Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06496

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06495 and MPMX19_06496 overlap by 4 nucleotidesMPMX19_06496 and MPMX19_06497 are separated by 30 nucleotidesMPMX19_06497 and MPMX19_06498 are separated by 14 nucleotides MPMX19_06495: MPMX19_06495 - hypothetical protein, at 277,906 to 278,991 _06495 MPMX19_06496: MPMX19_06496 - FAD-dependent urate hydroxylase, at 278,988 to 280,448 _06496 MPMX19_06497: MPMX19_06497 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 280,479 to 281,207 _06497 MPMX19_06498: MPMX19_06498 - Lipopolysaccharide export system ATP-binding protein LptB, at 281,222 to 282,109 _06498 Position (kb) 278 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2at 278.195 kb on + strand, within MPMX19_06495at 278.195 kb on + strand, within MPMX19_06495at 278.196 kb on - strand, within MPMX19_06495at 278.196 kb on - strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.270 kb on + strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.271 kb on - strand, within MPMX19_06495at 278.303 kb on - strand, within MPMX19_06495at 278.303 kb on - strand, within MPMX19_06495at 278.303 kb on - strand, within MPMX19_06495at 278.568 kb on - strand, within MPMX19_06495at 278.568 kb on - strand, within MPMX19_06495at 278.568 kb on - strand, within MPMX19_06495at 278.677 kb on - strand, within MPMX19_06495at 278.738 kb on + strand, within MPMX19_06495at 278.738 kb on + strand, within MPMX19_06495at 279.074 kb on - strandat 279.074 kb on - strandat 279.074 kb on - strandat 279.074 kb on - strandat 279.074 kb on - strandat 279.555 kb on - strand, within MPMX19_06496at 279.555 kb on - strand, within MPMX19_06496at 279.555 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.566 kb on - strand, within MPMX19_06496at 279.566 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 280.119 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.413 kb on + strandat 280.413 kb on + strandat 280.413 kb on + strandat 280.413 kb on + strandat 280.414 kb on - strandat 280.504 kb on + strandat 280.505 kb on - strandat 280.505 kb on - strandat 280.583 kb on - strand, within MPMX19_06497at 280.583 kb on - strand, within MPMX19_06497at 280.583 kb on - strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.892 kb on - strand, within MPMX19_06497at 281.100 kb on + strand, within MPMX19_06497at 281.164 kb on + strandat 281.164 kb on + strandat 281.164 kb on + strandat 281.165 kb on - strandat 281.165 kb on - strandat 281.165 kb on - strandat 281.297 kb on - strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.308 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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278,195 + MPMX19_06495 0.27 +1.4
278,195 + MPMX19_06495 0.27 -0.0
278,196 - MPMX19_06495 0.27 -1.1
278,196 - MPMX19_06495 0.27 -0.3
278,270 + MPMX19_06495 0.34 +0.2
278,270 + MPMX19_06495 0.34 -0.0
278,270 + MPMX19_06495 0.34 -0.5
278,270 + MPMX19_06495 0.34 -1.1
278,270 + MPMX19_06495 0.34 -1.4
278,270 + MPMX19_06495 0.34 -0.7
278,270 + MPMX19_06495 0.34 -0.6
278,270 + MPMX19_06495 0.34 -1.1
278,270 + MPMX19_06495 0.34 -0.7
278,270 + MPMX19_06495 0.34 -0.1
278,270 + MPMX19_06495 0.34 +1.1
278,271 - MPMX19_06495 0.34 -0.9
278,271 - MPMX19_06495 0.34 -1.5
278,271 - MPMX19_06495 0.34 -1.5
278,271 - MPMX19_06495 0.34 +1.2
278,271 - MPMX19_06495 0.34 -0.5
278,271 - MPMX19_06495 0.34 +0.9
278,271 - MPMX19_06495 0.34 +1.4
278,271 - MPMX19_06495 0.34 -1.8
278,303 - MPMX19_06495 0.37 +0.3
278,303 - MPMX19_06495 0.37 +0.3
278,303 - MPMX19_06495 0.37 +1.5
278,568 - MPMX19_06495 0.61 +0.3
278,568 - MPMX19_06495 0.61 -0.8
278,568 - MPMX19_06495 0.61 -0.1
278,677 - MPMX19_06495 0.71 -0.7
278,738 + MPMX19_06495 0.77 +0.5
278,738 + MPMX19_06495 0.77 +0.0
279,074 - -1.7
279,074 - +0.9
279,074 - +1.9
279,074 - -2.0
279,074 - -0.2
279,555 - MPMX19_06496 0.39 -1.5
279,555 - MPMX19_06496 0.39 -1.7
279,555 - MPMX19_06496 0.39 -0.3
279,557 - MPMX19_06496 0.39 +0.9
279,557 - MPMX19_06496 0.39 +0.2
279,557 - MPMX19_06496 0.39 -0.3
279,557 - MPMX19_06496 0.39 -1.3
279,557 - MPMX19_06496 0.39 +1.2
279,557 - MPMX19_06496 0.39 -0.7
279,557 - MPMX19_06496 0.39 -0.0
279,557 - MPMX19_06496 0.39 -0.5
279,566 - MPMX19_06496 0.40 -0.6
279,566 - MPMX19_06496 0.40 +0.2
279,677 - MPMX19_06496 0.47 -1.0
279,677 - MPMX19_06496 0.47 -1.3
279,677 - MPMX19_06496 0.47 +1.9
279,677 - MPMX19_06496 0.47 -0.1
279,677 - MPMX19_06496 0.47 -0.5
279,677 - MPMX19_06496 0.47 -0.1
279,677 - MPMX19_06496 0.47 +0.4
279,677 - MPMX19_06496 0.47 -0.0
279,677 - MPMX19_06496 0.47 +0.9
279,677 - MPMX19_06496 0.47 +0.7
279,677 - MPMX19_06496 0.47 +1.1
279,677 - MPMX19_06496 0.47 +1.3
280,119 + MPMX19_06496 0.77 -2.2
280,171 + MPMX19_06496 0.81 +1.7
280,171 + MPMX19_06496 0.81 -0.7
280,171 + MPMX19_06496 0.81 +1.4
280,171 + MPMX19_06496 0.81 +1.4
280,171 + MPMX19_06496 0.81 -0.2
280,171 + MPMX19_06496 0.81 +0.9
280,172 - MPMX19_06496 0.81 +1.6
280,172 - MPMX19_06496 0.81 -1.5
280,172 - MPMX19_06496 0.81 -0.6
280,172 - MPMX19_06496 0.81 +1.3
280,172 - MPMX19_06496 0.81 -1.0
280,413 + -0.9
280,413 + +0.3
280,413 + -0.6
280,413 + -0.3
280,414 - -0.1
280,504 + -0.3
280,505 - -2.7
280,505 - +0.3
280,583 - MPMX19_06497 0.14 +0.3
280,583 - MPMX19_06497 0.14 -0.1
280,583 - MPMX19_06497 0.14 +0.5
280,855 + MPMX19_06497 0.52 -0.0
280,855 + MPMX19_06497 0.52 +1.2
280,855 + MPMX19_06497 0.52 -1.1
280,855 + MPMX19_06497 0.52 -1.0
280,855 + MPMX19_06497 0.52 -1.3
280,855 + MPMX19_06497 0.52 -2.0
280,891 + MPMX19_06497 0.57 -0.7
280,891 + MPMX19_06497 0.57 -0.1
280,891 + MPMX19_06497 0.57 +0.1
280,891 + MPMX19_06497 0.57 -0.5
280,891 + MPMX19_06497 0.57 -0.1
280,891 + MPMX19_06497 0.57 +1.1
280,892 - MPMX19_06497 0.57 +0.9
281,100 + MPMX19_06497 0.85 +0.3
281,164 + -0.4
281,164 + -0.1
281,164 + -1.2
281,165 - +1.4
281,165 - -0.8
281,165 - -0.1
281,297 - +0.2
281,307 + +0.3
281,307 + -0.1
281,307 + +0.7
281,307 + +0.9
281,307 + -0.1
281,307 + -1.5
281,308 - +0.2

Or see this region's nucleotide sequence