Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06101 and MPMX19_06102 are separated by 228 nucleotides MPMX19_06102 and MPMX19_06103 are separated by 52 nucleotides MPMX19_06103 and MPMX19_06104 overlap by 4 nucleotides
MPMX19_06101: MPMX19_06101 - hypothetical protein, at 283,656 to 284,546
_06101
MPMX19_06102: MPMX19_06102 - Membrane-bound lytic murein transglycosylase C, at 284,775 to 287,072
_06102
MPMX19_06103: MPMX19_06103 - Molybdenum cofactor biosynthesis protein B, at 287,125 to 287,661
_06103
MPMX19_06104: MPMX19_06104 - hypothetical protein, at 287,658 to 288,674
_06104
Position (kb) 284
285
286
287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 284.591 kb on + strand at 284.591 kb on + strand at 284.591 kb on + strand at 284.591 kb on + strand at 284.591 kb on + strand at 284.592 kb on - strand at 284.691 kb on + strand at 284.691 kb on + strand at 284.692 kb on - strand at 284.692 kb on - strand at 284.763 kb on + strand at 284.803 kb on - strand at 284.868 kb on + strand at 284.868 kb on + strand at 284.868 kb on + strand at 284.869 kb on - strand at 285.334 kb on - strand, within MPMX19_06102 at 285.351 kb on + strand, within MPMX19_06102 at 285.352 kb on - strand, within MPMX19_06102 at 285.741 kb on + strand, within MPMX19_06102 at 285.742 kb on - strand, within MPMX19_06102 at 285.778 kb on - strand, within MPMX19_06102 at 285.778 kb on - strand, within MPMX19_06102 at 285.781 kb on - strand, within MPMX19_06102 at 285.947 kb on + strand, within MPMX19_06102 at 286.068 kb on + strand, within MPMX19_06102 at 286.068 kb on + strand, within MPMX19_06102 at 286.068 kb on + strand, within MPMX19_06102 at 286.068 kb on + strand, within MPMX19_06102 at 286.069 kb on - strand, within MPMX19_06102 at 286.360 kb on - strand, within MPMX19_06102 at 286.788 kb on + strand, within MPMX19_06102 at 286.822 kb on - strand, within MPMX19_06102 at 286.822 kb on - strand, within MPMX19_06102 at 286.887 kb on + strand at 286.887 kb on + strand at 286.887 kb on + strand at 286.887 kb on + strand at 286.887 kb on + strand at 286.887 kb on + strand at 286.887 kb on + strand at 286.888 kb on - strand at 286.888 kb on - strand at 286.888 kb on - strand at 286.888 kb on - strand at 286.888 kb on - strand at 286.888 kb on - strand at 286.888 kb on - strand at 286.889 kb on + strand at 286.889 kb on + strand at 286.890 kb on - strand at 286.890 kb on - strand at 286.890 kb on - strand at 287.413 kb on + strand, within MPMX19_06103 at 287.413 kb on + strand, within MPMX19_06103 at 287.413 kb on + strand, within MPMX19_06103 at 287.413 kb on + strand, within MPMX19_06103 at 287.413 kb on + strand, within MPMX19_06103 at 287.414 kb on - strand, within MPMX19_06103 at 287.414 kb on - strand, within MPMX19_06103 at 287.414 kb on - strand, within MPMX19_06103 at 287.452 kb on + strand, within MPMX19_06103 at 287.452 kb on + strand, within MPMX19_06103 at 287.453 kb on - strand, within MPMX19_06103 at 287.453 kb on - strand, within MPMX19_06103 at 287.453 kb on - strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.461 kb on + strand, within MPMX19_06103 at 287.462 kb on - strand, within MPMX19_06103 at 287.462 kb on - strand, within MPMX19_06103 at 287.462 kb on - strand, within MPMX19_06103 at 287.462 kb on - strand, within MPMX19_06103 at 287.462 kb on - strand, within MPMX19_06103 at 287.462 kb on - strand, within MPMX19_06103 at 287.462 kb on - strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.524 kb on + strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.525 kb on - strand, within MPMX19_06103 at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.652 kb on + strand at 287.653 kb on - strand at 287.653 kb on - strand at 287.653 kb on - strand at 287.653 kb on - strand at 287.653 kb on - strand at 287.653 kb on - strand at 287.653 kb on - strand at 288.066 kb on + strand, within MPMX19_06104 at 288.066 kb on + strand, within MPMX19_06104 at 288.066 kb on + strand, within MPMX19_06104 at 288.067 kb on - strand, within MPMX19_06104 at 288.067 kb on - strand, within MPMX19_06104 at 288.067 kb on - strand, within MPMX19_06104 at 288.067 kb on - strand, within MPMX19_06104
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 284,591 + -0.6 284,591 + +0.8 284,591 + -0.2 284,591 + -0.8 284,591 + -1.7 284,592 - +1.2 284,691 + +0.3 284,691 + +0.0 284,692 - -0.2 284,692 - -1.1 284,763 + -1.4 284,803 - -0.2 284,868 + -1.4 284,868 + +0.4 284,868 + -0.2 284,869 - -0.6 285,334 - MPMX19_06102 0.24 +0.0 285,351 + MPMX19_06102 0.25 -1.1 285,352 - MPMX19_06102 0.25 +0.2 285,741 + MPMX19_06102 0.42 -1.6 285,742 - MPMX19_06102 0.42 -1.6 285,778 - MPMX19_06102 0.44 -0.4 285,778 - MPMX19_06102 0.44 +0.0 285,781 - MPMX19_06102 0.44 +1.0 285,947 + MPMX19_06102 0.51 +0.6 286,068 + MPMX19_06102 0.56 -2.4 286,068 + MPMX19_06102 0.56 +0.5 286,068 + MPMX19_06102 0.56 -0.9 286,068 + MPMX19_06102 0.56 -1.4 286,069 - MPMX19_06102 0.56 +0.2 286,360 - MPMX19_06102 0.69 -0.1 286,788 + MPMX19_06102 0.88 -0.2 286,822 - MPMX19_06102 0.89 -0.6 286,822 - MPMX19_06102 0.89 -1.2 286,887 + -0.6 286,887 + +0.6 286,887 + -1.1 286,887 + -1.4 286,887 + -0.2 286,887 + -2.1 286,887 + -1.2 286,888 - -0.2 286,888 - -1.1 286,888 - -1.2 286,888 - -0.4 286,888 - +0.2 286,888 - +0.8 286,888 - -0.8 286,889 + -0.1 286,889 + -1.9 286,890 - +1.2 286,890 - +2.1 286,890 - +0.3 287,413 + MPMX19_06103 0.54 +0.1 287,413 + MPMX19_06103 0.54 +0.3 287,413 + MPMX19_06103 0.54 -2.9 287,413 + MPMX19_06103 0.54 -1.2 287,413 + MPMX19_06103 0.54 +1.3 287,414 - MPMX19_06103 0.54 -0.4 287,414 - MPMX19_06103 0.54 -0.1 287,414 - MPMX19_06103 0.54 -0.0 287,452 + MPMX19_06103 0.61 -0.4 287,452 + MPMX19_06103 0.61 -1.8 287,453 - MPMX19_06103 0.61 -1.4 287,453 - MPMX19_06103 0.61 -0.6 287,453 - MPMX19_06103 0.61 -0.2 287,461 + MPMX19_06103 0.63 -1.7 287,461 + MPMX19_06103 0.63 -0.9 287,461 + MPMX19_06103 0.63 -1.9 287,461 + MPMX19_06103 0.63 -0.1 287,461 + MPMX19_06103 0.63 +1.8 287,461 + MPMX19_06103 0.63 -0.2 287,461 + MPMX19_06103 0.63 +0.6 287,461 + MPMX19_06103 0.63 -0.6 287,461 + MPMX19_06103 0.63 +0.2 287,461 + MPMX19_06103 0.63 -1.4 287,461 + MPMX19_06103 0.63 +0.2 287,462 - MPMX19_06103 0.63 +0.5 287,462 - MPMX19_06103 0.63 -0.8 287,462 - MPMX19_06103 0.63 -0.1 287,462 - MPMX19_06103 0.63 +0.8 287,462 - MPMX19_06103 0.63 -1.8 287,462 - MPMX19_06103 0.63 +0.2 287,462 - MPMX19_06103 0.63 -0.6 287,524 + MPMX19_06103 0.74 +0.4 287,524 + MPMX19_06103 0.74 -1.4 287,524 + MPMX19_06103 0.74 -0.4 287,524 + MPMX19_06103 0.74 +0.6 287,524 + MPMX19_06103 0.74 -0.1 287,524 + MPMX19_06103 0.74 -2.1 287,524 + MPMX19_06103 0.74 +0.4 287,524 + MPMX19_06103 0.74 -0.3 287,524 + MPMX19_06103 0.74 -1.2 287,524 + MPMX19_06103 0.74 -2.0 287,524 + MPMX19_06103 0.74 -2.1 287,524 + MPMX19_06103 0.74 -0.1 287,524 + MPMX19_06103 0.74 -0.3 287,524 + MPMX19_06103 0.74 -0.1 287,524 + MPMX19_06103 0.74 -1.1 287,524 + MPMX19_06103 0.74 -1.0 287,525 - MPMX19_06103 0.74 +0.9 287,525 - MPMX19_06103 0.74 +1.6 287,525 - MPMX19_06103 0.74 -0.6 287,525 - MPMX19_06103 0.74 -0.8 287,525 - MPMX19_06103 0.74 -0.8 287,525 - MPMX19_06103 0.74 -1.6 287,525 - MPMX19_06103 0.74 -1.5 287,525 - MPMX19_06103 0.74 -0.7 287,525 - MPMX19_06103 0.74 +0.2 287,525 - MPMX19_06103 0.74 +0.6 287,525 - MPMX19_06103 0.74 +0.3 287,525 - MPMX19_06103 0.74 -0.3 287,652 + -1.2 287,652 + -0.0 287,652 + -0.2 287,652 + -0.0 287,652 + +0.7 287,652 + -0.6 287,652 + -2.4 287,652 + +0.8 287,652 + +0.0 287,653 - +1.5 287,653 - -0.2 287,653 - +0.8 287,653 - +0.5 287,653 - -0.5 287,653 - -0.2 287,653 - -0.2 288,066 + MPMX19_06104 0.40 +0.7 288,066 + MPMX19_06104 0.40 -0.1 288,066 + MPMX19_06104 0.40 +0.9 288,067 - MPMX19_06104 0.40 -0.5 288,067 - MPMX19_06104 0.40 -0.1 288,067 - MPMX19_06104 0.40 -0.8 288,067 - MPMX19_06104 0.40 -2.1
Or see this region's nucleotide sequence