Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05981 and MPMX19_05982 are separated by 200 nucleotides MPMX19_05982 and MPMX19_05983 are separated by 141 nucleotides
MPMX19_05981: MPMX19_05981 - hypothetical protein, at 135,843 to 137,051
_05981
MPMX19_05982: MPMX19_05982 - hypothetical protein, at 137,252 to 138,097
_05982
MPMX19_05983: MPMX19_05983 - Methylamine utilization protein MauG, at 138,239 to 139,399
_05983
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.360 kb on + strand, within MPMX19_05981 at 136.360 kb on + strand, within MPMX19_05981 at 136.360 kb on + strand, within MPMX19_05981 at 136.360 kb on + strand, within MPMX19_05981 at 136.360 kb on + strand, within MPMX19_05981 at 136.360 kb on + strand, within MPMX19_05981 at 136.360 kb on + strand, within MPMX19_05981 at 136.360 kb on + strand, within MPMX19_05981 at 136.360 kb on + strand, within MPMX19_05981 at 136.360 kb on + strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.361 kb on - strand, within MPMX19_05981 at 136.456 kb on + strand, within MPMX19_05981 at 136.456 kb on + strand, within MPMX19_05981 at 136.456 kb on + strand, within MPMX19_05981 at 136.456 kb on + strand, within MPMX19_05981 at 136.457 kb on - strand, within MPMX19_05981 at 136.471 kb on + strand, within MPMX19_05981 at 136.471 kb on + strand, within MPMX19_05981 at 136.471 kb on + strand, within MPMX19_05981 at 136.471 kb on + strand, within MPMX19_05981 at 136.471 kb on + strand, within MPMX19_05981 at 136.472 kb on - strand, within MPMX19_05981 at 136.472 kb on - strand, within MPMX19_05981 at 136.472 kb on - strand, within MPMX19_05981 at 136.472 kb on - strand, within MPMX19_05981 at 136.492 kb on + strand, within MPMX19_05981 at 136.492 kb on + strand, within MPMX19_05981 at 136.493 kb on - strand, within MPMX19_05981 at 136.493 kb on - strand, within MPMX19_05981 at 136.493 kb on - strand, within MPMX19_05981 at 136.493 kb on - strand, within MPMX19_05981 at 136.493 kb on - strand, within MPMX19_05981 at 136.651 kb on + strand, within MPMX19_05981 at 136.651 kb on + strand, within MPMX19_05981 at 136.651 kb on + strand, within MPMX19_05981 at 136.652 kb on - strand, within MPMX19_05981 at 136.652 kb on - strand, within MPMX19_05981 at 136.652 kb on - strand, within MPMX19_05981 at 136.652 kb on - strand, within MPMX19_05981 at 136.652 kb on - strand, within MPMX19_05981 at 136.660 kb on + strand, within MPMX19_05981 at 136.660 kb on + strand, within MPMX19_05981 at 136.661 kb on - strand, within MPMX19_05981 at 136.669 kb on + strand, within MPMX19_05981 at 136.669 kb on + strand, within MPMX19_05981 at 136.669 kb on + strand, within MPMX19_05981 at 136.669 kb on + strand, within MPMX19_05981 at 136.670 kb on - strand, within MPMX19_05981 at 136.670 kb on - strand, within MPMX19_05981 at 136.670 kb on - strand, within MPMX19_05981 at 136.670 kb on - strand, within MPMX19_05981 at 136.792 kb on + strand, within MPMX19_05981 at 136.792 kb on + strand, within MPMX19_05981 at 136.792 kb on + strand, within MPMX19_05981 at 136.792 kb on + strand, within MPMX19_05981 at 136.792 kb on + strand, within MPMX19_05981 at 136.793 kb on - strand, within MPMX19_05981 at 136.793 kb on - strand, within MPMX19_05981 at 136.793 kb on - strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.834 kb on + strand, within MPMX19_05981 at 136.835 kb on - strand, within MPMX19_05981 at 136.835 kb on - strand, within MPMX19_05981 at 136.835 kb on - strand, within MPMX19_05981 at 136.835 kb on - strand, within MPMX19_05981 at 136.835 kb on - strand, within MPMX19_05981 at 136.835 kb on - strand, within MPMX19_05981 at 136.835 kb on - strand, within MPMX19_05981 at 136.873 kb on + strand, within MPMX19_05981 at 136.873 kb on + strand, within MPMX19_05981 at 136.873 kb on + strand, within MPMX19_05981 at 136.873 kb on + strand, within MPMX19_05981 at 136.873 kb on + strand, within MPMX19_05981 at 136.873 kb on + strand, within MPMX19_05981 at 136.874 kb on - strand, within MPMX19_05981 at 136.874 kb on - strand, within MPMX19_05981 at 136.874 kb on - strand, within MPMX19_05981 at 136.874 kb on - strand, within MPMX19_05981 at 136.909 kb on + strand, within MPMX19_05981 at 136.909 kb on + strand, within MPMX19_05981 at 136.909 kb on + strand, within MPMX19_05981 at 136.910 kb on - strand, within MPMX19_05981 at 137.051 kb on + strand at 137.052 kb on - strand at 137.210 kb on + strand at 137.211 kb on - strand at 137.211 kb on - strand at 137.211 kb on - strand at 137.606 kb on + strand, within MPMX19_05982 at 137.606 kb on + strand, within MPMX19_05982 at 137.606 kb on + strand, within MPMX19_05982 at 137.607 kb on - strand, within MPMX19_05982 at 137.607 kb on - strand, within MPMX19_05982 at 137.607 kb on - strand, within MPMX19_05982 at 137.696 kb on + strand, within MPMX19_05982 at 137.777 kb on + strand, within MPMX19_05982 at 138.082 kb on - strand at 138.183 kb on + strand at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.527 kb on + strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.528 kb on - strand, within MPMX19_05983 at 138.708 kb on - strand, within MPMX19_05983 at 138.708 kb on - strand, within MPMX19_05983 at 138.708 kb on - strand, within MPMX19_05983 at 138.732 kb on - strand, within MPMX19_05983 at 138.768 kb on - strand, within MPMX19_05983 at 138.768 kb on - strand, within MPMX19_05983 at 138.768 kb on - strand, within MPMX19_05983 at 138.768 kb on - strand, within MPMX19_05983 at 138.768 kb on - strand, within MPMX19_05983 at 138.768 kb on - strand, within MPMX19_05983 at 138.768 kb on - strand, within MPMX19_05983 at 138.768 kb on - strand, within MPMX19_05983 at 138.768 kb on - strand, within MPMX19_05983 at 138.836 kb on + strand, within MPMX19_05983 at 138.836 kb on + strand, within MPMX19_05983 at 138.836 kb on + strand, within MPMX19_05983 at 138.836 kb on + strand, within MPMX19_05983 at 138.837 kb on - strand, within MPMX19_05983 at 138.837 kb on - strand, within MPMX19_05983 at 138.860 kb on + strand, within MPMX19_05983 at 138.860 kb on + strand, within MPMX19_05983 at 138.860 kb on + strand, within MPMX19_05983 at 138.860 kb on + strand, within MPMX19_05983 at 138.860 kb on + strand, within MPMX19_05983 at 138.860 kb on + strand, within MPMX19_05983 at 138.860 kb on + strand, within MPMX19_05983 at 138.860 kb on + strand, within MPMX19_05983 at 138.861 kb on - strand, within MPMX19_05983 at 138.861 kb on - strand, within MPMX19_05983 at 138.983 kb on + strand, within MPMX19_05983 at 138.983 kb on + strand, within MPMX19_05983 at 138.983 kb on + strand, within MPMX19_05983 at 138.983 kb on + strand, within MPMX19_05983 at 138.983 kb on + strand, within MPMX19_05983 at 138.983 kb on + strand, within MPMX19_05983 at 138.983 kb on + strand, within MPMX19_05983 at 138.983 kb on + strand, within MPMX19_05983 at 138.983 kb on + strand, within MPMX19_05983 at 138.984 kb on - strand, within MPMX19_05983 at 138.984 kb on - strand, within MPMX19_05983 at 138.984 kb on - strand, within MPMX19_05983 at 138.984 kb on - strand, within MPMX19_05983 at 138.984 kb on - strand, within MPMX19_05983 at 139.097 kb on + strand, within MPMX19_05983 at 139.097 kb on + strand, within MPMX19_05983 at 139.097 kb on + strand, within MPMX19_05983 at 139.097 kb on + strand, within MPMX19_05983 at 139.097 kb on + strand, within MPMX19_05983 at 139.097 kb on + strand, within MPMX19_05983 at 139.097 kb on + strand, within MPMX19_05983
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 136,360 + MPMX19_05981 0.43 +0.2 136,360 + MPMX19_05981 0.43 -0.4 136,360 + MPMX19_05981 0.43 -0.6 136,360 + MPMX19_05981 0.43 +0.9 136,360 + MPMX19_05981 0.43 -2.3 136,360 + MPMX19_05981 0.43 -0.6 136,360 + MPMX19_05981 0.43 +1.3 136,360 + MPMX19_05981 0.43 -0.1 136,360 + MPMX19_05981 0.43 -0.6 136,360 + MPMX19_05981 0.43 +0.2 136,361 - MPMX19_05981 0.43 -0.9 136,361 - MPMX19_05981 0.43 -0.2 136,361 - MPMX19_05981 0.43 -0.1 136,361 - MPMX19_05981 0.43 +0.2 136,361 - MPMX19_05981 0.43 -0.3 136,361 - MPMX19_05981 0.43 -0.2 136,361 - MPMX19_05981 0.43 -2.2 136,361 - MPMX19_05981 0.43 -0.2 136,361 - MPMX19_05981 0.43 -0.7 136,361 - MPMX19_05981 0.43 +0.6 136,456 + MPMX19_05981 0.51 -0.4 136,456 + MPMX19_05981 0.51 +0.8 136,456 + MPMX19_05981 0.51 -0.7 136,456 + MPMX19_05981 0.51 -0.2 136,457 - MPMX19_05981 0.51 +0.6 136,471 + MPMX19_05981 0.52 -0.6 136,471 + MPMX19_05981 0.52 +0.8 136,471 + MPMX19_05981 0.52 -0.2 136,471 + MPMX19_05981 0.52 -0.8 136,471 + MPMX19_05981 0.52 -1.4 136,472 - MPMX19_05981 0.52 -2.8 136,472 - MPMX19_05981 0.52 +0.2 136,472 - MPMX19_05981 0.52 -0.1 136,472 - MPMX19_05981 0.52 -0.4 136,492 + MPMX19_05981 0.54 -1.5 136,492 + MPMX19_05981 0.54 -0.8 136,493 - MPMX19_05981 0.54 +1.5 136,493 - MPMX19_05981 0.54 +0.4 136,493 - MPMX19_05981 0.54 +0.2 136,493 - MPMX19_05981 0.54 +1.5 136,493 - MPMX19_05981 0.54 -0.4 136,651 + MPMX19_05981 0.67 -0.8 136,651 + MPMX19_05981 0.67 +0.3 136,651 + MPMX19_05981 0.67 -2.2 136,652 - MPMX19_05981 0.67 +0.3 136,652 - MPMX19_05981 0.67 +0.5 136,652 - MPMX19_05981 0.67 +0.1 136,652 - MPMX19_05981 0.67 -0.6 136,652 - MPMX19_05981 0.67 -2.4 136,660 + MPMX19_05981 0.68 +0.2 136,660 + MPMX19_05981 0.68 -1.2 136,661 - MPMX19_05981 0.68 +0.4 136,669 + MPMX19_05981 0.68 -0.1 136,669 + MPMX19_05981 0.68 -0.7 136,669 + MPMX19_05981 0.68 -0.0 136,669 + MPMX19_05981 0.68 -0.6 136,670 - MPMX19_05981 0.68 -0.3 136,670 - MPMX19_05981 0.68 -0.8 136,670 - MPMX19_05981 0.68 +1.3 136,670 - MPMX19_05981 0.68 -1.6 136,792 + MPMX19_05981 0.78 -0.7 136,792 + MPMX19_05981 0.78 +0.1 136,792 + MPMX19_05981 0.78 -1.4 136,792 + MPMX19_05981 0.78 -0.6 136,792 + MPMX19_05981 0.78 -0.9 136,793 - MPMX19_05981 0.79 -0.6 136,793 - MPMX19_05981 0.79 +0.8 136,793 - MPMX19_05981 0.79 -1.0 136,834 + MPMX19_05981 0.82 +0.2 136,834 + MPMX19_05981 0.82 -0.4 136,834 + MPMX19_05981 0.82 -0.8 136,834 + MPMX19_05981 0.82 -1.1 136,834 + MPMX19_05981 0.82 -1.4 136,834 + MPMX19_05981 0.82 +0.8 136,834 + MPMX19_05981 0.82 -0.3 136,834 + MPMX19_05981 0.82 +2.0 136,834 + MPMX19_05981 0.82 +0.8 136,834 + MPMX19_05981 0.82 +0.1 136,834 + MPMX19_05981 0.82 -2.1 136,835 - MPMX19_05981 0.82 -1.2 136,835 - MPMX19_05981 0.82 +0.6 136,835 - MPMX19_05981 0.82 -1.4 136,835 - MPMX19_05981 0.82 -0.8 136,835 - MPMX19_05981 0.82 -0.1 136,835 - MPMX19_05981 0.82 -0.8 136,835 - MPMX19_05981 0.82 +0.3 136,873 + MPMX19_05981 0.85 -1.7 136,873 + MPMX19_05981 0.85 -1.1 136,873 + MPMX19_05981 0.85 -1.6 136,873 + MPMX19_05981 0.85 +0.5 136,873 + MPMX19_05981 0.85 -0.2 136,873 + MPMX19_05981 0.85 +0.8 136,874 - MPMX19_05981 0.85 -0.2 136,874 - MPMX19_05981 0.85 -0.6 136,874 - MPMX19_05981 0.85 -2.7 136,874 - MPMX19_05981 0.85 -1.1 136,909 + MPMX19_05981 0.88 +0.3 136,909 + MPMX19_05981 0.88 +0.2 136,909 + MPMX19_05981 0.88 -1.6 136,910 - MPMX19_05981 0.88 -1.6 137,051 + -1.0 137,052 - -0.4 137,210 + -1.1 137,211 - +0.3 137,211 - +1.6 137,211 - +0.6 137,606 + MPMX19_05982 0.42 -2.1 137,606 + MPMX19_05982 0.42 +0.2 137,606 + MPMX19_05982 0.42 -1.5 137,607 - MPMX19_05982 0.42 -1.8 137,607 - MPMX19_05982 0.42 -1.6 137,607 - MPMX19_05982 0.42 -0.5 137,696 + MPMX19_05982 0.52 -1.1 137,777 + MPMX19_05982 0.62 +0.8 138,082 - -0.9 138,183 + -0.5 138,527 + MPMX19_05983 0.25 -1.2 138,527 + MPMX19_05983 0.25 -1.6 138,527 + MPMX19_05983 0.25 +1.0 138,527 + MPMX19_05983 0.25 -1.4 138,527 + MPMX19_05983 0.25 -0.1 138,527 + MPMX19_05983 0.25 -2.2 138,527 + MPMX19_05983 0.25 +0.2 138,527 + MPMX19_05983 0.25 +0.6 138,527 + MPMX19_05983 0.25 -0.5 138,527 + MPMX19_05983 0.25 +0.0 138,527 + MPMX19_05983 0.25 +0.8 138,527 + MPMX19_05983 0.25 -0.6 138,527 + MPMX19_05983 0.25 +1.3 138,527 + MPMX19_05983 0.25 -1.1 138,527 + MPMX19_05983 0.25 +0.3 138,527 + MPMX19_05983 0.25 -1.4 138,527 + MPMX19_05983 0.25 -1.3 138,527 + MPMX19_05983 0.25 +0.9 138,527 + MPMX19_05983 0.25 -0.2 138,527 + MPMX19_05983 0.25 -1.4 138,527 + MPMX19_05983 0.25 -0.2 138,527 + MPMX19_05983 0.25 -0.2 138,527 + MPMX19_05983 0.25 -1.9 138,528 - MPMX19_05983 0.25 -0.4 138,528 - MPMX19_05983 0.25 -0.7 138,528 - MPMX19_05983 0.25 -1.6 138,528 - MPMX19_05983 0.25 -0.3 138,528 - MPMX19_05983 0.25 -0.8 138,528 - MPMX19_05983 0.25 +0.3 138,528 - MPMX19_05983 0.25 +0.9 138,528 - MPMX19_05983 0.25 -0.7 138,528 - MPMX19_05983 0.25 -1.7 138,528 - MPMX19_05983 0.25 -0.4 138,528 - MPMX19_05983 0.25 -0.8 138,528 - MPMX19_05983 0.25 +0.2 138,528 - MPMX19_05983 0.25 -0.6 138,528 - MPMX19_05983 0.25 -1.4 138,528 - MPMX19_05983 0.25 -0.7 138,528 - MPMX19_05983 0.25 -1.6 138,528 - MPMX19_05983 0.25 -1.1 138,528 - MPMX19_05983 0.25 +0.5 138,528 - MPMX19_05983 0.25 -2.1 138,708 - MPMX19_05983 0.40 -0.4 138,708 - MPMX19_05983 0.40 -1.7 138,708 - MPMX19_05983 0.40 +2.0 138,732 - MPMX19_05983 0.42 -0.5 138,768 - MPMX19_05983 0.46 -0.0 138,768 - MPMX19_05983 0.46 -1.1 138,768 - MPMX19_05983 0.46 -0.6 138,768 - MPMX19_05983 0.46 +0.2 138,768 - MPMX19_05983 0.46 +1.1 138,768 - MPMX19_05983 0.46 -1.4 138,768 - MPMX19_05983 0.46 -0.1 138,768 - MPMX19_05983 0.46 +0.3 138,768 - MPMX19_05983 0.46 +0.3 138,836 + MPMX19_05983 0.51 +0.3 138,836 + MPMX19_05983 0.51 +0.8 138,836 + MPMX19_05983 0.51 -0.7 138,836 + MPMX19_05983 0.51 +0.2 138,837 - MPMX19_05983 0.52 -0.6 138,837 - MPMX19_05983 0.52 -0.6 138,860 + MPMX19_05983 0.53 -1.3 138,860 + MPMX19_05983 0.53 -0.2 138,860 + MPMX19_05983 0.53 -1.7 138,860 + MPMX19_05983 0.53 +0.8 138,860 + MPMX19_05983 0.53 -0.2 138,860 + MPMX19_05983 0.53 -1.4 138,860 + MPMX19_05983 0.53 +0.5 138,860 + MPMX19_05983 0.53 +0.1 138,861 - MPMX19_05983 0.54 +0.2 138,861 - MPMX19_05983 0.54 -0.4 138,983 + MPMX19_05983 0.64 -0.2 138,983 + MPMX19_05983 0.64 +0.2 138,983 + MPMX19_05983 0.64 -0.2 138,983 + MPMX19_05983 0.64 +0.2 138,983 + MPMX19_05983 0.64 +1.8 138,983 + MPMX19_05983 0.64 -1.0 138,983 + MPMX19_05983 0.64 +0.2 138,983 + MPMX19_05983 0.64 -0.4 138,983 + MPMX19_05983 0.64 -0.1 138,984 - MPMX19_05983 0.64 -0.7 138,984 - MPMX19_05983 0.64 -0.2 138,984 - MPMX19_05983 0.64 -0.6 138,984 - MPMX19_05983 0.64 +0.5 138,984 - MPMX19_05983 0.64 +0.2 139,097 + MPMX19_05983 0.74 -0.1 139,097 + MPMX19_05983 0.74 -1.7 139,097 + MPMX19_05983 0.74 -1.7 139,097 + MPMX19_05983 0.74 -1.8 139,097 + MPMX19_05983 0.74 +0.6 139,097 + MPMX19_05983 0.74 +0.2 139,097 + MPMX19_05983 0.74 +0.8
Or see this region's nucleotide sequence