Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04900 and MPMX19_04901 are separated by 26 nucleotides MPMX19_04901 and MPMX19_04902 overlap by 4 nucleotides MPMX19_04902 and MPMX19_04903 are separated by 337 nucleotides
MPMX19_04900: MPMX19_04900 - putative 3-hydroxyacyl-CoA dehydrogenase, at 349,498 to 351,837
_04900
MPMX19_04901: MPMX19_04901 - 3-ketoacyl-CoA thiolase, at 351,864 to 353,000
_04901
MPMX19_04902: MPMX19_04902 - hypothetical protein, at 352,997 to 353,476
_04902
MPMX19_04903: MPMX19_04903 - hypothetical protein, at 353,814 to 354,002
_04903
Position (kb) 351
352
353
354 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 350.903 kb on + strand, within MPMX19_04900 at 350.903 kb on + strand, within MPMX19_04900 at 350.903 kb on + strand, within MPMX19_04900 at 350.904 kb on - strand, within MPMX19_04900 at 350.904 kb on - strand, within MPMX19_04900 at 350.904 kb on - strand, within MPMX19_04900 at 350.904 kb on - strand, within MPMX19_04900 at 350.904 kb on - strand, within MPMX19_04900 at 350.904 kb on - strand, within MPMX19_04900 at 350.966 kb on + strand, within MPMX19_04900 at 350.967 kb on - strand, within MPMX19_04900 at 350.967 kb on - strand, within MPMX19_04900 at 350.994 kb on + strand, within MPMX19_04900 at 350.996 kb on + strand, within MPMX19_04900 at 350.996 kb on + strand, within MPMX19_04900 at 350.996 kb on + strand, within MPMX19_04900 at 350.996 kb on + strand, within MPMX19_04900 at 350.996 kb on + strand, within MPMX19_04900 at 350.996 kb on + strand, within MPMX19_04900 at 350.997 kb on - strand, within MPMX19_04900 at 350.997 kb on - strand, within MPMX19_04900 at 351.386 kb on + strand, within MPMX19_04900 at 351.386 kb on + strand, within MPMX19_04900 at 351.386 kb on + strand, within MPMX19_04900 at 351.386 kb on + strand, within MPMX19_04900 at 351.387 kb on - strand, within MPMX19_04900 at 351.387 kb on - strand, within MPMX19_04900 at 351.387 kb on - strand, within MPMX19_04900 at 351.387 kb on - strand, within MPMX19_04900 at 351.387 kb on - strand, within MPMX19_04900 at 351.387 kb on - strand, within MPMX19_04900 at 351.530 kb on + strand, within MPMX19_04900 at 351.530 kb on + strand, within MPMX19_04900 at 351.530 kb on + strand, within MPMX19_04900 at 351.530 kb on + strand, within MPMX19_04900 at 351.530 kb on + strand, within MPMX19_04900 at 351.530 kb on + strand, within MPMX19_04900 at 351.530 kb on + strand, within MPMX19_04900 at 351.531 kb on - strand, within MPMX19_04900 at 351.531 kb on - strand, within MPMX19_04900 at 351.531 kb on - strand, within MPMX19_04900 at 351.531 kb on - strand, within MPMX19_04900 at 352.255 kb on + strand, within MPMX19_04901 at 352.255 kb on + strand, within MPMX19_04901 at 352.255 kb on + strand, within MPMX19_04901 at 352.255 kb on + strand, within MPMX19_04901 at 352.256 kb on - strand, within MPMX19_04901 at 352.256 kb on - strand, within MPMX19_04901 at 352.256 kb on - strand, within MPMX19_04901 at 352.256 kb on - strand, within MPMX19_04901 at 352.256 kb on - strand, within MPMX19_04901 at 352.256 kb on - strand, within MPMX19_04901 at 352.256 kb on - strand, within MPMX19_04901 at 352.528 kb on + strand, within MPMX19_04901 at 352.528 kb on + strand, within MPMX19_04901 at 352.528 kb on + strand, within MPMX19_04901 at 352.528 kb on + strand, within MPMX19_04901 at 352.528 kb on + strand, within MPMX19_04901 at 352.528 kb on + strand, within MPMX19_04901 at 352.528 kb on + strand, within MPMX19_04901 at 352.529 kb on - strand, within MPMX19_04901 at 352.529 kb on - strand, within MPMX19_04901 at 352.529 kb on - strand, within MPMX19_04901 at 352.529 kb on - strand, within MPMX19_04901 at 352.529 kb on - strand, within MPMX19_04901 at 352.529 kb on - strand, within MPMX19_04901 at 352.529 kb on - strand, within MPMX19_04901 at 352.570 kb on + strand, within MPMX19_04901 at 352.570 kb on + strand, within MPMX19_04901 at 352.570 kb on + strand, within MPMX19_04901 at 352.570 kb on + strand, within MPMX19_04901 at 352.571 kb on - strand, within MPMX19_04901 at 352.582 kb on + strand, within MPMX19_04901 at 352.582 kb on + strand, within MPMX19_04901 at 352.583 kb on - strand, within MPMX19_04901 at 352.583 kb on - strand, within MPMX19_04901 at 352.583 kb on - strand, within MPMX19_04901 at 352.735 kb on + strand, within MPMX19_04901 at 353.160 kb on + strand, within MPMX19_04902 at 353.160 kb on + strand, within MPMX19_04902 at 353.160 kb on + strand, within MPMX19_04902 at 353.161 kb on - strand, within MPMX19_04902 at 353.161 kb on - strand, within MPMX19_04902 at 353.161 kb on - strand, within MPMX19_04902 at 353.196 kb on + strand, within MPMX19_04902 at 353.196 kb on + strand, within MPMX19_04902 at 353.196 kb on + strand, within MPMX19_04902 at 353.197 kb on - strand, within MPMX19_04902 at 353.289 kb on + strand, within MPMX19_04902 at 353.341 kb on - strand, within MPMX19_04902 at 353.341 kb on - strand, within MPMX19_04902 at 353.341 kb on - strand, within MPMX19_04902 at 353.341 kb on - strand, within MPMX19_04902 at 353.502 kb on + strand at 353.502 kb on + strand at 353.507 kb on - strand at 353.507 kb on - strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.599 kb on + strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.600 kb on - strand at 353.651 kb on + strand at 353.651 kb on + strand at 353.651 kb on + strand at 353.651 kb on + strand at 353.651 kb on + strand at 353.652 kb on - strand at 353.652 kb on - strand at 353.652 kb on - strand at 353.652 kb on - strand at 353.652 kb on - strand at 353.759 kb on + strand at 353.759 kb on + strand at 353.759 kb on + strand at 353.759 kb on + strand at 353.760 kb on - strand at 353.760 kb on - strand at 353.760 kb on - strand at 353.833 kb on + strand, within MPMX19_04903 at 353.833 kb on + strand, within MPMX19_04903 at 353.833 kb on + strand, within MPMX19_04903 at 353.833 kb on + strand, within MPMX19_04903 at 353.834 kb on - strand, within MPMX19_04903 at 353.834 kb on - strand, within MPMX19_04903 at 353.852 kb on - strand, within MPMX19_04903 at 353.852 kb on - strand, within MPMX19_04903 at 353.904 kb on + strand, within MPMX19_04903 at 353.904 kb on + strand, within MPMX19_04903 at 353.904 kb on + strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.905 kb on - strand, within MPMX19_04903 at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.994 kb on + strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 353.995 kb on - strand at 354.000 kb on + strand at 354.000 kb on + strand at 354.000 kb on + strand at 354.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 350,903 + MPMX19_04900 0.60 -0.8 350,903 + MPMX19_04900 0.60 -1.2 350,903 + MPMX19_04900 0.60 -0.4 350,904 - MPMX19_04900 0.60 +0.1 350,904 - MPMX19_04900 0.60 +0.2 350,904 - MPMX19_04900 0.60 +0.1 350,904 - MPMX19_04900 0.60 +0.4 350,904 - MPMX19_04900 0.60 -1.1 350,904 - MPMX19_04900 0.60 +0.1 350,966 + MPMX19_04900 0.63 -0.8 350,967 - MPMX19_04900 0.63 +0.4 350,967 - MPMX19_04900 0.63 +0.7 350,994 + MPMX19_04900 0.64 +0.9 350,996 + MPMX19_04900 0.64 +0.5 350,996 + MPMX19_04900 0.64 -1.6 350,996 + MPMX19_04900 0.64 -0.8 350,996 + MPMX19_04900 0.64 -0.1 350,996 + MPMX19_04900 0.64 +0.3 350,996 + MPMX19_04900 0.64 -0.5 350,997 - MPMX19_04900 0.64 -1.1 350,997 - MPMX19_04900 0.64 -0.9 351,386 + MPMX19_04900 0.81 -1.0 351,386 + MPMX19_04900 0.81 -2.9 351,386 + MPMX19_04900 0.81 -1.8 351,386 + MPMX19_04900 0.81 -1.3 351,387 - MPMX19_04900 0.81 -0.8 351,387 - MPMX19_04900 0.81 +0.1 351,387 - MPMX19_04900 0.81 -1.6 351,387 - MPMX19_04900 0.81 -0.3 351,387 - MPMX19_04900 0.81 -0.3 351,387 - MPMX19_04900 0.81 -0.9 351,530 + MPMX19_04900 0.87 -1.8 351,530 + MPMX19_04900 0.87 +0.4 351,530 + MPMX19_04900 0.87 +1.0 351,530 + MPMX19_04900 0.87 -0.3 351,530 + MPMX19_04900 0.87 -0.5 351,530 + MPMX19_04900 0.87 +0.3 351,530 + MPMX19_04900 0.87 +0.1 351,531 - MPMX19_04900 0.87 -1.1 351,531 - MPMX19_04900 0.87 +0.1 351,531 - MPMX19_04900 0.87 -0.2 351,531 - MPMX19_04900 0.87 +0.1 352,255 + MPMX19_04901 0.34 +0.9 352,255 + MPMX19_04901 0.34 -0.3 352,255 + MPMX19_04901 0.34 -2.1 352,255 + MPMX19_04901 0.34 +1.1 352,256 - MPMX19_04901 0.34 -0.1 352,256 - MPMX19_04901 0.34 -0.4 352,256 - MPMX19_04901 0.34 +1.7 352,256 - MPMX19_04901 0.34 -0.2 352,256 - MPMX19_04901 0.34 +0.0 352,256 - MPMX19_04901 0.34 -1.3 352,256 - MPMX19_04901 0.34 -2.8 352,528 + MPMX19_04901 0.58 -0.3 352,528 + MPMX19_04901 0.58 -1.2 352,528 + MPMX19_04901 0.58 +2.2 352,528 + MPMX19_04901 0.58 +0.7 352,528 + MPMX19_04901 0.58 +1.3 352,528 + MPMX19_04901 0.58 +0.6 352,528 + MPMX19_04901 0.58 +1.4 352,529 - MPMX19_04901 0.58 -0.3 352,529 - MPMX19_04901 0.58 -2.1 352,529 - MPMX19_04901 0.58 -0.1 352,529 - MPMX19_04901 0.58 +0.2 352,529 - MPMX19_04901 0.58 -0.2 352,529 - MPMX19_04901 0.58 -0.1 352,529 - MPMX19_04901 0.58 -1.1 352,570 + MPMX19_04901 0.62 -1.4 352,570 + MPMX19_04901 0.62 -0.0 352,570 + MPMX19_04901 0.62 -1.1 352,570 + MPMX19_04901 0.62 -1.8 352,571 - MPMX19_04901 0.62 +2.0 352,582 + MPMX19_04901 0.63 +0.9 352,582 + MPMX19_04901 0.63 +0.1 352,583 - MPMX19_04901 0.63 +0.7 352,583 - MPMX19_04901 0.63 +0.2 352,583 - MPMX19_04901 0.63 -1.8 352,735 + MPMX19_04901 0.77 -2.6 353,160 + MPMX19_04902 0.34 -2.0 353,160 + MPMX19_04902 0.34 +0.1 353,160 + MPMX19_04902 0.34 -0.0 353,161 - MPMX19_04902 0.34 -0.5 353,161 - MPMX19_04902 0.34 -0.5 353,161 - MPMX19_04902 0.34 -0.9 353,196 + MPMX19_04902 0.41 -0.0 353,196 + MPMX19_04902 0.41 +0.1 353,196 + MPMX19_04902 0.41 -2.4 353,197 - MPMX19_04902 0.42 -0.7 353,289 + MPMX19_04902 0.61 +0.2 353,341 - MPMX19_04902 0.72 +0.1 353,341 - MPMX19_04902 0.72 -0.5 353,341 - MPMX19_04902 0.72 -1.6 353,341 - MPMX19_04902 0.72 -1.4 353,502 + -0.4 353,502 + +0.3 353,507 - -0.5 353,507 - -0.6 353,599 + -0.3 353,599 + -0.5 353,599 + -0.9 353,599 + +1.1 353,599 + +0.6 353,599 + -1.6 353,599 + +0.6 353,599 + -0.0 353,599 + +1.7 353,599 + -0.2 353,599 + -1.1 353,599 + -0.0 353,599 + -0.5 353,599 + +0.5 353,600 - -1.1 353,600 - -0.4 353,600 - -1.0 353,600 - -0.8 353,600 - +0.7 353,600 - +0.3 353,600 - -1.0 353,600 - -2.0 353,600 - +0.7 353,600 - -0.6 353,600 - +0.7 353,600 - -1.5 353,600 - -0.3 353,651 + +0.0 353,651 + +0.2 353,651 + +0.0 353,651 + -0.6 353,651 + -1.6 353,652 - -1.0 353,652 - -1.4 353,652 - -0.1 353,652 - -1.6 353,652 - -0.5 353,759 + -1.0 353,759 + -1.1 353,759 + -0.3 353,759 + +0.5 353,760 - -0.8 353,760 - -0.9 353,760 - +0.4 353,833 + MPMX19_04903 0.10 -1.4 353,833 + MPMX19_04903 0.10 +0.7 353,833 + MPMX19_04903 0.10 -1.3 353,833 + MPMX19_04903 0.10 +0.5 353,834 - MPMX19_04903 0.11 -2.1 353,834 - MPMX19_04903 0.11 -2.1 353,852 - MPMX19_04903 0.20 +0.7 353,852 - MPMX19_04903 0.20 +0.1 353,904 + MPMX19_04903 0.48 -0.3 353,904 + MPMX19_04903 0.48 -0.1 353,904 + MPMX19_04903 0.48 -1.1 353,905 - MPMX19_04903 0.48 +0.1 353,905 - MPMX19_04903 0.48 +1.1 353,905 - MPMX19_04903 0.48 -1.5 353,905 - MPMX19_04903 0.48 -1.5 353,905 - MPMX19_04903 0.48 +0.7 353,905 - MPMX19_04903 0.48 +1.0 353,994 + +0.2 353,994 + -0.9 353,994 + +0.7 353,994 + +0.5 353,994 + -1.8 353,994 + +0.1 353,994 + +0.9 353,994 + -1.5 353,994 + -1.1 353,994 + -2.4 353,994 + -0.3 353,994 + +0.8 353,994 + -1.1 353,994 + -2.3 353,994 + -1.3 353,994 + +0.8 353,994 + +0.3 353,995 - -0.1 353,995 - -0.4 353,995 - -0.8 353,995 - +1.2 353,995 - +0.1 353,995 - -1.0 353,995 - -1.0 353,995 - -0.3 353,995 - +0.4 353,995 - -1.5 353,995 - -0.1 354,000 + +0.7 354,000 + -0.1 354,000 + -0.1 354,000 + -0.6
Or see this region's nucleotide sequence