Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04946 and MPMX19_04947 overlap by 4 nucleotides MPMX19_04947 and MPMX19_04948 are separated by 55 nucleotides MPMX19_04948 and MPMX19_04949 are separated by 146 nucleotides
MPMX19_04946: MPMX19_04946 - hypothetical protein, at 409,952 to 410,635
_04946
MPMX19_04947: MPMX19_04947 - hypothetical protein, at 410,632 to 411,201
_04947
MPMX19_04948: MPMX19_04948 - HTH-type transcriptional regulator GltR, at 411,257 to 412,204
_04948
MPMX19_04949: MPMX19_04949 - Leu/Ile/Val-binding protein, at 412,351 to 413,676
_04949
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1 at 411.458 kb on + strand, within MPMX19_04948 at 411.459 kb on - strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 412.191 kb on + strand at 412.191 kb on + strand at 412.216 kb on + strand at 412.236 kb on + strand at 412.301 kb on - strand at 412.301 kb on - strand at 412.519 kb on + strand, within MPMX19_04949 at 412.519 kb on + strand, within MPMX19_04949 at 412.766 kb on - strand, within MPMX19_04949 at 413.156 kb on - strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 411,458 + MPMX19_04948 0.21 -1.1 411,459 - MPMX19_04948 0.21 -0.9 411,704 + MPMX19_04948 0.47 -0.3 411,704 + MPMX19_04948 0.47 -1.4 411,704 + MPMX19_04948 0.47 +0.3 411,704 + MPMX19_04948 0.47 -0.3 411,704 + MPMX19_04948 0.47 -1.1 412,191 + -0.0 412,191 + -0.1 412,216 + -0.1 412,236 + +0.1 412,301 - -2.1 412,301 - +0.9 412,519 + MPMX19_04949 0.13 -1.1 412,519 + MPMX19_04949 0.13 -2.2 412,766 - MPMX19_04949 0.31 +0.7 413,156 - MPMX19_04949 0.61 +0.5 413,188 + MPMX19_04949 0.63 -1.0 413,188 + MPMX19_04949 0.63 +0.1 413,188 + MPMX19_04949 0.63 -1.1 413,188 + MPMX19_04949 0.63 -0.1 413,188 + MPMX19_04949 0.63 -1.5 413,189 - MPMX19_04949 0.63 +0.1 413,189 - MPMX19_04949 0.63 -1.1 413,189 - MPMX19_04949 0.63 -0.1 413,189 - MPMX19_04949 0.63 +0.5 413,189 - MPMX19_04949 0.63 -0.3 413,189 - MPMX19_04949 0.63 -0.3
Or see this region's nucleotide sequence