Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05679 and MPMX19_05680 are separated by 268 nucleotides MPMX19_05680 and MPMX19_05681 are separated by 257 nucleotides MPMX19_05681 and MPMX19_05682 are separated by 113 nucleotides MPMX19_05682 and MPMX19_05683 are separated by 48 nucleotides
MPMX19_05679: MPMX19_05679 - Flagellum-specific ATP synthase, at 396,808 to 398,145
_05679
MPMX19_05680: MPMX19_05680 - Cell cycle response regulator CtrA, at 398,414 to 399,154
_05680
MPMX19_05681: MPMX19_05681 - Cold shock protein CspA, at 399,412 to 399,621
_05681
MPMX19_05682: MPMX19_05682 - hypothetical protein, at 399,735 to 399,947
_05682
MPMX19_05683: MPMX19_05683 - hypothetical protein, at 399,996 to 400,220
_05683
Position (kb) 398
399
400 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 398.155 kb on - strand at 398.199 kb on + strand at 398.199 kb on + strand at 398.199 kb on + strand at 398.199 kb on + strand at 398.200 kb on - strand at 398.200 kb on - strand at 398.202 kb on + strand at 398.202 kb on + strand at 398.202 kb on + strand at 398.202 kb on + strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.209 kb on + strand at 398.209 kb on + strand at 398.209 kb on + strand at 398.210 kb on - strand at 398.268 kb on - strand at 398.277 kb on + strand at 398.277 kb on + strand at 398.277 kb on + strand at 398.277 kb on + strand at 398.277 kb on + strand at 398.278 kb on - strand at 398.278 kb on - strand at 398.278 kb on - strand at 398.297 kb on + strand at 398.297 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.315 kb on - strand at 398.315 kb on - strand at 398.324 kb on - strand at 398.540 kb on + strand, within MPMX19_05680 at 398.540 kb on + strand, within MPMX19_05680 at 398.591 kb on + strand, within MPMX19_05680 at 398.705 kb on + strand, within MPMX19_05680 at 398.814 kb on + strand, within MPMX19_05680 at 398.814 kb on + strand, within MPMX19_05680 at 398.814 kb on + strand, within MPMX19_05680 at 398.876 kb on + strand, within MPMX19_05680 at 398.877 kb on - strand, within MPMX19_05680 at 398.948 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.068 kb on + strand, within MPMX19_05680 at 399.068 kb on + strand, within MPMX19_05680 at 399.237 kb on + strand at 399.237 kb on + strand at 399.237 kb on + strand at 399.238 kb on - strand at 399.238 kb on - strand at 399.238 kb on - strand at 399.399 kb on - strand at 399.559 kb on + strand, within MPMX19_05681 at 399.559 kb on + strand, within MPMX19_05681 at 399.560 kb on - strand, within MPMX19_05681 at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.981 kb on + strand at 399.982 kb on - strand at 399.982 kb on - strand at 399.982 kb on - strand at 400.053 kb on + strand, within MPMX19_05683 at 400.053 kb on + strand, within MPMX19_05683 at 400.053 kb on + strand, within MPMX19_05683 at 400.054 kb on - strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 397,436 + MPMX19_05679 0.47 -2.8 397,436 + MPMX19_05679 0.47 -2.3 397,436 + MPMX19_05679 0.47 -1.7 397,436 + MPMX19_05679 0.47 -1.9 397,436 + MPMX19_05679 0.47 -3.7 397,436 + MPMX19_05679 0.47 -0.8 397,436 + MPMX19_05679 0.47 -0.7 397,436 + MPMX19_05679 0.47 -0.2 397,436 + MPMX19_05679 0.47 -2.4 397,436 + MPMX19_05679 0.47 -1.8 397,436 + MPMX19_05679 0.47 -2.2 397,436 + MPMX19_05679 0.47 -1.1 397,436 + MPMX19_05679 0.47 -0.4 397,436 + MPMX19_05679 0.47 -2.3 397,436 + MPMX19_05679 0.47 -2.1 397,436 + MPMX19_05679 0.47 -2.3 397,436 + MPMX19_05679 0.47 -2.4 397,436 + MPMX19_05679 0.47 -1.1 397,436 + MPMX19_05679 0.47 -2.3 397,436 + MPMX19_05679 0.47 -2.0 397,436 + MPMX19_05679 0.47 -3.8 397,436 + MPMX19_05679 0.47 -2.4 397,436 + MPMX19_05679 0.47 +0.6 397,437 - MPMX19_05679 0.47 -1.7 397,437 - MPMX19_05679 0.47 -2.0 397,437 - MPMX19_05679 0.47 -1.9 397,437 - MPMX19_05679 0.47 -1.8 397,437 - MPMX19_05679 0.47 -2.8 397,437 - MPMX19_05679 0.47 -2.9 397,437 - MPMX19_05679 0.47 -4.7 397,437 - MPMX19_05679 0.47 -0.1 397,437 - MPMX19_05679 0.47 -3.0 397,437 - MPMX19_05679 0.47 -0.3 397,437 - MPMX19_05679 0.47 -0.6 397,437 - MPMX19_05679 0.47 -2.2 397,437 - MPMX19_05679 0.47 -0.4 397,437 - MPMX19_05679 0.47 -1.1 397,437 - MPMX19_05679 0.47 -2.0 398,155 - -0.6 398,199 + -0.1 398,199 + +0.3 398,199 + -3.1 398,199 + -0.7 398,200 - -0.3 398,200 - +0.1 398,202 + -1.5 398,202 + -0.7 398,202 + -2.8 398,202 + -1.7 398,203 - -2.2 398,203 - +0.7 398,203 - -0.3 398,203 - -0.3 398,203 - -1.1 398,203 - -1.2 398,203 - +1.2 398,203 - +0.0 398,203 - -0.6 398,209 + -1.8 398,209 + -1.9 398,209 + -1.4 398,210 - -1.4 398,268 - -0.5 398,277 + -1.0 398,277 + +0.7 398,277 + +0.2 398,277 + -0.2 398,277 + -0.9 398,278 - -0.3 398,278 - -0.5 398,278 - +0.3 398,297 + -0.8 398,297 + -0.2 398,314 + -0.7 398,314 + +0.9 398,314 + -1.7 398,314 + -1.0 398,314 + -1.4 398,314 + -0.1 398,314 + -0.1 398,315 - -2.4 398,315 - -0.6 398,324 - -1.1 398,540 + MPMX19_05680 0.17 -0.3 398,540 + MPMX19_05680 0.17 +0.2 398,591 + MPMX19_05680 0.24 -0.8 398,705 + MPMX19_05680 0.39 -1.1 398,814 + MPMX19_05680 0.54 -1.3 398,814 + MPMX19_05680 0.54 -1.1 398,814 + MPMX19_05680 0.54 -2.1 398,876 + MPMX19_05680 0.62 -1.4 398,877 - MPMX19_05680 0.62 -0.6 398,948 + MPMX19_05680 0.72 -1.7 399,041 + MPMX19_05680 0.85 -1.7 399,041 + MPMX19_05680 0.85 -0.8 399,041 + MPMX19_05680 0.85 +0.7 399,041 + MPMX19_05680 0.85 -3.1 399,041 + MPMX19_05680 0.85 -1.3 399,041 + MPMX19_05680 0.85 -1.4 399,041 + MPMX19_05680 0.85 +0.7 399,041 + MPMX19_05680 0.85 -1.6 399,041 + MPMX19_05680 0.85 -0.6 399,041 + MPMX19_05680 0.85 -1.6 399,041 + MPMX19_05680 0.85 -0.3 399,041 + MPMX19_05680 0.85 -1.9 399,068 + MPMX19_05680 0.88 +0.7 399,068 + MPMX19_05680 0.88 -0.6 399,237 + -0.4 399,237 + -0.4 399,237 + +0.3 399,238 - -2.3 399,238 - -0.4 399,238 - -1.5 399,399 - -0.1 399,559 + MPMX19_05681 0.70 -0.1 399,559 + MPMX19_05681 0.70 +0.2 399,560 - MPMX19_05681 0.70 -0.4 399,753 + +0.2 399,753 + +0.5 399,753 + -0.4 399,753 + -0.6 399,753 + -0.8 399,753 + -0.5 399,753 + -1.8 399,753 + +0.2 399,753 + -0.7 399,753 + -1.3 399,754 - -1.1 399,754 - +0.0 399,754 - -0.1 399,754 - -1.4 399,754 - -0.6 399,981 + -0.9 399,982 - -1.1 399,982 - -0.3 399,982 - -0.6 400,053 + MPMX19_05683 0.25 -1.8 400,053 + MPMX19_05683 0.25 -1.0 400,053 + MPMX19_05683 0.25 -1.7 400,054 - MPMX19_05683 0.26 +0.2 400,137 + MPMX19_05683 0.63 -0.3 400,137 + MPMX19_05683 0.63 -1.4 400,137 + MPMX19_05683 0.63 -1.9 400,137 + MPMX19_05683 0.63 -2.1 400,137 + MPMX19_05683 0.63 +0.3 400,137 + MPMX19_05683 0.63 -0.4 400,137 + MPMX19_05683 0.63 -0.6 400,137 + MPMX19_05683 0.63 -0.1 400,138 - MPMX19_05683 0.63 -1.2 400,138 - MPMX19_05683 0.63 +0.2 400,138 - MPMX19_05683 0.63 -0.3 400,138 - MPMX19_05683 0.63 +0.3 400,138 - MPMX19_05683 0.63 +0.0 400,138 - MPMX19_05683 0.63 -1.4
Or see this region's nucleotide sequence