Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06183 and MPMX19_06184 are separated by 226 nucleotides MPMX19_06184 and MPMX19_06185 are separated by 193 nucleotides MPMX19_06185 and MPMX19_06186 are separated by 155 nucleotides
MPMX19_06183: MPMX19_06183 - Phosphoglucosamine mutase, at 372,714 to 374,087
_06183
MPMX19_06184: MPMX19_06184 - hypothetical protein, at 374,314 to 375,471
_06184
MPMX19_06185: MPMX19_06185 - hypothetical protein, at 375,665 to 375,964
_06185
MPMX19_06186: MPMX19_06186 - Flagellar biosynthetic protein FlhB, at 376,120 to 377,202
_06186
Position (kb) 374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 374.110 kb on - strand at 374.275 kb on + strand at 374.275 kb on + strand at 374.275 kb on + strand at 374.275 kb on + strand at 374.276 kb on - strand at 374.276 kb on - strand at 374.276 kb on - strand at 374.276 kb on - strand at 374.276 kb on - strand at 374.315 kb on + strand at 375.637 kb on - strand at 375.666 kb on + strand at 375.666 kb on + strand at 375.666 kb on + strand at 375.666 kb on + strand at 375.667 kb on - strand at 375.667 kb on - strand at 375.667 kb on - strand at 375.667 kb on - strand at 375.667 kb on - strand at 375.949 kb on + strand at 375.949 kb on + strand at 376.002 kb on + strand at 376.012 kb on + strand at 376.012 kb on + strand at 376.013 kb on - strand at 376.013 kb on - strand at 376.098 kb on + strand at 376.098 kb on + strand at 376.098 kb on + strand at 376.098 kb on + strand at 376.098 kb on + strand at 376.098 kb on + strand at 376.098 kb on + strand at 376.099 kb on - strand at 376.099 kb on - strand at 376.099 kb on - strand at 376.099 kb on - strand at 376.099 kb on - strand at 376.099 kb on - strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.160 kb on + strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.161 kb on - strand at 376.187 kb on + strand at 376.187 kb on + strand at 376.187 kb on + strand at 376.187 kb on + strand at 376.187 kb on + strand at 376.188 kb on - strand at 376.188 kb on - strand at 376.188 kb on - strand at 376.188 kb on - strand at 376.361 kb on + strand, within MPMX19_06186 at 376.361 kb on + strand, within MPMX19_06186 at 376.361 kb on + strand, within MPMX19_06186 at 376.361 kb on + strand, within MPMX19_06186 at 376.362 kb on - strand, within MPMX19_06186 at 376.362 kb on - strand, within MPMX19_06186 at 376.362 kb on - strand, within MPMX19_06186 at 376.362 kb on - strand, within MPMX19_06186 at 376.362 kb on - strand, within MPMX19_06186
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 374,110 - -0.6 374,275 + +0.3 374,275 + +1.0 374,275 + -0.4 374,275 + +0.8 374,276 - -0.7 374,276 - +0.7 374,276 - +0.2 374,276 - +0.1 374,276 - +0.6 374,315 + +1.2 375,637 - -1.7 375,666 + -0.5 375,666 + -1.6 375,666 + +0.3 375,666 + -0.5 375,667 - -0.7 375,667 - -0.5 375,667 - -2.1 375,667 - +0.1 375,667 - -0.4 375,949 + -0.9 375,949 + -0.9 376,002 + +0.4 376,012 + -0.8 376,012 + +1.1 376,013 - -0.2 376,013 - +1.2 376,098 + -0.8 376,098 + -0.6 376,098 + +0.4 376,098 + +1.8 376,098 + -1.2 376,098 + -0.8 376,098 + -0.4 376,099 - -1.1 376,099 - -0.6 376,099 - +1.2 376,099 - -1.7 376,099 - -0.6 376,099 - +0.4 376,160 + +0.2 376,160 + -0.8 376,160 + -2.1 376,160 + -0.1 376,160 + +2.4 376,160 + -0.6 376,160 + -0.6 376,160 + +1.3 376,160 + -0.4 376,160 + +0.0 376,160 + -0.1 376,160 + +1.8 376,160 + +0.6 376,160 + -0.6 376,160 + +0.1 376,160 + +2.1 376,160 + +0.5 376,160 + -1.9 376,160 + -0.8 376,160 + +0.8 376,160 + +0.4 376,160 + +0.3 376,160 + -1.1 376,160 + -0.1 376,160 + +0.2 376,161 - -0.2 376,161 - -1.2 376,161 - +0.1 376,161 - -1.8 376,161 - +2.6 376,161 - +0.2 376,161 - -0.5 376,161 - -1.2 376,161 - -0.9 376,161 - -0.9 376,161 - +0.2 376,161 - +0.4 376,161 - -0.6 376,161 - -0.8 376,161 - +0.3 376,161 - +0.2 376,161 - +0.5 376,161 - +0.2 376,161 - -0.8 376,161 - -2.7 376,161 - +0.6 376,161 - -2.8 376,161 - -0.2 376,161 - -0.8 376,161 - +0.0 376,161 - -1.7 376,187 + -0.4 376,187 + +0.0 376,187 + +0.5 376,187 + -0.8 376,187 + +0.8 376,188 - +0.2 376,188 - -2.2 376,188 - +0.6 376,188 - -0.7 376,361 + MPMX19_06186 0.22 -0.6 376,361 + MPMX19_06186 0.22 +0.7 376,361 + MPMX19_06186 0.22 +0.2 376,361 + MPMX19_06186 0.22 -1.2 376,362 - MPMX19_06186 0.22 -1.1 376,362 - MPMX19_06186 0.22 -0.2 376,362 - MPMX19_06186 0.22 +0.2 376,362 - MPMX19_06186 0.22 -1.3 376,362 - MPMX19_06186 0.22 +0.1
Or see this region's nucleotide sequence