Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06890 and MPMX19_06891 are separated by 86 nucleotides MPMX19_06891 and MPMX19_06892 overlap by 4 nucleotides MPMX19_06892 and MPMX19_06893 are separated by 219 nucleotides
MPMX19_06890: MPMX19_06890 - hypothetical protein, at 164,272 to 165,309
_06890
MPMX19_06891: MPMX19_06891 - Aliphatic sulfonates import ATP-binding protein SsuB, at 165,396 to 166,121
_06891
MPMX19_06892: MPMX19_06892 - Putative aliphatic sulfonates transport permease protein SsuC, at 166,118 to 166,993
_06892
MPMX19_06893: MPMX19_06893 - Nitrilotriacetate monooxygenase component A, at 167,213 to 168,532
_06893
Position (kb) 166
167 Strain fitness (log2 ratio) -2
-1
0
1 at 165.285 kb on + strand at 166.043 kb on - strand, within MPMX19_06891 at 166.134 kb on + strand at 166.134 kb on + strand at 166.134 kb on + strand at 166.134 kb on + strand at 166.134 kb on + strand at 166.135 kb on - strand at 166.135 kb on - strand at 166.210 kb on - strand, within MPMX19_06892 at 166.210 kb on - strand, within MPMX19_06892 at 166.210 kb on - strand, within MPMX19_06892 at 166.210 kb on - strand, within MPMX19_06892 at 166.210 kb on - strand, within MPMX19_06892 at 166.210 kb on - strand, within MPMX19_06892 at 166.210 kb on - strand, within MPMX19_06892 at 166.483 kb on - strand, within MPMX19_06892 at 166.483 kb on - strand, within MPMX19_06892 at 166.483 kb on - strand, within MPMX19_06892 at 166.483 kb on - strand, within MPMX19_06892 at 167.179 kb on - strand at 167.221 kb on - strand at 167.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 165,285 + +1.4 166,043 - MPMX19_06891 0.89 +1.4 166,134 + +0.9 166,134 + -1.9 166,134 + +0.3 166,134 + +0.4 166,134 + +0.7 166,135 - +0.5 166,135 - +1.0 166,210 - MPMX19_06892 0.11 -1.0 166,210 - MPMX19_06892 0.11 -1.0 166,210 - MPMX19_06892 0.11 -1.5 166,210 - MPMX19_06892 0.11 -1.7 166,210 - MPMX19_06892 0.11 +0.5 166,210 - MPMX19_06892 0.11 -0.1 166,210 - MPMX19_06892 0.11 -1.0 166,483 - MPMX19_06892 0.42 -0.3 166,483 - MPMX19_06892 0.42 -0.6 166,483 - MPMX19_06892 0.42 -1.0 166,483 - MPMX19_06892 0.42 -2.5 167,179 - +0.3 167,221 - +0.1 167,221 - -1.7
Or see this region's nucleotide sequence