Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04780 and MPMX19_04781 are separated by 125 nucleotides MPMX19_04781 and MPMX19_04782 are separated by 224 nucleotides
MPMX19_04780: MPMX19_04780 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 175,828 to 176,574
_04780
MPMX19_04781: MPMX19_04781 - hypothetical protein, at 176,700 to 177,782
_04781
MPMX19_04782: MPMX19_04782 - hypothetical protein, at 178,007 to 179,419
_04782
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 175.918 kb on + strand, within MPMX19_04780 at 175.918 kb on + strand, within MPMX19_04780 at 175.918 kb on + strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.919 kb on - strand, within MPMX19_04780 at 175.943 kb on + strand, within MPMX19_04780 at 175.944 kb on - strand, within MPMX19_04780 at 175.944 kb on - strand, within MPMX19_04780 at 175.944 kb on - strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.973 kb on + strand, within MPMX19_04780 at 175.974 kb on - strand, within MPMX19_04780 at 175.974 kb on - strand, within MPMX19_04780 at 175.974 kb on - strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.996 kb on + strand, within MPMX19_04780 at 175.997 kb on + strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 175.997 kb on - strand, within MPMX19_04780 at 176.132 kb on + strand, within MPMX19_04780 at 176.132 kb on + strand, within MPMX19_04780 at 176.133 kb on - strand, within MPMX19_04780 at 176.133 kb on - strand, within MPMX19_04780 at 176.267 kb on + strand, within MPMX19_04780 at 176.427 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.447 kb on + strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.448 kb on - strand, within MPMX19_04780 at 176.478 kb on + strand, within MPMX19_04780 at 176.478 kb on + strand, within MPMX19_04780 at 176.479 kb on - strand, within MPMX19_04780 at 176.479 kb on - strand, within MPMX19_04780 at 176.567 kb on + strand at 176.568 kb on - strand at 176.568 kb on - strand at 176.568 kb on - strand at 176.568 kb on - strand at 176.568 kb on - strand at 176.968 kb on + strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 176.969 kb on - strand, within MPMX19_04781 at 177.013 kb on + strand, within MPMX19_04781 at 177.013 kb on + strand, within MPMX19_04781 at 177.013 kb on + strand, within MPMX19_04781 at 177.013 kb on + strand, within MPMX19_04781 at 177.014 kb on - strand, within MPMX19_04781 at 177.014 kb on - strand, within MPMX19_04781 at 177.014 kb on - strand, within MPMX19_04781 at 177.519 kb on + strand, within MPMX19_04781 at 177.572 kb on + strand, within MPMX19_04781 at 177.740 kb on + strand at 177.740 kb on + strand at 177.849 kb on + strand at 177.850 kb on - strand at 177.857 kb on + strand at 177.901 kb on - strand at 177.941 kb on + strand at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.226 kb on + strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.227 kb on - strand, within MPMX19_04782 at 178.347 kb on + strand, within MPMX19_04782 at 178.347 kb on + strand, within MPMX19_04782 at 178.348 kb on - strand, within MPMX19_04782 at 178.348 kb on - strand, within MPMX19_04782 at 178.348 kb on - strand, within MPMX19_04782 at 178.348 kb on - strand, within MPMX19_04782 at 178.431 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.476 kb on + strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.477 kb on - strand, within MPMX19_04782 at 178.624 kb on - strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.719 kb on + strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782 at 178.720 kb on - strand, within MPMX19_04782
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 175,918 + MPMX19_04780 0.12 -0.5 175,918 + MPMX19_04780 0.12 -0.6 175,918 + MPMX19_04780 0.12 +0.5 175,919 - MPMX19_04780 0.12 +0.6 175,919 - MPMX19_04780 0.12 +0.2 175,919 - MPMX19_04780 0.12 +0.7 175,919 - MPMX19_04780 0.12 -0.8 175,919 - MPMX19_04780 0.12 -0.6 175,943 + MPMX19_04780 0.15 -0.6 175,944 - MPMX19_04780 0.16 +0.7 175,944 - MPMX19_04780 0.16 +0.2 175,944 - MPMX19_04780 0.16 -1.5 175,973 + MPMX19_04780 0.19 -0.1 175,973 + MPMX19_04780 0.19 -0.2 175,973 + MPMX19_04780 0.19 -1.1 175,973 + MPMX19_04780 0.19 +0.3 175,973 + MPMX19_04780 0.19 -0.7 175,974 - MPMX19_04780 0.20 -1.5 175,974 - MPMX19_04780 0.20 -2.0 175,974 - MPMX19_04780 0.20 -0.3 175,996 + MPMX19_04780 0.22 +1.7 175,996 + MPMX19_04780 0.22 +0.3 175,996 + MPMX19_04780 0.22 -0.6 175,996 + MPMX19_04780 0.22 -0.2 175,996 + MPMX19_04780 0.22 -1.9 175,996 + MPMX19_04780 0.22 -0.1 175,996 + MPMX19_04780 0.22 +1.7 175,996 + MPMX19_04780 0.22 -0.0 175,997 + MPMX19_04780 0.23 +0.8 175,997 - MPMX19_04780 0.23 -0.7 175,997 - MPMX19_04780 0.23 -0.3 175,997 - MPMX19_04780 0.23 -0.3 175,997 - MPMX19_04780 0.23 -1.9 175,997 - MPMX19_04780 0.23 +0.0 176,132 + MPMX19_04780 0.41 +0.7 176,132 + MPMX19_04780 0.41 +0.7 176,133 - MPMX19_04780 0.41 -1.6 176,133 - MPMX19_04780 0.41 -1.3 176,267 + MPMX19_04780 0.59 -1.3 176,427 + MPMX19_04780 0.80 -0.6 176,447 + MPMX19_04780 0.83 -0.6 176,447 + MPMX19_04780 0.83 -0.4 176,447 + MPMX19_04780 0.83 +0.1 176,447 + MPMX19_04780 0.83 +0.7 176,447 + MPMX19_04780 0.83 -2.0 176,447 + MPMX19_04780 0.83 -0.1 176,447 + MPMX19_04780 0.83 -3.3 176,448 - MPMX19_04780 0.83 +1.4 176,448 - MPMX19_04780 0.83 -1.1 176,448 - MPMX19_04780 0.83 -1.5 176,448 - MPMX19_04780 0.83 -1.0 176,448 - MPMX19_04780 0.83 +0.6 176,448 - MPMX19_04780 0.83 -1.1 176,448 - MPMX19_04780 0.83 +0.1 176,448 - MPMX19_04780 0.83 -0.1 176,478 + MPMX19_04780 0.87 +0.1 176,478 + MPMX19_04780 0.87 -0.9 176,479 - MPMX19_04780 0.87 +2.3 176,479 - MPMX19_04780 0.87 -1.1 176,567 + -0.1 176,568 - -0.9 176,568 - -2.1 176,568 - -0.1 176,568 - -0.2 176,568 - -0.1 176,968 + MPMX19_04781 0.25 -0.4 176,969 - MPMX19_04781 0.25 -0.4 176,969 - MPMX19_04781 0.25 -0.2 176,969 - MPMX19_04781 0.25 +1.1 176,969 - MPMX19_04781 0.25 -2.2 176,969 - MPMX19_04781 0.25 +1.1 176,969 - MPMX19_04781 0.25 -1.9 176,969 - MPMX19_04781 0.25 -1.1 176,969 - MPMX19_04781 0.25 +1.3 176,969 - MPMX19_04781 0.25 +0.4 176,969 - MPMX19_04781 0.25 -1.0 176,969 - MPMX19_04781 0.25 -2.8 177,013 + MPMX19_04781 0.29 -0.5 177,013 + MPMX19_04781 0.29 -1.4 177,013 + MPMX19_04781 0.29 +0.9 177,013 + MPMX19_04781 0.29 +0.2 177,014 - MPMX19_04781 0.29 -0.8 177,014 - MPMX19_04781 0.29 -0.6 177,014 - MPMX19_04781 0.29 +0.0 177,519 + MPMX19_04781 0.76 +0.1 177,572 + MPMX19_04781 0.81 -1.5 177,740 + +0.6 177,740 + +0.9 177,849 + -2.3 177,850 - +0.2 177,857 + -0.6 177,901 - +0.1 177,941 + -0.7 178,226 + MPMX19_04782 0.15 +1.5 178,226 + MPMX19_04782 0.15 +1.4 178,226 + MPMX19_04782 0.15 +0.7 178,226 + MPMX19_04782 0.15 +0.2 178,226 + MPMX19_04782 0.15 +1.8 178,226 + MPMX19_04782 0.15 +0.1 178,226 + MPMX19_04782 0.15 -0.1 178,226 + MPMX19_04782 0.15 -1.0 178,226 + MPMX19_04782 0.15 -0.1 178,226 + MPMX19_04782 0.15 -0.0 178,226 + MPMX19_04782 0.15 +1.1 178,226 + MPMX19_04782 0.15 -0.0 178,226 + MPMX19_04782 0.15 -0.4 178,226 + MPMX19_04782 0.15 -0.2 178,226 + MPMX19_04782 0.15 -1.8 178,226 + MPMX19_04782 0.15 -0.9 178,226 + MPMX19_04782 0.15 -0.3 178,226 + MPMX19_04782 0.15 -1.2 178,226 + MPMX19_04782 0.15 -1.4 178,226 + MPMX19_04782 0.15 -1.3 178,227 - MPMX19_04782 0.16 -0.7 178,227 - MPMX19_04782 0.16 +0.7 178,227 - MPMX19_04782 0.16 +0.7 178,227 - MPMX19_04782 0.16 +1.0 178,227 - MPMX19_04782 0.16 -0.5 178,227 - MPMX19_04782 0.16 -0.6 178,227 - MPMX19_04782 0.16 -0.3 178,227 - MPMX19_04782 0.16 -1.1 178,227 - MPMX19_04782 0.16 -1.0 178,227 - MPMX19_04782 0.16 -0.4 178,227 - MPMX19_04782 0.16 -0.3 178,227 - MPMX19_04782 0.16 -0.4 178,227 - MPMX19_04782 0.16 +1.0 178,227 - MPMX19_04782 0.16 -0.9 178,227 - MPMX19_04782 0.16 -1.1 178,227 - MPMX19_04782 0.16 -0.0 178,227 - MPMX19_04782 0.16 +0.5 178,227 - MPMX19_04782 0.16 +0.2 178,347 + MPMX19_04782 0.24 +3.7 178,347 + MPMX19_04782 0.24 -1.8 178,348 - MPMX19_04782 0.24 +0.1 178,348 - MPMX19_04782 0.24 -0.6 178,348 - MPMX19_04782 0.24 +0.2 178,348 - MPMX19_04782 0.24 -2.0 178,431 + MPMX19_04782 0.30 +1.7 178,476 + MPMX19_04782 0.33 -2.6 178,476 + MPMX19_04782 0.33 -1.5 178,476 + MPMX19_04782 0.33 -1.4 178,476 + MPMX19_04782 0.33 -0.0 178,476 + MPMX19_04782 0.33 +0.3 178,476 + MPMX19_04782 0.33 +0.1 178,476 + MPMX19_04782 0.33 -1.1 178,476 + MPMX19_04782 0.33 -0.1 178,477 - MPMX19_04782 0.33 +0.5 178,477 - MPMX19_04782 0.33 -1.8 178,477 - MPMX19_04782 0.33 -0.2 178,477 - MPMX19_04782 0.33 -0.4 178,477 - MPMX19_04782 0.33 +0.6 178,477 - MPMX19_04782 0.33 -0.4 178,624 - MPMX19_04782 0.44 +1.4 178,719 + MPMX19_04782 0.50 -0.4 178,719 + MPMX19_04782 0.50 -0.3 178,719 + MPMX19_04782 0.50 -0.6 178,719 + MPMX19_04782 0.50 +0.2 178,719 + MPMX19_04782 0.50 -1.8 178,719 + MPMX19_04782 0.50 +0.6 178,719 + MPMX19_04782 0.50 +0.6 178,720 - MPMX19_04782 0.50 +0.3 178,720 - MPMX19_04782 0.50 -2.2 178,720 - MPMX19_04782 0.50 -0.6 178,720 - MPMX19_04782 0.50 -0.4 178,720 - MPMX19_04782 0.50 -0.6 178,720 - MPMX19_04782 0.50 -0.3 178,720 - MPMX19_04782 0.50 -1.2 178,720 - MPMX19_04782 0.50 -0.5 178,720 - MPMX19_04782 0.50 +0.5 178,720 - MPMX19_04782 0.50 +0.1 178,720 - MPMX19_04782 0.50 -0.6 178,720 - MPMX19_04782 0.50 -1.5
Or see this region's nucleotide sequence