Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06178 and MPMX19_06179 overlap by 4 nucleotides MPMX19_06179 and MPMX19_06180 are separated by 115 nucleotides MPMX19_06180 and MPMX19_06181 overlap by 14 nucleotides MPMX19_06181 and MPMX19_06182 are separated by 22 nucleotides
MPMX19_06178: MPMX19_06178 - hypothetical protein, at 368,714 to 369,148
_06178
MPMX19_06179: MPMX19_06179 - putative SURF1-like protein, at 369,145 to 369,930
_06179
MPMX19_06180: MPMX19_06180 - Sensor histidine kinase RegB, at 370,046 to 371,323
_06180
MPMX19_06181: MPMX19_06181 - Photosynthetic apparatus regulatory protein RegA, at 371,310 to 371,864
_06181
MPMX19_06182: MPMX19_06182 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 371,887 to 372,717
_06182
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1
2 at 369.694 kb on + strand, within MPMX19_06179 at 369.694 kb on + strand, within MPMX19_06179 at 369.752 kb on - strand, within MPMX19_06179 at 369.841 kb on + strand, within MPMX19_06179 at 369.969 kb on + strand at 369.970 kb on - strand at 369.989 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.997 kb on + strand at 369.998 kb on - strand at 369.998 kb on - strand at 369.998 kb on - strand at 369.998 kb on - strand at 369.998 kb on - strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 369.999 kb on + strand at 370.000 kb on - strand at 370.000 kb on - strand at 370.000 kb on - strand at 370.000 kb on - strand at 370.000 kb on - strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.001 kb on + strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.002 kb on - strand at 370.310 kb on + strand, within MPMX19_06180 at 370.310 kb on + strand, within MPMX19_06180 at 370.349 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.940 kb on + strand, within MPMX19_06180 at 371.888 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 369,694 + MPMX19_06179 0.70 -2.1 369,694 + MPMX19_06179 0.70 -0.3 369,752 - MPMX19_06179 0.77 -0.9 369,841 + MPMX19_06179 0.89 -0.2 369,969 + -0.6 369,970 - +0.0 369,989 + +0.5 369,997 + -1.5 369,997 + -0.2 369,997 + +0.6 369,997 + +1.8 369,997 + +0.4 369,997 + +0.2 369,997 + +0.9 369,997 + +0.6 369,997 + +1.9 369,997 + +1.4 369,997 + -2.6 369,998 - -0.4 369,998 - -0.2 369,998 - +0.1 369,998 - -2.1 369,998 - -0.5 369,999 + +0.3 369,999 + +0.7 369,999 + -1.1 369,999 + -1.7 369,999 + -0.2 369,999 + -0.1 369,999 + -1.2 369,999 + +0.9 369,999 + -0.2 369,999 + +0.6 369,999 + -0.2 369,999 + +0.7 369,999 + -1.6 369,999 + +0.0 369,999 + +0.4 369,999 + -0.6 369,999 + -1.6 370,000 - +0.2 370,000 - -0.6 370,000 - +1.8 370,000 - -1.2 370,000 - +1.8 370,001 + +1.2 370,001 + +0.6 370,001 + -0.2 370,001 + +0.8 370,001 + -0.4 370,001 + +0.5 370,001 + +1.8 370,001 + -1.2 370,001 + +1.1 370,001 + +0.3 370,001 + -0.6 370,001 + +0.1 370,001 + -0.6 370,001 + +0.4 370,001 + -0.4 370,002 - -1.9 370,002 - +1.2 370,002 - -1.2 370,002 - +1.8 370,002 - -1.6 370,002 - -1.3 370,002 - -0.6 370,002 - -0.6 370,310 + MPMX19_06180 0.21 -1.9 370,310 + MPMX19_06180 0.21 -1.4 370,349 + MPMX19_06180 0.24 -0.2 370,478 + MPMX19_06180 0.34 -0.8 370,478 + MPMX19_06180 0.34 -2.3 370,478 + MPMX19_06180 0.34 -0.0 370,478 + MPMX19_06180 0.34 -0.4 370,940 + MPMX19_06180 0.70 -0.2 371,888 + -1.2
Or see this region's nucleotide sequence