Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00162 and MIT1002_00163 are separated by 1 nucleotides MIT1002_00163 and MIT1002_00164 are separated by 352 nucleotides MIT1002_00164 and MIT1002_00165 are separated by 88 nucleotides
MIT1002_00162: MIT1002_00162 - putative glycosyl transferase, at 178,023 to 179,090
_00162
MIT1002_00163: MIT1002_00163 - phosphatidylglycerophosphatase B, at 179,092 to 179,610
_00163
MIT1002_00164: MIT1002_00164 - Regulator of ribonuclease activity A, at 179,963 to 180,448
_00164
MIT1002_00165: MIT1002_00165 - Multiple sugar-binding protein precursor, at 180,537 to 181,778
_00165
Position (kb) 179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 178.097 kb on + strand at 178.105 kb on - strand at 178.105 kb on - strand at 178.197 kb on + strand, within MIT1002_00162 at 178.197 kb on + strand, within MIT1002_00162 at 178.205 kb on - strand, within MIT1002_00162 at 178.205 kb on - strand, within MIT1002_00162 at 178.298 kb on - strand, within MIT1002_00162 at 178.320 kb on - strand, within MIT1002_00162 at 178.351 kb on - strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.380 kb on + strand, within MIT1002_00162 at 178.460 kb on + strand, within MIT1002_00162 at 178.521 kb on - strand, within MIT1002_00162 at 178.607 kb on + strand, within MIT1002_00162 at 178.623 kb on + strand, within MIT1002_00162 at 178.648 kb on + strand, within MIT1002_00162 at 178.701 kb on - strand, within MIT1002_00162 at 178.763 kb on - strand, within MIT1002_00162 at 178.847 kb on + strand, within MIT1002_00162 at 178.993 kb on + strand at 179.012 kb on + strand at 179.012 kb on + strand at 179.020 kb on - strand at 179.051 kb on - strand at 179.064 kb on + strand at 179.064 kb on + strand at 179.072 kb on - strand at 179.072 kb on - strand at 179.072 kb on - strand at 179.072 kb on - strand at 179.074 kb on + strand at 179.082 kb on - strand at 179.083 kb on + strand at 179.139 kb on - strand at 179.162 kb on - strand, within MIT1002_00163 at 179.170 kb on - strand, within MIT1002_00163 at 179.212 kb on + strand, within MIT1002_00163 at 179.212 kb on + strand, within MIT1002_00163 at 179.226 kb on - strand, within MIT1002_00163 at 179.252 kb on + strand, within MIT1002_00163 at 179.280 kb on - strand, within MIT1002_00163 at 179.362 kb on - strand, within MIT1002_00163 at 179.398 kb on - strand, within MIT1002_00163 at 179.426 kb on + strand, within MIT1002_00163 at 179.426 kb on + strand, within MIT1002_00163 at 179.429 kb on - strand, within MIT1002_00163 at 179.462 kb on + strand, within MIT1002_00163 at 179.462 kb on + strand, within MIT1002_00163 at 179.470 kb on - strand, within MIT1002_00163 at 179.633 kb on + strand at 179.643 kb on + strand at 179.651 kb on - strand at 179.885 kb on - strand at 179.895 kb on - strand at 179.909 kb on - strand at 179.961 kb on - strand at 179.966 kb on + strand at 179.966 kb on + strand at 179.976 kb on + strand at 179.976 kb on + strand at 179.976 kb on + strand at 179.976 kb on + strand at 179.984 kb on - strand at 179.984 kb on - strand at 180.006 kb on + strand at 180.092 kb on - strand, within MIT1002_00164 at 180.161 kb on + strand, within MIT1002_00164 at 180.170 kb on - strand, within MIT1002_00164 at 180.171 kb on + strand, within MIT1002_00164 at 180.179 kb on - strand, within MIT1002_00164 at 180.181 kb on + strand, within MIT1002_00164 at 180.189 kb on - strand, within MIT1002_00164 at 180.228 kb on + strand, within MIT1002_00164 at 180.236 kb on - strand, within MIT1002_00164 at 180.236 kb on - strand, within MIT1002_00164 at 180.322 kb on + strand, within MIT1002_00164 at 180.328 kb on + strand, within MIT1002_00164 at 180.423 kb on + strand at 180.423 kb on + strand at 180.431 kb on - strand at 180.442 kb on + strand at 180.451 kb on + strand at 180.453 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6 remove 178,097 + +0.3 178,105 - -0.2 178,105 - +3.2 178,197 + MIT1002_00162 0.16 -0.5 178,197 + MIT1002_00162 0.16 -0.5 178,205 - MIT1002_00162 0.17 +0.4 178,205 - MIT1002_00162 0.17 -0.7 178,298 - MIT1002_00162 0.26 +0.2 178,320 - MIT1002_00162 0.28 -1.0 178,351 - MIT1002_00162 0.31 +1.2 178,380 + MIT1002_00162 0.33 +1.4 178,380 + MIT1002_00162 0.33 -1.3 178,380 + MIT1002_00162 0.33 -0.9 178,380 + MIT1002_00162 0.33 -0.1 178,460 + MIT1002_00162 0.41 -2.9 178,521 - MIT1002_00162 0.47 +0.1 178,607 + MIT1002_00162 0.55 +1.3 178,623 + MIT1002_00162 0.56 -1.1 178,648 + MIT1002_00162 0.59 +0.8 178,701 - MIT1002_00162 0.63 -0.8 178,763 - MIT1002_00162 0.69 +0.5 178,847 + MIT1002_00162 0.77 +1.1 178,993 + +0.4 179,012 + +0.0 179,012 + +2.2 179,020 - +2.2 179,051 - -1.8 179,064 + -0.1 179,064 + -1.0 179,072 - -2.0 179,072 - +0.3 179,072 - +1.0 179,072 - -1.6 179,074 + +1.4 179,082 - -2.6 179,083 + +0.6 179,139 - -0.1 179,162 - MIT1002_00163 0.13 -0.4 179,170 - MIT1002_00163 0.15 -0.8 179,212 + MIT1002_00163 0.23 +0.2 179,212 + MIT1002_00163 0.23 -1.4 179,226 - MIT1002_00163 0.26 -1.6 179,252 + MIT1002_00163 0.31 -1.0 179,280 - MIT1002_00163 0.36 -0.0 179,362 - MIT1002_00163 0.52 -0.1 179,398 - MIT1002_00163 0.59 -0.5 179,426 + MIT1002_00163 0.64 +0.6 179,426 + MIT1002_00163 0.64 -0.7 179,429 - MIT1002_00163 0.65 -1.1 179,462 + MIT1002_00163 0.71 -0.8 179,462 + MIT1002_00163 0.71 -1.7 179,470 - MIT1002_00163 0.73 -1.1 179,633 + -0.4 179,643 + +0.7 179,651 - +1.0 179,885 - -0.9 179,895 - -0.4 179,909 - +1.2 179,961 - +1.6 179,966 + +1.3 179,966 + -2.3 179,976 + +0.7 179,976 + -0.3 179,976 + -0.9 179,976 + +1.5 179,984 - +2.3 179,984 - +0.3 180,006 + +1.6 180,092 - MIT1002_00164 0.27 +0.0 180,161 + MIT1002_00164 0.41 -1.2 180,170 - MIT1002_00164 0.43 +0.8 180,171 + MIT1002_00164 0.43 +1.9 180,179 - MIT1002_00164 0.44 +0.9 180,181 + MIT1002_00164 0.45 -0.4 180,189 - MIT1002_00164 0.47 +2.9 180,228 + MIT1002_00164 0.55 -1.3 180,236 - MIT1002_00164 0.56 +1.0 180,236 - MIT1002_00164 0.56 +1.6 180,322 + MIT1002_00164 0.74 +0.5 180,328 + MIT1002_00164 0.75 -0.7 180,423 + +0.2 180,423 + -1.0 180,431 - +0.8 180,442 + -0.5 180,451 + -0.6 180,453 + -0.8
Or see this region's nucleotide sequence