
374,311 + -0.4
374,319 - +0.5
374,319 - +1.6
374,319 - -1.5
374,350 + -0.1
374,358 - +0.5
374,361 + -0.4
374,369 - -1.1
374,391 + -0.8
374,392 - +0.5
374,447 - -0.7
374,524 - MIT1002_00349 0.11 +0.9
374,560 - MIT1002_00349 0.13 +1.4
374,563 + MIT1002_00349 0.13 -0.7
374,701 + MIT1002_00349 0.19 +1.0
374,745 + MIT1002_00349 0.21 -0.6
374,751 - MIT1002_00349 0.21 +0.9
374,761 - MIT1002_00349 0.22 +0.2
374,799 - MIT1002_00349 0.23 -0.2
374,801 + MIT1002_00349 0.24 +1.3
374,801 + MIT1002_00349 0.24 -1.0
374,843 - MIT1002_00349 0.25 -0.6
374,867 + MIT1002_00349 0.26 -1.2
374,876 + MIT1002_00349 0.27 +1.0
374,882 - MIT1002_00349 0.27 +0.5
374,886 + MIT1002_00349 0.27 +0.2
374,886 + MIT1002_00349 0.27 +0.9
374,894 - MIT1002_00349 0.28 -0.6
374,894 - MIT1002_00349 0.28 +1.2
374,942 + MIT1002_00349 0.30 -2.2
375,038 + MIT1002_00349 0.34 -1.5
375,083 + MIT1002_00349 0.36 +0.1
375,088 + MIT1002_00349 0.36 +1.2
375,088 + MIT1002_00349 0.36 -0.8
375,088 + MIT1002_00349 0.36 -2.0
375,096 - MIT1002_00349 0.37 -0.6
375,096 - MIT1002_00349 0.37 -0.9
375,096 - MIT1002_00349 0.37 -0.7
375,106 + MIT1002_00349 0.37 -1.4
375,106 + MIT1002_00349 0.37 +0.8
375,106 + MIT1002_00349 0.37 +0.3
375,107 - MIT1002_00349 0.37 -1.4
375,114 - MIT1002_00349 0.37 -0.8
375,114 - MIT1002_00349 0.37 -1.7
375,114 - MIT1002_00349 0.37 -0.1
375,150 - MIT1002_00349 0.39 -1.3
375,199 + MIT1002_00349 0.41 -0.3
375,202 - MIT1002_00349 0.41 +0.3
375,207 + MIT1002_00349 0.41 -0.4
375,207 + MIT1002_00349 0.41 +1.7
375,214 + MIT1002_00349 0.42 +0.6
375,244 + MIT1002_00349 0.43 +1.1
375,284 - MIT1002_00349 0.45 +0.6
375,342 - MIT1002_00349 0.47 +1.2
375,350 - MIT1002_00349 0.48 -0.9
375,360 - MIT1002_00349 0.48 +3.6
375,388 + MIT1002_00349 0.49 +0.6
375,396 - MIT1002_00349 0.50 -0.1
375,396 - MIT1002_00349 0.50 +1.2
375,428 + MIT1002_00349 0.51 -0.7
375,446 - MIT1002_00349 0.52 +0.1
375,504 - MIT1002_00349 0.55 -0.5
375,517 + MIT1002_00349 0.55 -1.3
375,542 + MIT1002_00349 0.56 +0.4
375,555 - MIT1002_00349 0.57 +1.0
375,555 - MIT1002_00349 0.57 +0.9
375,603 + MIT1002_00349 0.59 -0.1
375,654 + MIT1002_00349 0.61 +2.4
375,691 - MIT1002_00349 0.63 -0.6
375,701 + MIT1002_00349 0.63 -0.6
375,729 - MIT1002_00349 0.65 +1.1
375,737 + MIT1002_00349 0.65 +2.0
375,744 + MIT1002_00349 0.65 -0.6
375,745 - MIT1002_00349 0.65 -1.9
375,755 + MIT1002_00349 0.66 +1.2
375,763 - MIT1002_00349 0.66 +0.0
375,763 - MIT1002_00349 0.66 +0.8
375,777 + MIT1002_00349 0.67 +1.2
375,793 + MIT1002_00349 0.67 +0.5
375,853 - MIT1002_00349 0.70 +0.3
375,888 - MIT1002_00349 0.72 +0.0
375,904 + MIT1002_00349 0.72 -0.3
375,959 + MIT1002_00349 0.75 +0.2
376,014 - MIT1002_00349 0.77 +0.6
376,063 + MIT1002_00349 0.79 +0.7
376,070 + MIT1002_00349 0.80 -0.4
376,071 - MIT1002_00349 0.80 +0.1
376,077 - MIT1002_00349 0.80 +0.3
376,078 - MIT1002_00349 0.80 +1.0
376,089 + MIT1002_00349 0.81 +1.9
376,140 + MIT1002_00349 0.83 -0.4
376,148 - MIT1002_00349 0.83 +1.2
376,161 + MIT1002_00349 0.84 -0.5
376,169 - MIT1002_00349 0.84 -0.5
376,183 - MIT1002_00349 0.85 +0.3
376,196 + MIT1002_00349 0.85 -0.8
376,208 + MIT1002_00349 0.86 -0.7
376,287 + MIT1002_00349 0.89 -0.8
376,287 + MIT1002_00349 0.89 -2.3
376,386 + +0.4
376,396 + +2.9
376,471 + +0.3
376,471 + -0.0
376,471 + -1.5
376,479 - +1.3
376,479 - -1.2
376,485 - -2.2
376,486 + +0.7
376,566 - -0.6
376,602 - -0.6
376,722 + MIT1002_00350 0.33 -1.2
376,772 + MIT1002_00350 0.58 -0.5
376,780 - MIT1002_00350 0.62 -1.7
376,860 + -1.6
376,870 + -3.0
376,911 - -0.6
376,963 + MIT1002_00351 0.12 -3.4
376,983 + MIT1002_00351 0.14 -2.3
377,061 - MIT1002_00351 0.22 -2.2
377,066 + MIT1002_00351 0.22 -2.6
377,076 + MIT1002_00351 0.23 -1.8
377,086 + MIT1002_00351 0.24 -1.1
377,091 - MIT1002_00351 0.25 -3.3
377,094 - MIT1002_00351 0.25 -1.7
377,119 + MIT1002_00351 0.27 -2.5
377,152 + MIT1002_00351 0.31 -4.3
377,218 - MIT1002_00351 0.37 -1.5
377,233 - MIT1002_00351 0.38 -2.5
377,246 + MIT1002_00351 0.40 -3.5
377,254 - MIT1002_00351 0.40 -0.3
377,306 - MIT1002_00351 0.45 -1.9
377,365 + MIT1002_00351 0.51 -2.1
377,425 + MIT1002_00351 0.57 -2.2
377,460 + MIT1002_00351 0.60 -3.7
377,468 - MIT1002_00351 0.61 -3.1
377,468 - MIT1002_00351 0.61 -3.5
377,468 - MIT1002_00351 0.61 -0.4
377,468 - MIT1002_00351 0.61 -3.5
377,483 - MIT1002_00351 0.63 -5.4
377,518 + MIT1002_00351 0.66 -1.1
377,526 - MIT1002_00351 0.67 -1.5

Or see this region's nucleotide sequence