Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00162 and MIT1002_00163 are separated by 1 nucleotides MIT1002_00163 and MIT1002_00164 are separated by 352 nucleotides MIT1002_00164 and MIT1002_00165 are separated by 88 nucleotides
MIT1002_00162: MIT1002_00162 - putative glycosyl transferase, at 178,023 to 179,090
_00162
MIT1002_00163: MIT1002_00163 - phosphatidylglycerophosphatase B, at 179,092 to 179,610
_00163
MIT1002_00164: MIT1002_00164 - Regulator of ribonuclease activity A, at 179,963 to 180,448
_00164
MIT1002_00165: MIT1002_00165 - Multiple sugar-binding protein precursor, at 180,537 to 181,778
_00165
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 178.993 kb on + strand at 179.012 kb on + strand at 179.012 kb on + strand at 179.020 kb on - strand at 179.051 kb on - strand at 179.064 kb on + strand at 179.064 kb on + strand at 179.072 kb on - strand at 179.072 kb on - strand at 179.072 kb on - strand at 179.072 kb on - strand at 179.074 kb on + strand at 179.082 kb on - strand at 179.083 kb on + strand at 179.139 kb on - strand at 179.162 kb on - strand, within MIT1002_00163 at 179.170 kb on - strand, within MIT1002_00163 at 179.212 kb on + strand, within MIT1002_00163 at 179.212 kb on + strand, within MIT1002_00163 at 179.226 kb on - strand, within MIT1002_00163 at 179.252 kb on + strand, within MIT1002_00163 at 179.280 kb on - strand, within MIT1002_00163 at 179.362 kb on - strand, within MIT1002_00163 at 179.398 kb on - strand, within MIT1002_00163 at 179.426 kb on + strand, within MIT1002_00163 at 179.426 kb on + strand, within MIT1002_00163 at 179.429 kb on - strand, within MIT1002_00163 at 179.462 kb on + strand, within MIT1002_00163 at 179.462 kb on + strand, within MIT1002_00163 at 179.470 kb on - strand, within MIT1002_00163 at 179.633 kb on + strand at 179.643 kb on + strand at 179.651 kb on - strand at 179.885 kb on - strand at 179.895 kb on - strand at 179.909 kb on - strand at 179.961 kb on - strand at 179.966 kb on + strand at 179.966 kb on + strand at 179.976 kb on + strand at 179.976 kb on + strand at 179.976 kb on + strand at 179.976 kb on + strand at 179.984 kb on - strand at 179.984 kb on - strand at 180.006 kb on + strand at 180.092 kb on - strand, within MIT1002_00164 at 180.161 kb on + strand, within MIT1002_00164 at 180.170 kb on - strand, within MIT1002_00164 at 180.171 kb on + strand, within MIT1002_00164 at 180.179 kb on - strand, within MIT1002_00164 at 180.181 kb on + strand, within MIT1002_00164 at 180.189 kb on - strand, within MIT1002_00164 at 180.228 kb on + strand, within MIT1002_00164 at 180.236 kb on - strand, within MIT1002_00164 at 180.236 kb on - strand, within MIT1002_00164 at 180.322 kb on + strand, within MIT1002_00164 at 180.328 kb on + strand, within MIT1002_00164 at 180.423 kb on + strand at 180.423 kb on + strand at 180.431 kb on - strand at 180.442 kb on + strand at 180.451 kb on + strand at 180.453 kb on + strand at 180.632 kb on + strand at 180.718 kb on - strand, within MIT1002_00165 at 180.835 kb on + strand, within MIT1002_00165 at 180.835 kb on + strand, within MIT1002_00165 at 180.835 kb on + strand, within MIT1002_00165 at 180.835 kb on + strand, within MIT1002_00165 at 180.843 kb on - strand, within MIT1002_00165 at 180.845 kb on - strand, within MIT1002_00165 at 180.845 kb on - strand, within MIT1002_00165 at 180.907 kb on + strand, within MIT1002_00165 at 180.915 kb on - strand, within MIT1002_00165 at 180.927 kb on - strand, within MIT1002_00165 at 181.006 kb on - strand, within MIT1002_00165 at 181.016 kb on + strand, within MIT1002_00165 at 181.051 kb on + strand, within MIT1002_00165 at 181.059 kb on - strand, within MIT1002_00165 at 181.073 kb on + strand, within MIT1002_00165 at 181.074 kb on + strand, within MIT1002_00165 at 181.074 kb on - strand, within MIT1002_00165 at 181.082 kb on - strand, within MIT1002_00165 at 181.086 kb on + strand, within MIT1002_00165 at 181.132 kb on + strand, within MIT1002_00165 at 181.139 kb on + strand, within MIT1002_00165 at 181.140 kb on - strand, within MIT1002_00165 at 181.147 kb on - strand, within MIT1002_00165 at 181.167 kb on + strand, within MIT1002_00165 at 181.169 kb on + strand, within MIT1002_00165 at 181.169 kb on + strand, within MIT1002_00165 at 181.194 kb on - strand, within MIT1002_00165 at 181.270 kb on + strand, within MIT1002_00165 at 181.279 kb on + strand, within MIT1002_00165 at 181.287 kb on - strand, within MIT1002_00165 at 181.287 kb on - strand, within MIT1002_00165 at 181.301 kb on + strand, within MIT1002_00165 at 181.309 kb on - strand, within MIT1002_00165 at 181.348 kb on + strand, within MIT1002_00165 at 181.395 kb on + strand, within MIT1002_00165 at 181.395 kb on + strand, within MIT1002_00165 at 181.400 kb on + strand, within MIT1002_00165 at 181.400 kb on + strand, within MIT1002_00165 at 181.400 kb on + strand, within MIT1002_00165 at 181.408 kb on - strand, within MIT1002_00165
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 178,993 + +0.4 179,012 + +0.0 179,012 + +2.2 179,020 - +2.2 179,051 - -1.8 179,064 + -0.1 179,064 + -1.0 179,072 - -2.0 179,072 - +0.3 179,072 - +1.0 179,072 - -1.6 179,074 + +1.4 179,082 - -2.6 179,083 + +0.6 179,139 - -0.1 179,162 - MIT1002_00163 0.13 -0.4 179,170 - MIT1002_00163 0.15 -0.8 179,212 + MIT1002_00163 0.23 +0.2 179,212 + MIT1002_00163 0.23 -1.4 179,226 - MIT1002_00163 0.26 -1.6 179,252 + MIT1002_00163 0.31 -1.0 179,280 - MIT1002_00163 0.36 -0.0 179,362 - MIT1002_00163 0.52 -0.1 179,398 - MIT1002_00163 0.59 -0.5 179,426 + MIT1002_00163 0.64 +0.6 179,426 + MIT1002_00163 0.64 -0.7 179,429 - MIT1002_00163 0.65 -1.1 179,462 + MIT1002_00163 0.71 -0.8 179,462 + MIT1002_00163 0.71 -1.7 179,470 - MIT1002_00163 0.73 -1.1 179,633 + -0.4 179,643 + +0.7 179,651 - +1.0 179,885 - -0.9 179,895 - -0.4 179,909 - +1.2 179,961 - +1.6 179,966 + +1.3 179,966 + -2.3 179,976 + +0.7 179,976 + -0.3 179,976 + -0.9 179,976 + +1.5 179,984 - +2.3 179,984 - +0.3 180,006 + +1.6 180,092 - MIT1002_00164 0.27 +0.0 180,161 + MIT1002_00164 0.41 -1.2 180,170 - MIT1002_00164 0.43 +0.8 180,171 + MIT1002_00164 0.43 +1.9 180,179 - MIT1002_00164 0.44 +0.9 180,181 + MIT1002_00164 0.45 -0.4 180,189 - MIT1002_00164 0.47 +2.9 180,228 + MIT1002_00164 0.55 -1.3 180,236 - MIT1002_00164 0.56 +1.0 180,236 - MIT1002_00164 0.56 +1.6 180,322 + MIT1002_00164 0.74 +0.5 180,328 + MIT1002_00164 0.75 -0.7 180,423 + +0.2 180,423 + -1.0 180,431 - +0.8 180,442 + -0.5 180,451 + -0.6 180,453 + -0.8 180,632 + +0.9 180,718 - MIT1002_00165 0.15 -0.1 180,835 + MIT1002_00165 0.24 -0.6 180,835 + MIT1002_00165 0.24 -0.1 180,835 + MIT1002_00165 0.24 -0.6 180,835 + MIT1002_00165 0.24 -0.7 180,843 - MIT1002_00165 0.25 -1.6 180,845 - MIT1002_00165 0.25 -0.3 180,845 - MIT1002_00165 0.25 +0.0 180,907 + MIT1002_00165 0.30 +0.9 180,915 - MIT1002_00165 0.30 -1.7 180,927 - MIT1002_00165 0.31 +0.6 181,006 - MIT1002_00165 0.38 -0.7 181,016 + MIT1002_00165 0.39 +0.5 181,051 + MIT1002_00165 0.41 +1.6 181,059 - MIT1002_00165 0.42 -0.3 181,073 + MIT1002_00165 0.43 +0.0 181,074 + MIT1002_00165 0.43 +0.6 181,074 - MIT1002_00165 0.43 -1.9 181,082 - MIT1002_00165 0.44 +0.0 181,086 + MIT1002_00165 0.44 -1.6 181,132 + MIT1002_00165 0.48 -0.1 181,139 + MIT1002_00165 0.48 +0.8 181,140 - MIT1002_00165 0.49 +0.1 181,147 - MIT1002_00165 0.49 -0.5 181,167 + MIT1002_00165 0.51 -1.7 181,169 + MIT1002_00165 0.51 +1.0 181,169 + MIT1002_00165 0.51 +0.0 181,194 - MIT1002_00165 0.53 +0.6 181,270 + MIT1002_00165 0.59 +1.8 181,279 + MIT1002_00165 0.60 -2.6 181,287 - MIT1002_00165 0.60 -2.0 181,287 - MIT1002_00165 0.60 -0.4 181,301 + MIT1002_00165 0.62 -1.8 181,309 - MIT1002_00165 0.62 +0.3 181,348 + MIT1002_00165 0.65 +1.9 181,395 + MIT1002_00165 0.69 -0.9 181,395 + MIT1002_00165 0.69 +0.8 181,400 + MIT1002_00165 0.69 -0.1 181,400 + MIT1002_00165 0.69 -0.9 181,400 + MIT1002_00165 0.69 -0.2 181,408 - MIT1002_00165 0.70 -0.6
Or see this region's nucleotide sequence