Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04199

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04198 and MPMX19_04199 are separated by 117 nucleotidesMPMX19_04199 and MPMX19_04200 overlap by 8 nucleotidesMPMX19_04200 and MPMX19_04201 are separated by 32 nucleotides MPMX19_04198: MPMX19_04198 - hypothetical protein, at 532,243 to 533,844 _04198 MPMX19_04199: MPMX19_04199 - Pseudaminic acid synthase, at 533,962 to 535,017 _04199 MPMX19_04200: MPMX19_04200 - 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase, at 535,010 to 535,774 _04200 MPMX19_04201: MPMX19_04201 - hypothetical protein, at 535,807 to 536,040 _04201 Position (kb) 533 534 535 536Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 533.026 kb on + strand, within MPMX19_04198at 533.026 kb on + strand, within MPMX19_04198at 533.026 kb on + strand, within MPMX19_04198at 533.027 kb on - strand, within MPMX19_04198at 533.027 kb on - strand, within MPMX19_04198at 533.027 kb on - strand, within MPMX19_04198at 533.080 kb on + strand, within MPMX19_04198at 533.081 kb on - strand, within MPMX19_04198at 533.081 kb on - strand, within MPMX19_04198at 533.164 kb on + strand, within MPMX19_04198at 533.165 kb on - strand, within MPMX19_04198at 533.203 kb on + strand, within MPMX19_04198at 533.203 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.509 kb on + strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.510 kb on - strand, within MPMX19_04198at 533.569 kb on + strand, within MPMX19_04198at 533.569 kb on + strand, within MPMX19_04198at 533.569 kb on + strand, within MPMX19_04198at 533.569 kb on + strand, within MPMX19_04198at 533.569 kb on + strand, within MPMX19_04198at 533.569 kb on + strand, within MPMX19_04198at 533.569 kb on + strand, within MPMX19_04198at 533.570 kb on - strand, within MPMX19_04198at 533.570 kb on - strand, within MPMX19_04198at 533.570 kb on - strand, within MPMX19_04198at 533.570 kb on - strand, within MPMX19_04198at 533.665 kb on + strand, within MPMX19_04198at 533.665 kb on + strand, within MPMX19_04198at 533.665 kb on + strand, within MPMX19_04198at 533.665 kb on + strand, within MPMX19_04198at 533.665 kb on + strand, within MPMX19_04198at 533.665 kb on + strand, within MPMX19_04198at 533.665 kb on + strand, within MPMX19_04198at 533.665 kb on + strand, within MPMX19_04198at 533.666 kb on - strand, within MPMX19_04198at 533.666 kb on - strand, within MPMX19_04198at 533.666 kb on - strand, within MPMX19_04198at 533.666 kb on - strand, within MPMX19_04198at 533.666 kb on - strand, within MPMX19_04198at 533.666 kb on - strand, within MPMX19_04198at 533.788 kb on + strandat 533.789 kb on - strandat 533.789 kb on - strandat 533.789 kb on - strandat 533.789 kb on - strandat 533.842 kb on + strandat 533.842 kb on + strandat 533.843 kb on - strandat 534.004 kb on + strandat 534.004 kb on + strandat 534.005 kb on - strandat 534.005 kb on - strandat 534.005 kb on - strandat 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.112 kb on + strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.113 kb on - strand, within MPMX19_04199at 534.202 kb on + strand, within MPMX19_04199at 534.203 kb on - strand, within MPMX19_04199at 534.775 kb on + strand, within MPMX19_04199at 534.775 kb on + strand, within MPMX19_04199at 534.775 kb on + strand, within MPMX19_04199at 534.776 kb on - strand, within MPMX19_04199at 534.811 kb on + strand, within MPMX19_04199at 534.812 kb on - strand, within MPMX19_04199at 534.812 kb on - strand, within MPMX19_04199at 534.812 kb on - strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.826 kb on + strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 534.827 kb on - strand, within MPMX19_04199at 535.015 kb on + strandat 535.016 kb on - strandat 535.016 kb on - strandat 535.016 kb on - strandat 535.016 kb on - strandat 535.016 kb on - strandat 535.266 kb on + strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.425 kb on - strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.524 kb on - strand, within MPMX19_04200at 535.530 kb on - strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.635 kb on - strand, within MPMX19_04200at 535.635 kb on - strand, within MPMX19_04200at 535.635 kb on - strand, within MPMX19_04200

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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533,026 + MPMX19_04198 0.49 -0.9
533,026 + MPMX19_04198 0.49 +0.5
533,026 + MPMX19_04198 0.49 +0.7
533,027 - MPMX19_04198 0.49 -1.4
533,027 - MPMX19_04198 0.49 -0.9
533,027 - MPMX19_04198 0.49 +0.3
533,080 + MPMX19_04198 0.52 -0.4
533,081 - MPMX19_04198 0.52 -1.0
533,081 - MPMX19_04198 0.52 +0.2
533,164 + MPMX19_04198 0.57 -0.4
533,165 - MPMX19_04198 0.58 -1.5
533,203 + MPMX19_04198 0.60 +0.2
533,203 + MPMX19_04198 0.60 -0.3
533,509 + MPMX19_04198 0.79 -0.1
533,509 + MPMX19_04198 0.79 -1.4
533,509 + MPMX19_04198 0.79 +0.6
533,509 + MPMX19_04198 0.79 +0.6
533,509 + MPMX19_04198 0.79 -0.3
533,509 + MPMX19_04198 0.79 -0.3
533,509 + MPMX19_04198 0.79 -2.7
533,509 + MPMX19_04198 0.79 +0.2
533,509 + MPMX19_04198 0.79 +1.0
533,509 + MPMX19_04198 0.79 -0.3
533,509 + MPMX19_04198 0.79 +0.7
533,509 + MPMX19_04198 0.79 -0.1
533,509 + MPMX19_04198 0.79 -1.7
533,509 + MPMX19_04198 0.79 -0.4
533,509 + MPMX19_04198 0.79 -0.0
533,509 + MPMX19_04198 0.79 +0.6
533,509 + MPMX19_04198 0.79 -0.7
533,509 + MPMX19_04198 0.79 +0.1
533,509 + MPMX19_04198 0.79 +0.4
533,509 + MPMX19_04198 0.79 -1.3
533,509 + MPMX19_04198 0.79 -1.0
533,509 + MPMX19_04198 0.79 -0.2
533,509 + MPMX19_04198 0.79 -0.8
533,509 + MPMX19_04198 0.79 -1.3
533,509 + MPMX19_04198 0.79 -2.1
533,510 - MPMX19_04198 0.79 -1.2
533,510 - MPMX19_04198 0.79 -1.7
533,510 - MPMX19_04198 0.79 -0.8
533,510 - MPMX19_04198 0.79 +0.3
533,510 - MPMX19_04198 0.79 -0.2
533,510 - MPMX19_04198 0.79 -0.3
533,510 - MPMX19_04198 0.79 -2.6
533,510 - MPMX19_04198 0.79 -0.2
533,510 - MPMX19_04198 0.79 -0.4
533,510 - MPMX19_04198 0.79 -1.2
533,510 - MPMX19_04198 0.79 -0.1
533,510 - MPMX19_04198 0.79 +0.4
533,569 + MPMX19_04198 0.83 -2.0
533,569 + MPMX19_04198 0.83 -0.2
533,569 + MPMX19_04198 0.83 -0.8
533,569 + MPMX19_04198 0.83 -1.6
533,569 + MPMX19_04198 0.83 -0.2
533,569 + MPMX19_04198 0.83 +0.1
533,569 + MPMX19_04198 0.83 -2.3
533,570 - MPMX19_04198 0.83 +0.1
533,570 - MPMX19_04198 0.83 -1.7
533,570 - MPMX19_04198 0.83 +2.0
533,570 - MPMX19_04198 0.83 -1.1
533,665 + MPMX19_04198 0.89 -0.1
533,665 + MPMX19_04198 0.89 -0.0
533,665 + MPMX19_04198 0.89 -1.0
533,665 + MPMX19_04198 0.89 +1.3
533,665 + MPMX19_04198 0.89 +0.9
533,665 + MPMX19_04198 0.89 +0.4
533,665 + MPMX19_04198 0.89 -1.9
533,665 + MPMX19_04198 0.89 -1.1
533,666 - MPMX19_04198 0.89 +0.6
533,666 - MPMX19_04198 0.89 -2.1
533,666 - MPMX19_04198 0.89 +0.3
533,666 - MPMX19_04198 0.89 -0.3
533,666 - MPMX19_04198 0.89 +0.1
533,666 - MPMX19_04198 0.89 +0.3
533,788 + +1.0
533,789 - -0.7
533,789 - -0.7
533,789 - -1.0
533,789 - -0.0
533,842 + -1.1
533,842 + -1.0
533,843 - -0.5
534,004 + -0.7
534,004 + +0.5
534,005 - +0.2
534,005 - -0.4
534,005 - -0.7
534,112 + MPMX19_04199 0.14 -0.8
534,112 + MPMX19_04199 0.14 -2.9
534,112 + MPMX19_04199 0.14 -1.1
534,112 + MPMX19_04199 0.14 -0.3
534,112 + MPMX19_04199 0.14 +0.3
534,112 + MPMX19_04199 0.14 -1.3
534,112 + MPMX19_04199 0.14 -1.7
534,112 + MPMX19_04199 0.14 -1.4
534,112 + MPMX19_04199 0.14 -0.6
534,112 + MPMX19_04199 0.14 -1.8
534,112 + MPMX19_04199 0.14 +0.7
534,112 + MPMX19_04199 0.14 +1.4
534,112 + MPMX19_04199 0.14 -0.8
534,112 + MPMX19_04199 0.14 -1.7
534,113 - MPMX19_04199 0.14 -0.3
534,113 - MPMX19_04199 0.14 +0.7
534,113 - MPMX19_04199 0.14 -0.3
534,113 - MPMX19_04199 0.14 -2.0
534,113 - MPMX19_04199 0.14 -1.8
534,113 - MPMX19_04199 0.14 -2.4
534,113 - MPMX19_04199 0.14 -1.4
534,113 - MPMX19_04199 0.14 -3.1
534,113 - MPMX19_04199 0.14 -1.1
534,113 - MPMX19_04199 0.14 -1.2
534,202 + MPMX19_04199 0.23 -0.5
534,203 - MPMX19_04199 0.23 +0.3
534,775 + MPMX19_04199 0.77 +0.9
534,775 + MPMX19_04199 0.77 +0.1
534,775 + MPMX19_04199 0.77 -2.2
534,776 - MPMX19_04199 0.77 +2.3
534,811 + MPMX19_04199 0.80 -1.0
534,812 - MPMX19_04199 0.80 -0.6
534,812 - MPMX19_04199 0.80 -0.5
534,812 - MPMX19_04199 0.80 -1.6
534,826 + MPMX19_04199 0.82 -0.5
534,826 + MPMX19_04199 0.82 -1.7
534,826 + MPMX19_04199 0.82 -1.4
534,826 + MPMX19_04199 0.82 -1.3
534,826 + MPMX19_04199 0.82 -1.1
534,826 + MPMX19_04199 0.82 -2.0
534,826 + MPMX19_04199 0.82 -1.2
534,826 + MPMX19_04199 0.82 -2.1
534,826 + MPMX19_04199 0.82 -2.2
534,826 + MPMX19_04199 0.82 -2.3
534,826 + MPMX19_04199 0.82 -2.6
534,826 + MPMX19_04199 0.82 +0.0
534,826 + MPMX19_04199 0.82 -1.5
534,827 - MPMX19_04199 0.82 -1.2
534,827 - MPMX19_04199 0.82 -0.9
534,827 - MPMX19_04199 0.82 +0.3
534,827 - MPMX19_04199 0.82 -0.3
534,827 - MPMX19_04199 0.82 -1.0
534,827 - MPMX19_04199 0.82 -0.2
534,827 - MPMX19_04199 0.82 -0.9
534,827 - MPMX19_04199 0.82 -0.9
534,827 - MPMX19_04199 0.82 -3.2
534,827 - MPMX19_04199 0.82 +0.2
534,827 - MPMX19_04199 0.82 -3.0
534,827 - MPMX19_04199 0.82 +0.1
534,827 - MPMX19_04199 0.82 -1.1
535,015 + -2.1
535,016 - +0.7
535,016 - +0.3
535,016 - -2.4
535,016 - -1.1
535,016 - -2.9
535,266 + MPMX19_04200 0.33 -0.1
535,267 - MPMX19_04200 0.34 -1.1
535,267 - MPMX19_04200 0.34 -1.1
535,267 - MPMX19_04200 0.34 -2.8
535,267 - MPMX19_04200 0.34 +0.7
535,267 - MPMX19_04200 0.34 -0.4
535,267 - MPMX19_04200 0.34 -0.7
535,267 - MPMX19_04200 0.34 -1.1
535,400 + MPMX19_04200 0.51 -0.6
535,400 + MPMX19_04200 0.51 -0.8
535,400 + MPMX19_04200 0.51 -1.4
535,400 + MPMX19_04200 0.51 -0.8
535,400 + MPMX19_04200 0.51 -1.6
535,400 + MPMX19_04200 0.51 +0.1
535,400 + MPMX19_04200 0.51 -1.4
535,400 + MPMX19_04200 0.51 -1.4
535,400 + MPMX19_04200 0.51 -1.2
535,400 + MPMX19_04200 0.51 -0.8
535,400 + MPMX19_04200 0.51 +0.1
535,400 + MPMX19_04200 0.51 -2.2
535,400 + MPMX19_04200 0.51 -2.5
535,400 + MPMX19_04200 0.51 -2.4
535,401 - MPMX19_04200 0.51 -0.9
535,401 - MPMX19_04200 0.51 -0.5
535,401 - MPMX19_04200 0.51 -2.4
535,401 - MPMX19_04200 0.51 -0.8
535,401 - MPMX19_04200 0.51 +0.5
535,401 - MPMX19_04200 0.51 -2.0
535,425 - MPMX19_04200 0.54 +0.4
535,523 + MPMX19_04200 0.67 -0.9
535,523 + MPMX19_04200 0.67 -1.0
535,523 + MPMX19_04200 0.67 -2.4
535,523 + MPMX19_04200 0.67 -2.3
535,523 + MPMX19_04200 0.67 -2.2
535,524 - MPMX19_04200 0.67 -1.1
535,530 - MPMX19_04200 0.68 -0.7
535,634 + MPMX19_04200 0.82 -1.1
535,634 + MPMX19_04200 0.82 -0.4
535,634 + MPMX19_04200 0.82 -0.4
535,634 + MPMX19_04200 0.82 -1.2
535,634 + MPMX19_04200 0.82 -1.8
535,634 + MPMX19_04200 0.82 -0.5
535,635 - MPMX19_04200 0.82 -1.5
535,635 - MPMX19_04200 0.82 -1.1
535,635 - MPMX19_04200 0.82 +0.7

Or see this region's nucleotide sequence