Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04214 and MPMX19_04215 are separated by 211 nucleotides MPMX19_04215 and MPMX19_04216 are separated by 45 nucleotides MPMX19_04216 and MPMX19_04217 are separated by 51 nucleotides MPMX19_04217 and MPMX19_04218 are separated by 225 nucleotides
MPMX19_04214: MPMX19_04214 - hypothetical protein, at 555,067 to 555,969
_04214
MPMX19_04215: MPMX19_04215 - hypothetical protein, at 556,181 to 556,756
_04215
MPMX19_04216: MPMX19_04216 - hypothetical protein, at 556,802 to 557,014
_04216
MPMX19_04217: MPMX19_04217 - Flagellar basal-body rod protein FlgC, at 557,066 to 557,497
_04217
MPMX19_04218: MPMX19_04218 - Protein phosphatase PrpC, at 557,723 to 558,538
_04218
Position (kb) 556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 555.686 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.842 kb on + strand, within MPMX19_04214 at 555.843 kb on - strand, within MPMX19_04214 at 555.843 kb on - strand, within MPMX19_04214 at 555.843 kb on - strand, within MPMX19_04214 at 555.843 kb on - strand, within MPMX19_04214 at 555.843 kb on - strand, within MPMX19_04214 at 555.843 kb on - strand, within MPMX19_04214 at 555.890 kb on + strand at 555.890 kb on + strand at 555.890 kb on + strand at 555.890 kb on + strand at 555.890 kb on + strand at 555.890 kb on + strand at 555.890 kb on + strand at 555.891 kb on - strand at 555.891 kb on - strand at 555.891 kb on - strand at 555.891 kb on - strand at 555.891 kb on - strand at 555.891 kb on - strand at 555.891 kb on - strand at 555.982 kb on + strand at 555.983 kb on - strand at 556.028 kb on + strand at 556.028 kb on + strand at 556.029 kb on - strand at 556.029 kb on - strand at 556.029 kb on - strand at 556.029 kb on - strand at 556.040 kb on + strand at 556.040 kb on + strand at 556.040 kb on + strand at 556.045 kb on - strand at 556.075 kb on + strand at 556.076 kb on - strand at 556.082 kb on + strand at 556.083 kb on - strand at 556.100 kb on + strand at 556.100 kb on + strand at 556.106 kb on + strand at 556.107 kb on - strand at 556.119 kb on + strand at 556.119 kb on + strand at 556.140 kb on + strand at 556.140 kb on + strand at 556.145 kb on + strand at 556.145 kb on + strand at 556.164 kb on - strand at 556.324 kb on + strand, within MPMX19_04215 at 556.324 kb on + strand, within MPMX19_04215 at 556.325 kb on - strand, within MPMX19_04215 at 556.325 kb on - strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 557.136 kb on + strand, within MPMX19_04217 at 557.136 kb on + strand, within MPMX19_04217 at 557.137 kb on - strand, within MPMX19_04217 at 557.137 kb on - strand, within MPMX19_04217 at 557.137 kb on - strand, within MPMX19_04217 at 557.164 kb on + strand, within MPMX19_04217 at 557.164 kb on + strand, within MPMX19_04217 at 557.164 kb on + strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.239 kb on - strand, within MPMX19_04217 at 557.239 kb on - strand, within MPMX19_04217 at 557.239 kb on - strand, within MPMX19_04217 at 557.239 kb on - strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.251 kb on - strand, within MPMX19_04217 at 557.251 kb on - strand, within MPMX19_04217 at 557.251 kb on - strand, within MPMX19_04217 at 557.251 kb on - strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.326 kb on - strand, within MPMX19_04217 at 557.326 kb on - strand, within MPMX19_04217 at 557.326 kb on - strand, within MPMX19_04217 at 557.326 kb on - strand, within MPMX19_04217 at 557.458 kb on + strand at 557.458 kb on + strand at 557.459 kb on - strand at 557.497 kb on + strand at 557.497 kb on + strand at 557.498 kb on - strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.553 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.580 kb on - strand at 557.580 kb on - strand at 557.580 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 555,686 + MPMX19_04214 0.69 +0.4 555,842 + MPMX19_04214 0.86 -0.7 555,842 + MPMX19_04214 0.86 -0.5 555,842 + MPMX19_04214 0.86 +1.7 555,842 + MPMX19_04214 0.86 +0.2 555,842 + MPMX19_04214 0.86 -1.0 555,842 + MPMX19_04214 0.86 +1.4 555,842 + MPMX19_04214 0.86 -0.1 555,842 + MPMX19_04214 0.86 +0.2 555,842 + MPMX19_04214 0.86 -2.2 555,842 + MPMX19_04214 0.86 +0.2 555,842 + MPMX19_04214 0.86 +0.7 555,843 - MPMX19_04214 0.86 -3.3 555,843 - MPMX19_04214 0.86 +1.7 555,843 - MPMX19_04214 0.86 +1.1 555,843 - MPMX19_04214 0.86 -0.6 555,843 - MPMX19_04214 0.86 -0.7 555,843 - MPMX19_04214 0.86 +0.2 555,890 + -0.8 555,890 + -1.0 555,890 + -1.0 555,890 + -1.0 555,890 + -1.3 555,890 + +1.2 555,890 + +2.6 555,891 - -0.9 555,891 - -0.3 555,891 - -1.6 555,891 - +1.0 555,891 - -0.4 555,891 - +0.5 555,891 - +0.2 555,982 + -1.8 555,983 - -0.1 556,028 + -0.8 556,028 + -0.4 556,029 - +0.9 556,029 - -1.3 556,029 - -0.1 556,029 - -1.6 556,040 + +0.4 556,040 + -1.7 556,040 + -0.7 556,045 - -0.4 556,075 + -0.1 556,076 - -0.3 556,082 + +1.3 556,083 - -0.1 556,100 + -0.6 556,100 + -1.6 556,106 + -0.4 556,107 - -0.5 556,119 + -1.3 556,119 + -0.8 556,140 + -1.6 556,140 + -1.3 556,145 + +0.3 556,145 + +0.2 556,164 - -0.1 556,324 + MPMX19_04215 0.25 -2.0 556,324 + MPMX19_04215 0.25 -0.8 556,325 - MPMX19_04215 0.25 -0.0 556,325 - MPMX19_04215 0.25 +0.6 556,370 + MPMX19_04215 0.33 -1.1 556,370 + MPMX19_04215 0.33 -1.2 556,370 + MPMX19_04215 0.33 -1.2 556,370 + MPMX19_04215 0.33 +1.0 556,370 + MPMX19_04215 0.33 +0.1 556,370 + MPMX19_04215 0.33 -1.3 556,370 + MPMX19_04215 0.33 +1.3 556,370 + MPMX19_04215 0.33 -0.8 556,370 + MPMX19_04215 0.33 -0.8 556,371 - MPMX19_04215 0.33 +1.2 556,371 - MPMX19_04215 0.33 +0.4 556,371 - MPMX19_04215 0.33 -0.8 556,371 - MPMX19_04215 0.33 +0.3 556,371 - MPMX19_04215 0.33 -0.1 556,371 - MPMX19_04215 0.33 -0.1 556,371 - MPMX19_04215 0.33 +0.3 556,371 - MPMX19_04215 0.33 +1.1 556,371 - MPMX19_04215 0.33 +0.0 556,371 - MPMX19_04215 0.33 -2.2 556,466 + MPMX19_04215 0.49 -0.3 556,466 + MPMX19_04215 0.49 +0.3 556,466 + MPMX19_04215 0.49 -0.1 556,466 + MPMX19_04215 0.49 -0.7 556,466 + MPMX19_04215 0.49 -1.3 556,466 + MPMX19_04215 0.49 -0.8 556,466 + MPMX19_04215 0.49 -1.6 556,466 + MPMX19_04215 0.49 +0.1 556,466 + MPMX19_04215 0.49 +0.9 556,466 + MPMX19_04215 0.49 -1.9 556,466 + MPMX19_04215 0.49 -0.5 556,466 + MPMX19_04215 0.49 -1.0 556,467 - MPMX19_04215 0.50 -0.8 556,467 - MPMX19_04215 0.50 -0.4 556,467 - MPMX19_04215 0.50 -0.7 556,467 - MPMX19_04215 0.50 +0.7 556,467 - MPMX19_04215 0.50 -1.3 556,467 - MPMX19_04215 0.50 -1.5 556,467 - MPMX19_04215 0.50 -1.4 556,467 - MPMX19_04215 0.50 -0.3 556,467 - MPMX19_04215 0.50 -1.0 556,467 - MPMX19_04215 0.50 -1.1 556,577 + MPMX19_04215 0.69 +0.3 556,577 + MPMX19_04215 0.69 -1.3 556,577 + MPMX19_04215 0.69 -1.1 556,577 + MPMX19_04215 0.69 +0.2 556,577 + MPMX19_04215 0.69 -0.0 556,577 + MPMX19_04215 0.69 +0.3 556,577 + MPMX19_04215 0.69 +0.7 556,577 + MPMX19_04215 0.69 +1.3 556,577 + MPMX19_04215 0.69 +0.2 556,577 + MPMX19_04215 0.69 -1.7 556,577 + MPMX19_04215 0.69 +0.9 556,578 - MPMX19_04215 0.69 -0.4 556,578 - MPMX19_04215 0.69 -0.3 556,578 - MPMX19_04215 0.69 +0.5 556,578 - MPMX19_04215 0.69 +0.2 556,578 - MPMX19_04215 0.69 +0.4 556,578 - MPMX19_04215 0.69 -0.5 556,578 - MPMX19_04215 0.69 +0.4 556,578 - MPMX19_04215 0.69 -0.8 556,578 - MPMX19_04215 0.69 +0.3 556,578 - MPMX19_04215 0.69 +0.7 556,578 - MPMX19_04215 0.69 +0.3 556,578 - MPMX19_04215 0.69 -0.6 556,578 - MPMX19_04215 0.69 -0.1 556,578 - MPMX19_04215 0.69 +0.2 556,578 - MPMX19_04215 0.69 -1.8 556,578 - MPMX19_04215 0.69 -0.7 556,578 - MPMX19_04215 0.69 -1.3 556,578 - MPMX19_04215 0.69 -0.7 556,578 - MPMX19_04215 0.69 -0.1 556,578 - MPMX19_04215 0.69 -1.3 557,136 + MPMX19_04217 0.16 +0.2 557,136 + MPMX19_04217 0.16 -1.1 557,137 - MPMX19_04217 0.16 -0.6 557,137 - MPMX19_04217 0.16 +0.7 557,137 - MPMX19_04217 0.16 -0.1 557,164 + MPMX19_04217 0.23 -0.3 557,164 + MPMX19_04217 0.23 +0.6 557,164 + MPMX19_04217 0.23 +0.1 557,165 - MPMX19_04217 0.23 -0.3 557,165 - MPMX19_04217 0.23 -0.6 557,165 - MPMX19_04217 0.23 -0.3 557,165 - MPMX19_04217 0.23 +0.0 557,165 - MPMX19_04217 0.23 +2.2 557,165 - MPMX19_04217 0.23 -0.7 557,165 - MPMX19_04217 0.23 -2.6 557,238 + MPMX19_04217 0.40 +0.7 557,238 + MPMX19_04217 0.40 -2.1 557,238 + MPMX19_04217 0.40 -0.8 557,238 + MPMX19_04217 0.40 -0.1 557,238 + MPMX19_04217 0.40 -0.3 557,238 + MPMX19_04217 0.40 +0.3 557,238 + MPMX19_04217 0.40 -1.8 557,238 + MPMX19_04217 0.40 +0.3 557,238 + MPMX19_04217 0.40 +0.4 557,238 + MPMX19_04217 0.40 -1.4 557,238 + MPMX19_04217 0.40 -1.1 557,238 + MPMX19_04217 0.40 -0.2 557,238 + MPMX19_04217 0.40 +0.2 557,239 - MPMX19_04217 0.40 -1.3 557,239 - MPMX19_04217 0.40 +0.2 557,239 - MPMX19_04217 0.40 -0.8 557,239 - MPMX19_04217 0.40 -1.5 557,250 + MPMX19_04217 0.43 +0.0 557,250 + MPMX19_04217 0.43 -0.3 557,250 + MPMX19_04217 0.43 -1.7 557,250 + MPMX19_04217 0.43 +1.0 557,250 + MPMX19_04217 0.43 -0.1 557,250 + MPMX19_04217 0.43 +0.0 557,251 - MPMX19_04217 0.43 -1.1 557,251 - MPMX19_04217 0.43 -0.2 557,251 - MPMX19_04217 0.43 -2.4 557,251 - MPMX19_04217 0.43 -1.4 557,325 + MPMX19_04217 0.60 -0.8 557,325 + MPMX19_04217 0.60 -1.4 557,325 + MPMX19_04217 0.60 -0.6 557,325 + MPMX19_04217 0.60 +0.4 557,325 + MPMX19_04217 0.60 -0.6 557,326 - MPMX19_04217 0.60 -0.8 557,326 - MPMX19_04217 0.60 -0.3 557,326 - MPMX19_04217 0.60 -0.6 557,326 - MPMX19_04217 0.60 -2.2 557,458 + -0.6 557,458 + -0.6 557,459 - +0.4 557,497 + -0.8 557,497 + +0.7 557,498 - +0.7 557,510 + -0.2 557,510 + -1.8 557,510 + -0.5 557,510 + +1.0 557,510 + +0.9 557,510 + +0.7 557,510 + -0.8 557,510 + -0.0 557,511 - -0.2 557,511 - +1.3 557,511 - +0.9 557,511 - -0.4 557,511 - +0.7 557,511 - +0.3 557,511 - +0.2 557,553 + -1.6 557,579 + +0.5 557,579 + +0.7 557,579 + +0.0 557,579 + -0.7 557,579 + -0.6 557,579 + -2.0 557,580 - +0.7 557,580 - -0.3 557,580 - +0.4
Or see this region's nucleotide sequence