Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00299 and MIT1002_00300 are separated by 283 nucleotides MIT1002_00300 and MIT1002_00301 are separated by 216 nucleotides MIT1002_00301 and MIT1002_00302 overlap by 13 nucleotides
MIT1002_00299: MIT1002_00299 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 324,306 to 325,184
_00299
MIT1002_00300: MIT1002_00300 - hypothetical protein, at 325,468 to 325,710
_00300
MIT1002_00301: MIT1002_00301 - Diacylglycerol kinase, at 325,927 to 326,334
_00301
MIT1002_00302: MIT1002_00302 - Phosphoethanolamine transferase EptA, at 326,322 to 327,929
_00302
Position (kb) 325
326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 324.936 kb on + strand, within MIT1002_00299 at 324.946 kb on + strand, within MIT1002_00299 at 324.948 kb on + strand, within MIT1002_00299 at 324.953 kb on + strand, within MIT1002_00299 at 324.954 kb on - strand, within MIT1002_00299 at 324.961 kb on + strand, within MIT1002_00299 at 324.961 kb on + strand, within MIT1002_00299 at 324.964 kb on - strand, within MIT1002_00299 at 324.964 kb on - strand, within MIT1002_00299 at 324.964 kb on - strand, within MIT1002_00299 at 324.969 kb on - strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.970 kb on + strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.978 kb on - strand, within MIT1002_00299 at 324.980 kb on - strand, within MIT1002_00299 at 324.980 kb on - strand, within MIT1002_00299 at 325.014 kb on + strand, within MIT1002_00299 at 325.016 kb on + strand, within MIT1002_00299 at 325.016 kb on + strand, within MIT1002_00299 at 325.037 kb on + strand, within MIT1002_00299 at 325.038 kb on - strand, within MIT1002_00299 at 325.045 kb on - strand, within MIT1002_00299 at 325.047 kb on + strand, within MIT1002_00299 at 325.047 kb on + strand, within MIT1002_00299 at 325.047 kb on + strand, within MIT1002_00299 at 325.047 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.049 kb on + strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.055 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.057 kb on - strand, within MIT1002_00299 at 325.116 kb on - strand at 325.127 kb on - strand at 325.127 kb on - strand at 325.131 kb on + strand at 325.131 kb on + strand at 325.132 kb on - strand at 325.138 kb on - strand at 325.140 kb on - strand at 325.150 kb on - strand at 325.154 kb on + strand at 325.157 kb on - strand at 325.164 kb on - strand at 325.277 kb on - strand at 325.286 kb on - strand at 325.308 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.356 kb on + strand at 325.357 kb on - strand at 325.364 kb on - strand at 325.379 kb on + strand at 325.390 kb on + strand at 325.390 kb on + strand at 325.391 kb on + strand at 325.392 kb on + strand at 325.393 kb on - strand at 325.399 kb on - strand at 325.400 kb on - strand at 325.404 kb on + strand at 325.404 kb on + strand at 325.411 kb on - strand at 325.412 kb on - strand at 325.432 kb on + strand at 325.504 kb on - strand, within MIT1002_00300 at 325.549 kb on - strand, within MIT1002_00300 at 325.633 kb on - strand, within MIT1002_00300 at 325.635 kb on - strand, within MIT1002_00300 at 325.733 kb on + strand at 325.733 kb on + strand at 325.738 kb on + strand at 325.739 kb on + strand at 325.739 kb on + strand at 325.772 kb on - strand at 325.773 kb on - strand at 325.802 kb on + strand at 325.857 kb on - strand at 325.867 kb on + strand at 325.876 kb on + strand at 325.880 kb on + strand at 325.882 kb on + strand at 325.887 kb on + strand at 325.890 kb on - strand at 325.890 kb on - strand at 325.892 kb on + strand at 325.892 kb on + strand at 325.892 kb on + strand at 325.892 kb on + strand at 325.894 kb on + strand at 325.895 kb on - strand at 325.895 kb on - strand at 325.900 kb on - strand at 325.908 kb on - strand at 325.927 kb on - strand at 325.942 kb on - strand at 325.950 kb on - strand at 325.952 kb on + strand at 325.952 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.960 kb on - strand at 325.960 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.999 kb on + strand, within MIT1002_00301 at 325.999 kb on + strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.017 kb on + strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.050 kb on + strand, within MIT1002_00301 at 326.057 kb on - strand, within MIT1002_00301 at 326.057 kb on - strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.111 kb on - strand, within MIT1002_00301 at 326.111 kb on - strand, within MIT1002_00301 at 326.190 kb on - strand, within MIT1002_00301 at 326.322 kb on - strand at 326.365 kb on - strand at 326.378 kb on - strand at 326.595 kb on - strand, within MIT1002_00302 at 326.653 kb on + strand, within MIT1002_00302 at 326.731 kb on + strand, within MIT1002_00302 at 326.735 kb on - strand, within MIT1002_00302 at 326.771 kb on + strand, within MIT1002_00302 at 326.771 kb on + strand, within MIT1002_00302 at 326.776 kb on + strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.781 kb on + strand, within MIT1002_00302 at 326.804 kb on + strand, within MIT1002_00302 at 326.809 kb on + strand, within MIT1002_00302 at 326.810 kb on - strand, within MIT1002_00302 at 326.827 kb on - strand, within MIT1002_00302 at 326.895 kb on + strand, within MIT1002_00302 at 326.903 kb on + strand, within MIT1002_00302 at 326.903 kb on + strand, within MIT1002_00302 at 326.911 kb on + strand, within MIT1002_00302 at 326.921 kb on - strand, within MIT1002_00302 at 326.927 kb on + strand, within MIT1002_00302 at 326.934 kb on - strand, within MIT1002_00302 at 326.947 kb on + strand, within MIT1002_00302 at 326.953 kb on - strand, within MIT1002_00302 at 326.955 kb on - strand, within MIT1002_00302 at 326.982 kb on + strand, within MIT1002_00302 at 327.062 kb on + strand, within MIT1002_00302 at 327.080 kb on - strand, within MIT1002_00302 at 327.108 kb on + strand, within MIT1002_00302 at 327.117 kb on - strand, within MIT1002_00302 at 327.155 kb on + strand, within MIT1002_00302 at 327.189 kb on + strand, within MIT1002_00302 at 327.196 kb on + strand, within MIT1002_00302 at 327.224 kb on - strand, within MIT1002_00302 at 327.232 kb on - strand, within MIT1002_00302 at 327.273 kb on + strand, within MIT1002_00302 at 327.273 kb on + strand, within MIT1002_00302 at 327.273 kb on + strand, within MIT1002_00302 at 327.281 kb on - strand, within MIT1002_00302 at 327.311 kb on - strand, within MIT1002_00302 at 327.332 kb on - strand, within MIT1002_00302
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 324,936 + MIT1002_00299 0.72 -0.4 324,946 + MIT1002_00299 0.73 +1.0 324,948 + MIT1002_00299 0.73 -0.2 324,953 + MIT1002_00299 0.74 -1.2 324,954 - MIT1002_00299 0.74 -1.9 324,961 + MIT1002_00299 0.75 -0.8 324,961 + MIT1002_00299 0.75 +0.1 324,964 - MIT1002_00299 0.75 -0.5 324,964 - MIT1002_00299 0.75 -0.5 324,964 - MIT1002_00299 0.75 -0.2 324,969 - MIT1002_00299 0.75 -0.8 324,970 + MIT1002_00299 0.76 -2.3 324,970 + MIT1002_00299 0.76 -0.9 324,970 + MIT1002_00299 0.76 +0.6 324,970 + MIT1002_00299 0.76 +1.0 324,970 + MIT1002_00299 0.76 -0.9 324,978 - MIT1002_00299 0.76 -0.5 324,978 - MIT1002_00299 0.76 -0.9 324,978 - MIT1002_00299 0.76 +0.2 324,978 - MIT1002_00299 0.76 +0.4 324,978 - MIT1002_00299 0.76 +1.0 324,980 - MIT1002_00299 0.77 -1.0 324,980 - MIT1002_00299 0.77 +3.2 325,014 + MIT1002_00299 0.81 -2.1 325,016 + MIT1002_00299 0.81 -2.8 325,016 + MIT1002_00299 0.81 -2.0 325,037 + MIT1002_00299 0.83 +0.1 325,038 - MIT1002_00299 0.83 -1.1 325,045 - MIT1002_00299 0.84 -0.7 325,047 + MIT1002_00299 0.84 -1.2 325,047 + MIT1002_00299 0.84 +1.6 325,047 + MIT1002_00299 0.84 -0.3 325,047 + MIT1002_00299 0.84 +2.5 325,049 + MIT1002_00299 0.85 -1.3 325,049 + MIT1002_00299 0.85 +0.8 325,049 + MIT1002_00299 0.85 -0.6 325,049 + MIT1002_00299 0.85 +0.5 325,049 + MIT1002_00299 0.85 +1.6 325,055 - MIT1002_00299 0.85 -2.0 325,055 - MIT1002_00299 0.85 -0.8 325,055 - MIT1002_00299 0.85 +1.0 325,055 - MIT1002_00299 0.85 -1.5 325,055 - MIT1002_00299 0.85 -1.5 325,055 - MIT1002_00299 0.85 -0.3 325,055 - MIT1002_00299 0.85 +1.4 325,057 - MIT1002_00299 0.85 +0.7 325,057 - MIT1002_00299 0.85 -0.6 325,057 - MIT1002_00299 0.85 +1.3 325,057 - MIT1002_00299 0.85 -2.0 325,057 - MIT1002_00299 0.85 -2.2 325,116 - +1.5 325,127 - -0.6 325,127 - -0.0 325,131 + -1.1 325,131 + +0.2 325,132 - -0.6 325,138 - +0.2 325,140 - -2.2 325,150 - -0.6 325,154 + -2.6 325,157 - +0.1 325,164 - +1.2 325,277 - -2.0 325,286 - +0.1 325,308 + -2.4 325,337 + -0.2 325,337 + -0.8 325,337 + -1.5 325,337 + -1.5 325,337 + -1.2 325,337 + -1.4 325,337 + +0.2 325,345 - -1.8 325,345 - -0.9 325,345 - -1.4 325,345 - -1.1 325,345 - +1.5 325,356 + -0.6 325,357 - +0.6 325,364 - -0.6 325,379 + +1.6 325,390 + +0.8 325,390 + -1.6 325,391 + -0.8 325,392 + -2.5 325,393 - +0.8 325,399 - -0.6 325,400 - +1.0 325,404 + -1.6 325,404 + +0.1 325,411 - -0.0 325,412 - +0.9 325,432 + +0.1 325,504 - MIT1002_00300 0.15 +0.2 325,549 - MIT1002_00300 0.33 +0.2 325,633 - MIT1002_00300 0.68 +1.0 325,635 - MIT1002_00300 0.69 -1.7 325,733 + +0.2 325,733 + -1.2 325,738 + +1.0 325,739 + +1.6 325,739 + +0.4 325,772 - +0.8 325,773 - -1.3 325,802 + -0.9 325,857 - +0.3 325,867 + -0.2 325,876 + -0.5 325,880 + +0.8 325,882 + -0.7 325,887 + -1.4 325,890 - +1.0 325,890 - -1.4 325,892 + -1.6 325,892 + -1.3 325,892 + -2.4 325,892 + -0.5 325,894 + -0.2 325,895 - -1.3 325,895 - +0.9 325,900 - -1.1 325,908 - +1.2 325,927 - -1.6 325,942 - +1.1 325,950 - -0.2 325,952 + +0.2 325,952 + +0.0 325,954 + +0.2 325,954 + +0.6 325,954 + +0.2 325,954 + -2.8 325,954 + +1.2 325,960 - -2.2 325,960 - -2.1 325,962 - +0.6 325,962 - +0.1 325,962 - -0.4 325,962 - +0.5 325,962 - +1.1 325,962 - +2.2 325,962 - -0.0 325,962 - -0.6 325,999 + MIT1002_00301 0.18 -1.0 325,999 + MIT1002_00301 0.18 +1.1 326,007 - MIT1002_00301 0.20 +0.7 326,007 - MIT1002_00301 0.20 -0.9 326,007 - MIT1002_00301 0.20 -1.4 326,007 - MIT1002_00301 0.20 -0.7 326,017 + MIT1002_00301 0.22 -0.3 326,025 - MIT1002_00301 0.24 -0.0 326,025 - MIT1002_00301 0.24 +1.5 326,025 - MIT1002_00301 0.24 -0.1 326,025 - MIT1002_00301 0.24 -0.8 326,025 - MIT1002_00301 0.24 -0.5 326,025 - MIT1002_00301 0.24 -0.2 326,025 - MIT1002_00301 0.24 -0.1 326,050 + MIT1002_00301 0.30 -0.8 326,057 - MIT1002_00301 0.32 -0.3 326,057 - MIT1002_00301 0.32 -1.8 326,103 + MIT1002_00301 0.43 -1.5 326,103 + MIT1002_00301 0.43 -0.8 326,103 + MIT1002_00301 0.43 -0.1 326,103 + MIT1002_00301 0.43 +2.0 326,103 + MIT1002_00301 0.43 -0.8 326,103 + MIT1002_00301 0.43 +0.7 326,111 - MIT1002_00301 0.45 -0.3 326,111 - MIT1002_00301 0.45 -0.6 326,190 - MIT1002_00301 0.64 +1.2 326,322 - +0.4 326,365 - +0.5 326,378 - +1.3 326,595 - MIT1002_00302 0.17 +2.3 326,653 + MIT1002_00302 0.21 +1.4 326,731 + MIT1002_00302 0.25 -2.1 326,735 - MIT1002_00302 0.26 -0.3 326,771 + MIT1002_00302 0.28 -1.4 326,771 + MIT1002_00302 0.28 +1.2 326,776 + MIT1002_00302 0.28 +0.9 326,779 - MIT1002_00302 0.28 +0.8 326,779 - MIT1002_00302 0.28 +1.3 326,779 - MIT1002_00302 0.28 +0.7 326,779 - MIT1002_00302 0.28 +1.4 326,779 - MIT1002_00302 0.28 +2.6 326,781 + MIT1002_00302 0.29 -1.7 326,804 + MIT1002_00302 0.30 +0.8 326,809 + MIT1002_00302 0.30 +0.1 326,810 - MIT1002_00302 0.30 +0.8 326,827 - MIT1002_00302 0.31 -0.4 326,895 + MIT1002_00302 0.36 +0.2 326,903 + MIT1002_00302 0.36 +0.7 326,903 + MIT1002_00302 0.36 +1.2 326,911 + MIT1002_00302 0.37 -1.1 326,921 - MIT1002_00302 0.37 -0.2 326,927 + MIT1002_00302 0.38 +0.6 326,934 - MIT1002_00302 0.38 +1.6 326,947 + MIT1002_00302 0.39 -0.2 326,953 - MIT1002_00302 0.39 -1.0 326,955 - MIT1002_00302 0.39 -0.2 326,982 + MIT1002_00302 0.41 +0.2 327,062 + MIT1002_00302 0.46 -0.6 327,080 - MIT1002_00302 0.47 -0.5 327,108 + MIT1002_00302 0.49 +1.6 327,117 - MIT1002_00302 0.49 -0.2 327,155 + MIT1002_00302 0.52 -0.2 327,189 + MIT1002_00302 0.54 -0.7 327,196 + MIT1002_00302 0.54 +0.3 327,224 - MIT1002_00302 0.56 +2.8 327,232 - MIT1002_00302 0.57 -1.8 327,273 + MIT1002_00302 0.59 -0.6 327,273 + MIT1002_00302 0.59 -0.9 327,273 + MIT1002_00302 0.59 -0.3 327,281 - MIT1002_00302 0.60 +0.6 327,311 - MIT1002_00302 0.62 -0.6 327,332 - MIT1002_00302 0.63 -1.3
Or see this region's nucleotide sequence