Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06496 and MPMX19_06497 are separated by 30 nucleotides MPMX19_06497 and MPMX19_06498 are separated by 14 nucleotides MPMX19_06498 and MPMX19_06499 are separated by 7 nucleotides
MPMX19_06496: MPMX19_06496 - FAD-dependent urate hydroxylase, at 278,988 to 280,448
_06496
MPMX19_06497: MPMX19_06497 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 280,479 to 281,207
_06497
MPMX19_06498: MPMX19_06498 - Lipopolysaccharide export system ATP-binding protein LptB, at 281,222 to 282,109
_06498
MPMX19_06499: MPMX19_06499 - hypothetical protein, at 282,117 to 283,955
_06499
Position (kb) 281
282
283 Strain fitness (log2 ratio) -2
-1
0
1
2 at 280.413 kb on + strand at 280.413 kb on + strand at 280.413 kb on + strand at 280.413 kb on + strand at 280.414 kb on - strand at 280.504 kb on + strand at 280.505 kb on - strand at 280.505 kb on - strand at 280.583 kb on - strand, within MPMX19_06497 at 280.583 kb on - strand, within MPMX19_06497 at 280.583 kb on - strand, within MPMX19_06497 at 280.855 kb on + strand, within MPMX19_06497 at 280.855 kb on + strand, within MPMX19_06497 at 280.855 kb on + strand, within MPMX19_06497 at 280.855 kb on + strand, within MPMX19_06497 at 280.855 kb on + strand, within MPMX19_06497 at 280.855 kb on + strand, within MPMX19_06497 at 280.891 kb on + strand, within MPMX19_06497 at 280.891 kb on + strand, within MPMX19_06497 at 280.891 kb on + strand, within MPMX19_06497 at 280.891 kb on + strand, within MPMX19_06497 at 280.891 kb on + strand, within MPMX19_06497 at 280.891 kb on + strand, within MPMX19_06497 at 280.892 kb on - strand, within MPMX19_06497 at 281.100 kb on + strand, within MPMX19_06497 at 281.164 kb on + strand at 281.164 kb on + strand at 281.164 kb on + strand at 281.165 kb on - strand at 281.165 kb on - strand at 281.165 kb on - strand at 281.297 kb on - strand at 281.307 kb on + strand at 281.307 kb on + strand at 281.307 kb on + strand at 281.307 kb on + strand at 281.307 kb on + strand at 281.307 kb on + strand at 281.308 kb on - strand at 281.589 kb on + strand, within MPMX19_06498 at 281.589 kb on + strand, within MPMX19_06498 at 281.589 kb on + strand, within MPMX19_06498 at 281.589 kb on + strand, within MPMX19_06498 at 281.589 kb on + strand, within MPMX19_06498 at 281.589 kb on + strand, within MPMX19_06498 at 281.589 kb on + strand, within MPMX19_06498 at 281.590 kb on - strand, within MPMX19_06498 at 281.590 kb on - strand, within MPMX19_06498 at 281.590 kb on - strand, within MPMX19_06498 at 282.178 kb on + strand at 282.179 kb on - strand at 282.193 kb on + strand at 282.193 kb on + strand at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.340 kb on + strand, within MPMX19_06499 at 282.341 kb on - strand, within MPMX19_06499 at 282.341 kb on - strand, within MPMX19_06499 at 282.341 kb on - strand, within MPMX19_06499 at 282.341 kb on - strand, within MPMX19_06499 at 282.341 kb on - strand, within MPMX19_06499 at 282.341 kb on - strand, within MPMX19_06499 at 282.341 kb on - strand, within MPMX19_06499 at 282.347 kb on - strand, within MPMX19_06499 at 282.347 kb on - strand, within MPMX19_06499 at 282.347 kb on - strand, within MPMX19_06499 at 282.415 kb on + strand, within MPMX19_06499 at 282.415 kb on + strand, within MPMX19_06499 at 282.436 kb on + strand, within MPMX19_06499 at 282.553 kb on + strand, within MPMX19_06499 at 282.553 kb on + strand, within MPMX19_06499 at 282.553 kb on + strand, within MPMX19_06499 at 282.553 kb on + strand, within MPMX19_06499 at 282.553 kb on + strand, within MPMX19_06499 at 282.554 kb on - strand, within MPMX19_06499 at 282.554 kb on - strand, within MPMX19_06499 at 282.554 kb on - strand, within MPMX19_06499 at 282.700 kb on + strand, within MPMX19_06499 at 282.700 kb on + strand, within MPMX19_06499 at 282.700 kb on + strand, within MPMX19_06499 at 282.700 kb on + strand, within MPMX19_06499 at 282.700 kb on + strand, within MPMX19_06499 at 282.700 kb on + strand, within MPMX19_06499 at 282.700 kb on + strand, within MPMX19_06499 at 282.700 kb on + strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.701 kb on - strand, within MPMX19_06499 at 282.728 kb on - strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.826 kb on + strand, within MPMX19_06499 at 282.827 kb on - strand, within MPMX19_06499 at 282.827 kb on - strand, within MPMX19_06499 at 282.827 kb on - strand, within MPMX19_06499 at 282.827 kb on - strand, within MPMX19_06499 at 282.827 kb on - strand, within MPMX19_06499 at 282.827 kb on - strand, within MPMX19_06499 at 282.916 kb on + strand, within MPMX19_06499 at 282.916 kb on + strand, within MPMX19_06499 at 282.916 kb on + strand, within MPMX19_06499 at 282.917 kb on - strand, within MPMX19_06499 at 282.917 kb on - strand, within MPMX19_06499 at 282.917 kb on - strand, within MPMX19_06499 at 282.917 kb on - strand, within MPMX19_06499 at 282.917 kb on - strand, within MPMX19_06499 at 282.917 kb on - strand, within MPMX19_06499 at 282.949 kb on + strand, within MPMX19_06499 at 282.949 kb on + strand, within MPMX19_06499 at 282.950 kb on - strand, within MPMX19_06499 at 282.950 kb on - strand, within MPMX19_06499 at 282.950 kb on - strand, within MPMX19_06499 at 282.950 kb on - strand, within MPMX19_06499 at 282.950 kb on - strand, within MPMX19_06499
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 280,413 + -0.9 280,413 + +0.3 280,413 + -0.6 280,413 + -0.3 280,414 - -0.1 280,504 + -0.3 280,505 - -2.7 280,505 - +0.3 280,583 - MPMX19_06497 0.14 +0.3 280,583 - MPMX19_06497 0.14 -0.1 280,583 - MPMX19_06497 0.14 +0.5 280,855 + MPMX19_06497 0.52 -0.0 280,855 + MPMX19_06497 0.52 +1.2 280,855 + MPMX19_06497 0.52 -1.1 280,855 + MPMX19_06497 0.52 -1.0 280,855 + MPMX19_06497 0.52 -1.3 280,855 + MPMX19_06497 0.52 -2.0 280,891 + MPMX19_06497 0.57 -0.7 280,891 + MPMX19_06497 0.57 -0.1 280,891 + MPMX19_06497 0.57 +0.1 280,891 + MPMX19_06497 0.57 -0.5 280,891 + MPMX19_06497 0.57 -0.1 280,891 + MPMX19_06497 0.57 +1.1 280,892 - MPMX19_06497 0.57 +0.9 281,100 + MPMX19_06497 0.85 +0.3 281,164 + -0.4 281,164 + -0.1 281,164 + -1.2 281,165 - +1.4 281,165 - -0.8 281,165 - -0.1 281,297 - +0.2 281,307 + +0.3 281,307 + -0.1 281,307 + +0.7 281,307 + +0.9 281,307 + -0.1 281,307 + -1.5 281,308 - +0.2 281,589 + MPMX19_06498 0.41 +0.7 281,589 + MPMX19_06498 0.41 +0.3 281,589 + MPMX19_06498 0.41 -1.5 281,589 + MPMX19_06498 0.41 -0.9 281,589 + MPMX19_06498 0.41 +0.3 281,589 + MPMX19_06498 0.41 -0.1 281,589 + MPMX19_06498 0.41 -1.6 281,590 - MPMX19_06498 0.41 +1.0 281,590 - MPMX19_06498 0.41 -1.1 281,590 - MPMX19_06498 0.41 -1.2 282,178 + +0.3 282,179 - -1.0 282,193 + -1.0 282,193 + -0.1 282,340 + MPMX19_06499 0.12 +2.5 282,340 + MPMX19_06499 0.12 -0.7 282,340 + MPMX19_06499 0.12 +0.4 282,340 + MPMX19_06499 0.12 +0.4 282,340 + MPMX19_06499 0.12 +0.7 282,340 + MPMX19_06499 0.12 +1.3 282,340 + MPMX19_06499 0.12 +0.2 282,340 + MPMX19_06499 0.12 -0.5 282,340 + MPMX19_06499 0.12 +0.2 282,340 + MPMX19_06499 0.12 -0.8 282,340 + MPMX19_06499 0.12 +1.3 282,340 + MPMX19_06499 0.12 -1.3 282,340 + MPMX19_06499 0.12 -1.7 282,340 + MPMX19_06499 0.12 -2.1 282,341 - MPMX19_06499 0.12 -0.2 282,341 - MPMX19_06499 0.12 +1.5 282,341 - MPMX19_06499 0.12 +0.6 282,341 - MPMX19_06499 0.12 +0.6 282,341 - MPMX19_06499 0.12 -0.5 282,341 - MPMX19_06499 0.12 -0.7 282,341 - MPMX19_06499 0.12 -1.8 282,347 - MPMX19_06499 0.13 +0.2 282,347 - MPMX19_06499 0.13 -0.9 282,347 - MPMX19_06499 0.13 -0.5 282,415 + MPMX19_06499 0.16 -0.5 282,415 + MPMX19_06499 0.16 +0.1 282,436 + MPMX19_06499 0.17 -1.9 282,553 + MPMX19_06499 0.24 -0.1 282,553 + MPMX19_06499 0.24 +0.6 282,553 + MPMX19_06499 0.24 +0.1 282,553 + MPMX19_06499 0.24 -0.4 282,553 + MPMX19_06499 0.24 +0.9 282,554 - MPMX19_06499 0.24 -0.8 282,554 - MPMX19_06499 0.24 -0.5 282,554 - MPMX19_06499 0.24 +0.3 282,700 + MPMX19_06499 0.32 -1.5 282,700 + MPMX19_06499 0.32 +0.1 282,700 + MPMX19_06499 0.32 +0.1 282,700 + MPMX19_06499 0.32 -0.0 282,700 + MPMX19_06499 0.32 -1.4 282,700 + MPMX19_06499 0.32 -0.6 282,700 + MPMX19_06499 0.32 +0.3 282,700 + MPMX19_06499 0.32 -0.2 282,701 - MPMX19_06499 0.32 +0.4 282,701 - MPMX19_06499 0.32 +0.1 282,701 - MPMX19_06499 0.32 +0.6 282,701 - MPMX19_06499 0.32 +0.1 282,701 - MPMX19_06499 0.32 +1.1 282,701 - MPMX19_06499 0.32 -0.2 282,701 - MPMX19_06499 0.32 +0.7 282,701 - MPMX19_06499 0.32 -0.7 282,701 - MPMX19_06499 0.32 -0.8 282,701 - MPMX19_06499 0.32 -0.6 282,701 - MPMX19_06499 0.32 -0.8 282,728 - MPMX19_06499 0.33 +1.0 282,826 + MPMX19_06499 0.39 -0.1 282,826 + MPMX19_06499 0.39 +0.0 282,826 + MPMX19_06499 0.39 -1.8 282,826 + MPMX19_06499 0.39 -0.1 282,826 + MPMX19_06499 0.39 +0.9 282,826 + MPMX19_06499 0.39 -0.7 282,826 + MPMX19_06499 0.39 -1.0 282,826 + MPMX19_06499 0.39 -0.7 282,826 + MPMX19_06499 0.39 -0.9 282,826 + MPMX19_06499 0.39 -0.6 282,826 + MPMX19_06499 0.39 +0.4 282,827 - MPMX19_06499 0.39 -1.4 282,827 - MPMX19_06499 0.39 +1.3 282,827 - MPMX19_06499 0.39 +0.5 282,827 - MPMX19_06499 0.39 +1.1 282,827 - MPMX19_06499 0.39 -2.0 282,827 - MPMX19_06499 0.39 -1.0 282,916 + MPMX19_06499 0.43 +0.9 282,916 + MPMX19_06499 0.43 +0.6 282,916 + MPMX19_06499 0.43 +1.4 282,917 - MPMX19_06499 0.44 -1.3 282,917 - MPMX19_06499 0.44 -0.2 282,917 - MPMX19_06499 0.44 -0.4 282,917 - MPMX19_06499 0.44 +0.1 282,917 - MPMX19_06499 0.44 -0.5 282,917 - MPMX19_06499 0.44 +0.3 282,949 + MPMX19_06499 0.45 -0.9 282,949 + MPMX19_06499 0.45 -0.8 282,950 - MPMX19_06499 0.45 +0.9 282,950 - MPMX19_06499 0.45 -0.4 282,950 - MPMX19_06499 0.45 +0.3 282,950 - MPMX19_06499 0.45 -0.3 282,950 - MPMX19_06499 0.45 +0.4
Or see this region's nucleotide sequence