Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05797 and MPMX19_05798 are separated by 250 nucleotides MPMX19_05798 and MPMX19_05799 overlap by 4 nucleotides
MPMX19_05797: MPMX19_05797 - Cyclic-di-GMP-binding biofilm dispersal mediator protein, at 519,974 to 520,687
_05797
MPMX19_05798: MPMX19_05798 - HTH-type transcriptional repressor NanR, at 520,938 to 521,789
_05798
MPMX19_05799: MPMX19_05799 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 521,786 to 522,841
_05799
Position (kb) 520
521
522 Strain fitness (log2 ratio) -2
-1
0
1 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.082 kb on + strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.083 kb on - strand, within MPMX19_05797 at 520.304 kb on + strand, within MPMX19_05797 at 520.410 kb on - strand, within MPMX19_05797 at 520.410 kb on - strand, within MPMX19_05797 at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.616 kb on + strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.617 kb on - strand at 520.716 kb on + strand at 520.716 kb on + strand at 520.716 kb on + strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.717 kb on - strand at 520.893 kb on + strand at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.185 kb on - strand, within MPMX19_05798 at 521.721 kb on + strand at 521.721 kb on + strand at 521.721 kb on + strand at 521.722 kb on - strand at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.276 kb on - strand, within MPMX19_05799 at 522.276 kb on - strand, within MPMX19_05799 at 522.276 kb on - strand, within MPMX19_05799 at 522.476 kb on + strand, within MPMX19_05799 at 522.521 kb on + strand, within MPMX19_05799
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 520,082 + MPMX19_05797 0.15 -0.6 520,082 + MPMX19_05797 0.15 -1.4 520,082 + MPMX19_05797 0.15 -0.4 520,082 + MPMX19_05797 0.15 -0.4 520,082 + MPMX19_05797 0.15 +0.7 520,082 + MPMX19_05797 0.15 -1.1 520,082 + MPMX19_05797 0.15 -0.6 520,082 + MPMX19_05797 0.15 +0.1 520,082 + MPMX19_05797 0.15 -1.7 520,082 + MPMX19_05797 0.15 -0.8 520,083 - MPMX19_05797 0.15 -0.1 520,083 - MPMX19_05797 0.15 +0.5 520,083 - MPMX19_05797 0.15 -0.0 520,083 - MPMX19_05797 0.15 -0.1 520,083 - MPMX19_05797 0.15 +0.3 520,083 - MPMX19_05797 0.15 -0.6 520,083 - MPMX19_05797 0.15 +0.5 520,083 - MPMX19_05797 0.15 -1.3 520,083 - MPMX19_05797 0.15 +0.0 520,083 - MPMX19_05797 0.15 -0.3 520,083 - MPMX19_05797 0.15 -1.1 520,083 - MPMX19_05797 0.15 -0.1 520,083 - MPMX19_05797 0.15 -0.0 520,304 + MPMX19_05797 0.46 +0.4 520,410 - MPMX19_05797 0.61 +0.4 520,410 - MPMX19_05797 0.61 -1.4 520,616 + +0.2 520,616 + +0.1 520,616 + -0.7 520,616 + -0.4 520,616 + +0.4 520,616 + +0.5 520,617 - -1.3 520,617 - -0.0 520,617 - -1.3 520,617 - -1.7 520,617 - +0.2 520,617 - -1.1 520,617 - -0.6 520,617 - +0.6 520,617 - +0.3 520,617 - -0.7 520,617 - +0.3 520,716 + +0.4 520,716 + +0.4 520,716 + +0.6 520,717 - +0.3 520,717 - -1.6 520,717 - -0.8 520,717 - -1.4 520,717 - +0.1 520,893 + -0.8 521,185 - MPMX19_05798 0.29 -1.1 521,185 - MPMX19_05798 0.29 -0.6 521,185 - MPMX19_05798 0.29 -0.2 521,185 - MPMX19_05798 0.29 -1.6 521,185 - MPMX19_05798 0.29 -0.8 521,721 + -0.7 521,721 + -1.1 521,721 + +0.1 521,722 - +0.1 522,272 + MPMX19_05799 0.46 -0.5 522,272 + MPMX19_05799 0.46 +0.1 522,272 + MPMX19_05799 0.46 -0.1 522,272 + MPMX19_05799 0.46 -1.4 522,272 + MPMX19_05799 0.46 -0.7 522,272 + MPMX19_05799 0.46 +1.1 522,272 + MPMX19_05799 0.46 +0.4 522,272 + MPMX19_05799 0.46 -0.9 522,272 + MPMX19_05799 0.46 -1.4 522,272 + MPMX19_05799 0.46 -0.2 522,273 - MPMX19_05799 0.46 -0.4 522,273 - MPMX19_05799 0.46 -0.0 522,273 - MPMX19_05799 0.46 -1.1 522,273 - MPMX19_05799 0.46 +0.3 522,273 - MPMX19_05799 0.46 -1.3 522,273 - MPMX19_05799 0.46 -0.3 522,273 - MPMX19_05799 0.46 +0.0 522,273 - MPMX19_05799 0.46 +1.0 522,273 - MPMX19_05799 0.46 +0.9 522,273 - MPMX19_05799 0.46 -0.3 522,273 - MPMX19_05799 0.46 -0.0 522,273 - MPMX19_05799 0.46 -1.5 522,273 - MPMX19_05799 0.46 -0.8 522,275 + MPMX19_05799 0.46 -0.3 522,275 + MPMX19_05799 0.46 -0.2 522,275 + MPMX19_05799 0.46 -1.2 522,275 + MPMX19_05799 0.46 -0.5 522,275 + MPMX19_05799 0.46 -0.8 522,275 + MPMX19_05799 0.46 -0.5 522,276 - MPMX19_05799 0.46 +1.1 522,276 - MPMX19_05799 0.46 +0.5 522,276 - MPMX19_05799 0.46 -1.2 522,476 + MPMX19_05799 0.65 -2.7 522,521 + MPMX19_05799 0.70 -0.3
Or see this region's nucleotide sequence