Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04695 and MPMX19_04696 overlap by 4 nucleotides MPMX19_04696 and MPMX19_04697 overlap by 1 nucleotides
MPMX19_04695: MPMX19_04695 - Na(+)/H(+) antiporter subunit D, at 79,240 to 80,868
_04695
MPMX19_04696: MPMX19_04696 - Na(+)/H(+) antiporter subunit C1, at 80,865 to 81,209
_04696
MPMX19_04697: MPMX19_04697 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 81,209 to 84,175
_04697
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 79.969 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.312 kb on + strand, within MPMX19_04695 at 80.312 kb on + strand, within MPMX19_04695 at 80.312 kb on + strand, within MPMX19_04695 at 80.312 kb on + strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.313 kb on - strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.369 kb on + strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.370 kb on - strand, within MPMX19_04695 at 80.423 kb on + strand, within MPMX19_04695 at 80.423 kb on + strand, within MPMX19_04695 at 80.423 kb on + strand, within MPMX19_04695 at 80.423 kb on + strand, within MPMX19_04695 at 80.423 kb on + strand, within MPMX19_04695 at 80.423 kb on + strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 80.424 kb on - strand, within MPMX19_04695 at 81.100 kb on + strand, within MPMX19_04696 at 81.100 kb on + strand, within MPMX19_04696 at 81.100 kb on + strand, within MPMX19_04696 at 81.100 kb on + strand, within MPMX19_04696 at 81.100 kb on + strand, within MPMX19_04696 at 81.100 kb on + strand, within MPMX19_04696 at 81.100 kb on + strand, within MPMX19_04696 at 81.100 kb on + strand, within MPMX19_04696 at 81.100 kb on + strand, within MPMX19_04696 at 81.100 kb on + strand, within MPMX19_04696 at 81.101 kb on - strand, within MPMX19_04696 at 81.101 kb on - strand, within MPMX19_04696 at 81.101 kb on - strand, within MPMX19_04696 at 81.432 kb on + strand at 81.433 kb on - strand at 81.441 kb on + strand at 81.441 kb on + strand at 81.441 kb on + strand at 81.441 kb on + strand at 81.441 kb on + strand at 81.441 kb on + strand at 81.442 kb on - strand at 81.442 kb on - strand at 81.442 kb on - strand at 81.442 kb on - strand at 81.573 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.576 kb on + strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.577 kb on - strand, within MPMX19_04697 at 81.843 kb on + strand, within MPMX19_04697 at 81.843 kb on + strand, within MPMX19_04697 at 81.843 kb on + strand, within MPMX19_04697 at 81.844 kb on - strand, within MPMX19_04697 at 81.951 kb on + strand, within MPMX19_04697 at 81.952 kb on - strand, within MPMX19_04697
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 79,969 + MPMX19_04695 0.45 +0.9 80,090 + MPMX19_04695 0.52 +0.9 80,090 + MPMX19_04695 0.52 -0.9 80,090 + MPMX19_04695 0.52 +0.1 80,090 + MPMX19_04695 0.52 -1.2 80,090 + MPMX19_04695 0.52 -0.6 80,090 + MPMX19_04695 0.52 -0.8 80,090 + MPMX19_04695 0.52 -0.9 80,090 + MPMX19_04695 0.52 +2.3 80,090 + MPMX19_04695 0.52 -1.2 80,090 + MPMX19_04695 0.52 -0.2 80,090 + MPMX19_04695 0.52 +0.4 80,090 + MPMX19_04695 0.52 -1.8 80,090 + MPMX19_04695 0.52 +0.3 80,090 + MPMX19_04695 0.52 +0.8 80,090 + MPMX19_04695 0.52 +0.3 80,090 + MPMX19_04695 0.52 +0.3 80,090 + MPMX19_04695 0.52 -1.1 80,090 + MPMX19_04695 0.52 -1.0 80,090 + MPMX19_04695 0.52 -0.4 80,090 + MPMX19_04695 0.52 -2.9 80,090 + MPMX19_04695 0.52 +0.5 80,091 - MPMX19_04695 0.52 -1.6 80,091 - MPMX19_04695 0.52 -1.9 80,091 - MPMX19_04695 0.52 +1.0 80,091 - MPMX19_04695 0.52 -0.5 80,091 - MPMX19_04695 0.52 -0.3 80,091 - MPMX19_04695 0.52 +0.4 80,091 - MPMX19_04695 0.52 -2.2 80,091 - MPMX19_04695 0.52 +0.4 80,091 - MPMX19_04695 0.52 -0.6 80,091 - MPMX19_04695 0.52 +0.4 80,091 - MPMX19_04695 0.52 -0.3 80,091 - MPMX19_04695 0.52 -0.9 80,091 - MPMX19_04695 0.52 -0.3 80,091 - MPMX19_04695 0.52 +1.4 80,091 - MPMX19_04695 0.52 -1.2 80,091 - MPMX19_04695 0.52 -0.2 80,150 + MPMX19_04695 0.56 -0.0 80,150 + MPMX19_04695 0.56 -0.1 80,150 + MPMX19_04695 0.56 +0.1 80,150 + MPMX19_04695 0.56 -0.7 80,150 + MPMX19_04695 0.56 +0.7 80,150 + MPMX19_04695 0.56 +0.3 80,150 + MPMX19_04695 0.56 -0.0 80,150 + MPMX19_04695 0.56 -0.1 80,150 + MPMX19_04695 0.56 -1.6 80,150 + MPMX19_04695 0.56 +0.0 80,150 + MPMX19_04695 0.56 -0.3 80,151 - MPMX19_04695 0.56 -0.2 80,151 - MPMX19_04695 0.56 +0.7 80,151 - MPMX19_04695 0.56 +0.3 80,151 - MPMX19_04695 0.56 -1.4 80,151 - MPMX19_04695 0.56 -0.3 80,151 - MPMX19_04695 0.56 -0.6 80,151 - MPMX19_04695 0.56 -0.5 80,151 - MPMX19_04695 0.56 +1.1 80,151 - MPMX19_04695 0.56 -1.1 80,312 + MPMX19_04695 0.66 -1.2 80,312 + MPMX19_04695 0.66 +0.5 80,312 + MPMX19_04695 0.66 +0.3 80,312 + MPMX19_04695 0.66 +0.8 80,313 - MPMX19_04695 0.66 +0.5 80,313 - MPMX19_04695 0.66 -1.3 80,313 - MPMX19_04695 0.66 -1.8 80,313 - MPMX19_04695 0.66 +1.0 80,313 - MPMX19_04695 0.66 +0.7 80,313 - MPMX19_04695 0.66 +0.5 80,313 - MPMX19_04695 0.66 +0.2 80,313 - MPMX19_04695 0.66 -1.2 80,313 - MPMX19_04695 0.66 -0.4 80,313 - MPMX19_04695 0.66 -0.2 80,369 + MPMX19_04695 0.69 +0.7 80,369 + MPMX19_04695 0.69 +1.0 80,369 + MPMX19_04695 0.69 +0.7 80,369 + MPMX19_04695 0.69 -0.9 80,369 + MPMX19_04695 0.69 +0.9 80,369 + MPMX19_04695 0.69 -1.9 80,369 + MPMX19_04695 0.69 +0.5 80,369 + MPMX19_04695 0.69 -0.2 80,369 + MPMX19_04695 0.69 +0.7 80,369 + MPMX19_04695 0.69 -2.4 80,369 + MPMX19_04695 0.69 -1.5 80,369 + MPMX19_04695 0.69 -0.1 80,369 + MPMX19_04695 0.69 +0.2 80,370 - MPMX19_04695 0.69 -1.3 80,370 - MPMX19_04695 0.69 -0.7 80,370 - MPMX19_04695 0.69 -1.5 80,370 - MPMX19_04695 0.69 -0.6 80,370 - MPMX19_04695 0.69 -0.5 80,370 - MPMX19_04695 0.69 +0.6 80,370 - MPMX19_04695 0.69 +0.3 80,370 - MPMX19_04695 0.69 -1.0 80,370 - MPMX19_04695 0.69 +0.7 80,370 - MPMX19_04695 0.69 +0.9 80,370 - MPMX19_04695 0.69 -0.7 80,370 - MPMX19_04695 0.69 -0.3 80,370 - MPMX19_04695 0.69 +0.0 80,370 - MPMX19_04695 0.69 -0.1 80,423 + MPMX19_04695 0.73 -0.2 80,423 + MPMX19_04695 0.73 -1.4 80,423 + MPMX19_04695 0.73 -0.3 80,423 + MPMX19_04695 0.73 -0.6 80,423 + MPMX19_04695 0.73 -2.4 80,423 + MPMX19_04695 0.73 +1.1 80,424 - MPMX19_04695 0.73 +0.0 80,424 - MPMX19_04695 0.73 -0.9 80,424 - MPMX19_04695 0.73 -0.0 80,424 - MPMX19_04695 0.73 +0.0 80,424 - MPMX19_04695 0.73 +0.2 80,424 - MPMX19_04695 0.73 -0.8 80,424 - MPMX19_04695 0.73 -0.1 80,424 - MPMX19_04695 0.73 -0.3 80,424 - MPMX19_04695 0.73 -0.6 80,424 - MPMX19_04695 0.73 +0.3 80,424 - MPMX19_04695 0.73 -1.3 80,424 - MPMX19_04695 0.73 -0.9 81,100 + MPMX19_04696 0.68 -1.4 81,100 + MPMX19_04696 0.68 +0.7 81,100 + MPMX19_04696 0.68 +1.3 81,100 + MPMX19_04696 0.68 +0.5 81,100 + MPMX19_04696 0.68 -0.0 81,100 + MPMX19_04696 0.68 +0.8 81,100 + MPMX19_04696 0.68 -0.2 81,100 + MPMX19_04696 0.68 -0.4 81,100 + MPMX19_04696 0.68 +1.2 81,100 + MPMX19_04696 0.68 -0.9 81,101 - MPMX19_04696 0.68 -0.3 81,101 - MPMX19_04696 0.68 -0.9 81,101 - MPMX19_04696 0.68 -0.3 81,432 + -0.6 81,433 - +0.8 81,441 + +1.2 81,441 + -1.3 81,441 + -1.1 81,441 + -1.1 81,441 + -2.2 81,441 + -0.9 81,442 - -2.0 81,442 - +0.7 81,442 - -0.6 81,442 - -0.9 81,573 + MPMX19_04697 0.12 +0.5 81,576 + MPMX19_04697 0.12 +0.9 81,576 + MPMX19_04697 0.12 -0.8 81,576 + MPMX19_04697 0.12 +0.5 81,576 + MPMX19_04697 0.12 -0.8 81,576 + MPMX19_04697 0.12 +2.4 81,576 + MPMX19_04697 0.12 -0.8 81,576 + MPMX19_04697 0.12 -0.4 81,576 + MPMX19_04697 0.12 +0.8 81,576 + MPMX19_04697 0.12 +0.5 81,576 + MPMX19_04697 0.12 +0.3 81,576 + MPMX19_04697 0.12 -0.5 81,576 + MPMX19_04697 0.12 +1.1 81,576 + MPMX19_04697 0.12 -1.3 81,576 + MPMX19_04697 0.12 +0.1 81,576 + MPMX19_04697 0.12 -0.6 81,576 + MPMX19_04697 0.12 -1.8 81,576 + MPMX19_04697 0.12 -0.1 81,576 + MPMX19_04697 0.12 +0.9 81,576 + MPMX19_04697 0.12 +0.1 81,576 + MPMX19_04697 0.12 -0.9 81,576 + MPMX19_04697 0.12 -1.2 81,576 + MPMX19_04697 0.12 -0.3 81,576 + MPMX19_04697 0.12 -0.9 81,576 + MPMX19_04697 0.12 -1.3 81,576 + MPMX19_04697 0.12 -0.7 81,577 - MPMX19_04697 0.12 +0.7 81,577 - MPMX19_04697 0.12 -1.9 81,577 - MPMX19_04697 0.12 +1.2 81,577 - MPMX19_04697 0.12 +0.1 81,577 - MPMX19_04697 0.12 -0.3 81,577 - MPMX19_04697 0.12 -0.9 81,577 - MPMX19_04697 0.12 -1.0 81,577 - MPMX19_04697 0.12 -0.1 81,577 - MPMX19_04697 0.12 -0.3 81,577 - MPMX19_04697 0.12 -0.3 81,577 - MPMX19_04697 0.12 +0.3 81,577 - MPMX19_04697 0.12 -0.3 81,577 - MPMX19_04697 0.12 -0.8 81,577 - MPMX19_04697 0.12 -1.1 81,577 - MPMX19_04697 0.12 +0.3 81,577 - MPMX19_04697 0.12 -1.0 81,577 - MPMX19_04697 0.12 +0.5 81,577 - MPMX19_04697 0.12 -0.7 81,577 - MPMX19_04697 0.12 +1.4 81,577 - MPMX19_04697 0.12 -1.4 81,577 - MPMX19_04697 0.12 -0.3 81,577 - MPMX19_04697 0.12 +0.1 81,577 - MPMX19_04697 0.12 -0.5 81,577 - MPMX19_04697 0.12 +0.3 81,577 - MPMX19_04697 0.12 -0.6 81,577 - MPMX19_04697 0.12 -0.8 81,577 - MPMX19_04697 0.12 +0.0 81,577 - MPMX19_04697 0.12 +1.1 81,577 - MPMX19_04697 0.12 -0.6 81,577 - MPMX19_04697 0.12 +0.1 81,843 + MPMX19_04697 0.21 -0.3 81,843 + MPMX19_04697 0.21 -0.8 81,843 + MPMX19_04697 0.21 +0.7 81,844 - MPMX19_04697 0.21 -0.1 81,951 + MPMX19_04697 0.25 +1.3 81,952 - MPMX19_04697 0.25 -0.3
Or see this region's nucleotide sequence